RNA–Protein interactions for RNA: ENST00000492692.1

CSMD3-206, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 2

Gene CSMD3, Length 1,830 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-206ENST00000492692 BSDC1Q9NW68 430 aaPredicted RBP13.78□□□□□ -0.2
CSMD3-206ENST00000492692 EIF2AK3Q9NZJ5 1116 aaKnown RBP13.78□□□□□ -0.2
CSMD3-206ENST00000492692 CHMP5Q9NZZ3 219 aa13.78□□□□□ -0.2
CSMD3-206ENST00000492692 KIF16BQ96L93 1317 aa13.77□□□□□ -0.2
CSMD3-206ENST00000492692 LRPPRCP42704 1394 aaKnown RBP13.77□□□□□ -0.2
CSMD3-206ENST00000492692 MPHOSPH9Q99550 1183 aa13.77□□□□□ -0.21
CSMD3-206ENST00000492692 KIF1CO43896 1103 aaKnown RBP13.76□□□□□ -0.21
CSMD3-206ENST00000492692 NASPP49321 788 aaPredicted RBP13.76□□□□□ -0.21
CSMD3-206ENST00000492692 PDE3BQ13370 1112 aa13.76□□□□□ -0.21
CSMD3-206ENST00000492692 KIAA1107Q9UPP5 1409 aa13.76□□□□□ -0.21
CSMD3-206ENST00000492692 CT47A1Q5JQC4 288 aaPredicted RBP13.76□□□□□ -0.21
CSMD3-206ENST00000492692 PNISRQ8TF01 805 aaKnown RBP13.76□□□□□ -0.21
CSMD3-206ENST00000492692 ROCK1Q13464 1354 aa13.75□□□□□ -0.21
CSMD3-206ENST00000492692 NLRP1Q9C000 1473 aa13.75□□□□□ -0.21
CSMD3-206ENST00000492692 IRF6O14896 467 aa13.75□□□□□ -0.21
CSMD3-206ENST00000492692 GTF2A1P52655 376 aaPredicted RBP13.75□□□□□ -0.21
CSMD3-206ENST00000492692 NBPF10Q6P3W6 841 aaKnown RBP13.75□□□□□ -0.21
CSMD3-206ENST00000492692 GAS2L3Q86XJ1 694 aa13.75□□□□□ -0.21
CSMD3-206ENST00000492692 PDCL2Q8N4E4 241 aa13.75□□□□□ -0.21
CSMD3-206ENST00000492692 XPCQ01831 940 aaPredicted RBP13.74□□□□□ -0.21
CSMD3-206ENST00000492692 INSRP06213 1382 aa13.74□□□□□ -0.21
CSMD3-206ENST00000492692 CADPSQ9ULU8 1353 aa13.74□□□□□ -0.21
CSMD3-206ENST00000492692 PANK3Q9H999 370 aa13.74□□□□□ -0.21
CSMD3-206ENST00000492692 DONSONQ9NYP3 566 aa13.74□□□□□ -0.21
CSMD3-206ENST00000492692 BRD4O60885 1362 aaPredicted RBP13.73□□□□□ -0.21
CSMD3-206ENST00000492692 KDM6BO15054 1643 aa13.73□□□□□ -0.21
CSMD3-206ENST00000492692 NBPF8Q3BBV2 869 aa13.73□□□□□ -0.21
CSMD3-206ENST00000492692 ANKRD7Q92527 254 aa13.73□□□□□ -0.21
CSMD3-206ENST00000492692 SLKQ9H2G2 1235 aaPredicted RBP13.73□□□□□ -0.21
CSMD3-206ENST00000492692 GOLIM4O00461 696 aa13.72□□□□□ -0.21
CSMD3-206ENST00000492692 GUCY2CP25092 1073 aa13.72□□□□□ -0.21
CSMD3-206ENST00000492692 SEMA3FQ13275 785 aa13.72□□□□□ -0.21
CSMD3-206ENST00000492692 ICE2Q659A1 982 aa13.72□□□□□ -0.21
CSMD3-206ENST00000492692 RCAN3Q9UKA8 241 aa13.72□□□□□ -0.21
CSMD3-206ENST00000492692 MBD5Q9P267 1494 aa13.72□□□□□ -0.21
CSMD3-206ENST00000492692 ZMYM4Q5VZL5 1548 aa13.72□□□□□ -0.21
CSMD3-206ENST00000492692 DNMBPQ6XZF7 1577 aa13.72□□□□□ -0.21
CSMD3-206ENST00000492692 MAFGO15525 162 aa13.71□□□□□ -0.21
CSMD3-206ENST00000492692 OS9Q13438 667 aaPredicted RBP13.71□□□□□ -0.21
CSMD3-206ENST00000492692 SLC26A8Q96RN1 970 aa13.71□□□□□ -0.21
CSMD3-206ENST00000492692 KIF14Q15058 1648 aa13.71□□□□□ -0.21
CSMD3-206ENST00000492692 UPF2Q9HAU5 1272 aaKnown RBP13.71□□□□□ -0.22
CSMD3-206ENST00000492692 CCDC39Q9UFE4 941 aa13.71□□□□□ -0.22
CSMD3-206ENST00000492692 BCORL1Q5H9F3 1711 aa13.7□□□□□ -0.22
CSMD3-206ENST00000492692 ZMYM3Q14202 1370 aa13.7□□□□□ -0.22
CSMD3-206ENST00000492692 TRHP20396 242 aaPredicted RBP13.7□□□□□ -0.22
CSMD3-206ENST00000492692 TNNT3P45378 269 aaPredicted RBP13.7□□□□□ -0.22
CSMD3-206ENST00000492692 TERF2Q15554 542 aa13.7□□□□□ -0.22
CSMD3-206ENST00000492692 GPATCH11Q8N954 259 aa13.7□□□□□ -0.22
CSMD3-206ENST00000492692 MNS1Q8NEH6 495 aa13.7□□□□□ -0.22
CSMD3-206ENST00000492692 ZBTB9Q96C00 473 aa13.7□□□□□ -0.22
CSMD3-206ENST00000492692 ARHGAP31Q2M1Z3 1444 aa13.7□□□□□ -0.22
CSMD3-206ENST00000492692 KIF15Q9NS87 1388 aa13.69□□□□□ -0.22
CSMD3-206ENST00000492692 ZKSCAN8Q15776 578 aaPredicted RBP13.69□□□□□ -0.22
CSMD3-206ENST00000492692 CC2D2BQ6DHV5 1058 aa13.69□□□□□ -0.22
CSMD3-206ENST00000492692 SPINK5Q9NQ38 1064 aaPredicted RBP13.69□□□□□ -0.22
CSMD3-206ENST00000492692 KDM5CP41229 1560 aa13.69□□□□□ -0.22
CSMD3-206ENST00000492692 NESP48681 1621 aa13.69□□□□□ -0.22
CSMD3-206ENST00000492692 SSR1P43307 286 aaKnown RBP13.69□□□□□ -0.22
CSMD3-206ENST00000492692 DHX16O60231 1041 aaKnown RBP13.68□□□□□ -0.22
CSMD3-206ENST00000492692 ANAPC15P60006 121 aa13.68□□□□□ -0.22
CSMD3-206ENST00000492692 SYCP1Q15431 976 aa13.68□□□□□ -0.22
CSMD3-206ENST00000492692 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.68□□□□□ -0.22
CSMD3-206ENST00000492692 RRP7BPQ9NSQ0 103 aa13.68□□□□□ -0.22
CSMD3-206ENST00000492692 NBPF6Q5VWK0 638 aa13.67□□□□□ -0.22
CSMD3-206ENST00000492692 NBPF5PQ86XG9 351 aaPredicted RBP13.67□□□□□ -0.22
CSMD3-206ENST00000492692 NBPF4Q96M43 638 aa13.67□□□□□ -0.22
CSMD3-206ENST00000492692 MED4Q9NPJ6 270 aa13.67□□□□□ -0.22
CSMD3-206ENST00000492692 EP400NLQ6ZTU2 488 aa13.67□□□□□ -0.22
CSMD3-206ENST00000492692 OTUD6BQ8N6M0 293 aa13.67□□□□□ -0.22
CSMD3-206ENST00000492692 TERF2IPQ9NYB0 399 aa13.67□□□□□ -0.22
CSMD3-206ENST00000492692 ERCC6Q03468 1493 aa13.66□□□□□ -0.22
CSMD3-206ENST00000492692 SPDYE4A6NLX3 237 aa13.66□□□□□ -0.22
CSMD3-206ENST00000492692 RNF217Q8TC41 542 aa13.66□□□□□ -0.22
CSMD3-206ENST00000492692 BCL2L12Q9HB09 334 aa13.66□□□□□ -0.22
CSMD3-206ENST00000492692 MORC2Q9Y6X9 1032 aaPredicted RBP13.66□□□□□ -0.22
CSMD3-206ENST00000492692 E9PCH4 1651 aa13.66□□□□□ -0.22
CSMD3-206ENST00000492692 MLECQ14165 292 aa13.65□□□□□ -0.22
CSMD3-206ENST00000492692 RASSF4Q9H2L5 321 aa13.65□□□□□ -0.22
CSMD3-206ENST00000492692 MAGI3Q5TCQ9 1506 aa13.65□□□□□ -0.22
CSMD3-206ENST00000492692 DNMT1P26358 1616 aaKnown RBP13.65□□□□□ -0.22
CSMD3-206ENST00000492692 MYBBP1AQ9BQG0 1328 aaKnown RBP13.65□□□□□ -0.22
CSMD3-206ENST00000492692 UHRF1BP1Q6BDS2 1440 aa13.65□□□□□ -0.22
CSMD3-206ENST00000492692 NCOA3Q9Y6Q9 1424 aa13.65□□□□□ -0.22
CSMD3-206ENST00000492692 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP13.64□□□□□ -0.23
CSMD3-206ENST00000492692 KIAA2012Q0VF49 1180 aa13.64□□□□□ -0.23
CSMD3-206ENST00000492692 TBC1D2Q9BYX2 928 aa13.64□□□□□ -0.23
CSMD3-206ENST00000492692 PRDM16Q9HAZ2 1276 aa13.64□□□□□ -0.23
CSMD3-206ENST00000492692 USP47Q96K76 1375 aa13.64□□□□□ -0.23
CSMD3-206ENST00000492692 CALRP27797 417 aaKnown RBP13.64□□□□□ -0.23
CSMD3-206ENST00000492692 ZNF445P59923 1031 aa13.64□□□□□ -0.23
CSMD3-206ENST00000492692 ABCF1Q8NE71 845 aaKnown RBP eCLIP13.64□□□□□ -0.23
CSMD3-206ENST00000492692 RSPH14Q9UHP6 348 aa13.64□□□□□ -0.23
CSMD3-206ENST00000492692 NPC1L1Q9UHC9 1359 aa13.64□□□□□ -0.23
CSMD3-206ENST00000492692 CIZ1Q9ULV3 898 aaPredicted RBP13.63□□□□□ -0.23
CSMD3-206ENST00000492692 PLEKHH2Q8IVE3 1493 aa13.63□□□□□ -0.23
CSMD3-206ENST00000492692 KIF3CO14782 793 aa13.62□□□□□ -0.23
CSMD3-206ENST00000492692 U2AF2P26368 475 aaKnown RBP eCLIP13.62□□□□□ -0.23
CSMD3-206ENST00000492692 GBP4Q96PP9 640 aa13.62□□□□□ -0.23
CSMD3-206ENST00000492692 DDX41Q9UJV9 622 aaKnown RBP13.62□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms