RNA–Protein interactions for RNA: ENST00000497026.5

CSMD3-208, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best)

Gene CSMD3, Length 1,406 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-208ENST00000497026 TMUB1Q9BVT8 246 aa9.01□□□□□ -0.97
CSMD3-208ENST00000497026 GUCA2AQ02747 115 aa9□□□□□ -0.97
CSMD3-208ENST00000497026 RNF19BQ6ZMZ0 732 aa9□□□□□ -0.97
CSMD3-208ENST00000497026 EMID1Q96A84 441 aaPredicted RBP9□□□□□ -0.97
CSMD3-208ENST00000497026 THAP11Q96EK4 314 aa8.99□□□□□ -0.97
CSMD3-208ENST00000497026 PRDM9Q9NQV7 894 aa8.99□□□□□ -0.97
CSMD3-208ENST00000497026 FMNL1O95466 1100 aaPredicted RBP8.98□□□□□ -0.97
CSMD3-208ENST00000497026 SSTR3P32745 418 aaPredicted RBP8.98□□□□□ -0.97
CSMD3-208ENST00000497026 GRIPAP1Q4V328 841 aa8.98□□□□□ -0.97
CSMD3-208ENST00000497026 FAM160A2Q8N612 972 aaPredicted RBP8.98□□□□□ -0.97
CSMD3-208ENST00000497026 PLA2G2CQ5R387 149 aa8.97□□□□□ -0.97
CSMD3-208ENST00000497026 RSF1Q96T23 1441 aaPredicted RBP8.97□□□□□ -0.97
CSMD3-208ENST00000497026 TRIM66O15016 1216 aa8.97□□□□□ -0.97
CSMD3-208ENST00000497026 DGAT1O75907 488 aa8.97□□□□□ -0.97
CSMD3-208ENST00000497026 SLC19A1P41440 591 aa8.97□□□□□ -0.97
CSMD3-208ENST00000497026 PKDCCQ504Y2 493 aa8.97□□□□□ -0.97
CSMD3-208ENST00000497026 BRICD5Q6PL45 260 aa8.97□□□□□ -0.97
CSMD3-208ENST00000497026 GIGYF2Q6Y7W6 1299 aaKnown RBP8.97□□□□□ -0.97
CSMD3-208ENST00000497026 ANKLE1Q8NAG6 615 aa8.97□□□□□ -0.97
CSMD3-208ENST00000497026 AMHR2Q16671 573 aa8.96□□□□□ -0.98
CSMD3-208ENST00000497026 LIAT1Q6ZQX7 453 aa8.96□□□□□ -0.98
CSMD3-208ENST00000497026 NUTM1Q86Y26 1132 aa8.96□□□□□ -0.98
CSMD3-208ENST00000497026 SLC24A3Q9HC58 644 aa8.96□□□□□ -0.98
CSMD3-208ENST00000497026 HOXA2O43364 376 aa8.95□□□□□ -0.98
CSMD3-208ENST00000497026 TREML4Q6UXN2 200 aa8.95□□□□□ -0.98
CSMD3-208ENST00000497026 AK7Q96M32 723 aa8.95□□□□□ -0.98
CSMD3-208ENST00000497026 PARP9Q8IXQ6 854 aa8.94□□□□□ -0.98
CSMD3-208ENST00000497026 SYMPKQ92797 1274 aaKnown RBP8.94□□□□□ -0.98
CSMD3-208ENST00000497026 USP46P62068 366 aa8.93□□□□□ -0.98
CSMD3-208ENST00000497026 BCANQ96GW7 911 aa8.93□□□□□ -0.98
CSMD3-208ENST00000497026 FCF1Q9Y324 198 aaKnown RBP8.93□□□□□ -0.98
CSMD3-208ENST00000497026 NESP48681 1621 aa8.92□□□□□ -0.98
CSMD3-208ENST00000497026 Q3C1V9 767 aa8.92□□□□□ -0.98
CSMD3-208ENST00000497026 SALL2Q9Y467 1007 aaPredicted RBP8.92□□□□□ -0.98
CSMD3-208ENST00000497026 MYT1Q01538 1121 aa8.91□□□□□ -0.98
CSMD3-208ENST00000497026 SPIRE2Q8WWL2 714 aa8.91□□□□□ -0.98
CSMD3-208ENST00000497026 MS4A1P11836 297 aa8.9□□□□□ -0.98
CSMD3-208ENST00000497026 NDUFV2P19404 249 aa8.9□□□□□ -0.98
CSMD3-208ENST00000497026 SPRYD7Q5W111 196 aa8.9□□□□□ -0.98
CSMD3-208ENST00000497026 BEGAINQ9BUH8 593 aa8.9□□□□□ -0.98
CSMD3-208ENST00000497026 TOP2AP11388 1531 aaKnown RBP8.9□□□□□ -0.98
CSMD3-208ENST00000497026 USB1Q9BQ65 265 aaKnown RBP8.89□□□□□ -0.99
CSMD3-208ENST00000497026 MOXD2PA6NHM9 499 aa8.88□□□□□ -0.99
CSMD3-208ENST00000497026 PDE4DQ08499 809 aa8.88□□□□□ -0.99
CSMD3-208ENST00000497026 ZNF697Q5TEC3 545 aa8.88□□□□□ -0.99
CSMD3-208ENST00000497026 STK17AQ9UEE5 414 aa8.88□□□□□ -0.99
CSMD3-208ENST00000497026 PCDHGC3Q9UN70 934 aa8.88□□□□□ -0.99
CSMD3-208ENST00000497026 LAMC3Q9Y6N6 1575 aa8.88□□□□□ -0.99
CSMD3-208ENST00000497026 FDX1P10109 184 aa8.88□□□□□ -0.99
CSMD3-208ENST00000497026 PRR20EP86478 221 aa8.88□□□□□ -0.99
CSMD3-208ENST00000497026 PRR20CP86479 221 aa8.88□□□□□ -0.99
CSMD3-208ENST00000497026 PRR20DP86480 221 aa8.88□□□□□ -0.99
CSMD3-208ENST00000497026 PRR20BP86481 221 aa8.88□□□□□ -0.99
CSMD3-208ENST00000497026 PRR20AP86496 221 aa8.88□□□□□ -0.99
CSMD3-208ENST00000497026 MSS51Q4VC12 460 aa8.88□□□□□ -0.99
CSMD3-208ENST00000497026 TRIM67Q6ZTA4 783 aa8.88□□□□□ -0.99
CSMD3-208ENST00000497026 ZNF598Q86UK7 904 aaKnown RBP8.88□□□□□ -0.99
CSMD3-208ENST00000497026 TNFRSF10AO00220 468 aa8.86□□□□□ -0.99
CSMD3-208ENST00000497026 FOXC1Q12948 553 aa8.86□□□□□ -0.99
CSMD3-208ENST00000497026 LCE2AQ5TA79 106 aaPredicted RBP8.86□□□□□ -0.99
CSMD3-208ENST00000497026 C6orf229H3BNL8 230 aa8.85□□□□□ -0.99
CSMD3-208ENST00000497026 CCDC24Q8N4L8 307 aa8.85□□□□□ -0.99
CSMD3-208ENST00000497026 TBC1D2Q9BYX2 928 aa8.85□□□□□ -0.99
CSMD3-208ENST00000497026 KIF21AQ7Z4S6 1674 aa8.84□□□□□ -0.99
CSMD3-208ENST00000497026 ERCC6Q03468 1493 aa8.84□□□□□ -0.99
CSMD3-208ENST00000497026 POTECB2RU33 542 aa8.83□□□□□ -1
CSMD3-208ENST00000497026 DXOO77932 396 aaKnown RBP8.83□□□□□ -1
CSMD3-208ENST00000497026 MMP16P51512 607 aa8.83□□□□□ -1
CSMD3-208ENST00000497026 THOC2Q8NI27 1593 aaKnown RBP8.83□□□□□ -1
CSMD3-208ENST00000497026 CADPSQ9ULU8 1353 aa8.82□□□□□ -1
CSMD3-208ENST00000497026 ZBTB24O43167 697 aaPredicted RBP8.81□□□□□ -1
CSMD3-208ENST00000497026 INSM1Q01101 510 aaPredicted RBP8.81□□□□□ -1
CSMD3-208ENST00000497026 GDF9O60383 454 aa8.8□□□□□ -1
CSMD3-208ENST00000497026 RPIAP49247 311 aa8.8□□□□□ -1
CSMD3-208ENST00000497026 CSPP1Q1MSJ5 1256 aa8.8□□□□□ -1
CSMD3-208ENST00000497026 RETREG3Q86VR2 466 aa8.8□□□□□ -1
CSMD3-208ENST00000497026 PCDHB15Q9Y5E8 787 aa8.8□□□□□ -1
CSMD3-208ENST00000497026 CD2BP2O95400 341 aaKnown RBP8.8□□□□□ -1
CSMD3-208ENST00000497026 JUNDP17535 347 aa8.8□□□□□ -1
CSMD3-208ENST00000497026 PKD2L1Q9P0L9 805 aa8.8□□□□□ -1
CSMD3-208ENST00000497026 FAM187AA6NFU0 413 aa8.79□□□□□ -1
CSMD3-208ENST00000497026 CUX2O14529 1486 aa8.79□□□□□ -1
CSMD3-208ENST00000497026 CFTRP13569 1480 aa8.79□□□□□ -1
CSMD3-208ENST00000497026 PDS5BQ9NTI5 1447 aa8.78□□□□□ -1
CSMD3-208ENST00000497026 CCDC88BA6NC98 1476 aa8.78□□□□□ -1
CSMD3-208ENST00000497026 WFS1O76024 890 aa8.78□□□□□ -1
CSMD3-208ENST00000497026 RSBN1LQ6PCB5 846 aaPredicted RBP8.78□□□□□ -1
CSMD3-208ENST00000497026 PRR7Q8TB68 274 aa8.78□□□□□ -1
CSMD3-208ENST00000497026 GPBP1L1Q9HC44 474 aaPredicted RBP8.78□□□□□ -1
CSMD3-208ENST00000497026 PRDM2Q13029 1718 aa8.77□□□□□ -1.01
CSMD3-208ENST00000497026 TRIM32Q13049 653 aa8.77□□□□□ -1.01
CSMD3-208ENST00000497026 RIC3Q7Z5B4 369 aa8.77□□□□□ -1.01
CSMD3-208ENST00000497026 MTMR2Q13614 643 aa8.76□□□□□ -1.01
CSMD3-208ENST00000497026 PTCRAQ6ISU1 281 aaPredicted RBP8.76□□□□□ -1.01
CSMD3-208ENST00000497026 CABLES1Q8TDN4 633 aa8.76□□□□□ -1.01
CSMD3-208ENST00000497026 SPTLC1O15269 473 aa8.75□□□□□ -1.01
CSMD3-208ENST00000497026 MYSM1Q5VVJ2 828 aa8.75□□□□□ -1.01
CSMD3-208ENST00000497026 NUDT12Q9BQG2 462 aa8.75□□□□□ -1.01
CSMD3-208ENST00000497026 LIMD1Q9UGP4 676 aa8.75□□□□□ -1.01
CSMD3-208ENST00000497026 WIPF1O43516 503 aa8.74□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms