RNA–Protein interactions for RNA: ENST00000492692.1

CSMD3-206, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 2

Gene CSMD3, Length 1,830 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-206ENST00000492692 PELP1Q8IZL8 1130 aaKnown RBP20.34■□□□□ 0.85
CSMD3-206ENST00000492692 MYT1Q01538 1121 aa20.09■□□□□ 0.81
CSMD3-206ENST00000492692 NISCHQ9Y2I1 1504 aa19.74■□□□□ 0.75
CSMD3-206ENST00000492692 TTBK1Q5TCY1 1321 aaPredicted RBP19.39■□□□□ 0.69
CSMD3-206ENST00000492692 HRCP23327 699 aa18.77■□□□□ 0.6
CSMD3-206ENST00000492692 PRKCSHP14314 528 aaPredicted RBP18.39■□□□□ 0.53
CSMD3-206ENST00000492692 ERICH6Q7L0X2 663 aa18.28■□□□□ 0.52
CSMD3-206ENST00000492692 SCAF1Q9H7N4 1312 aaKnown RBP18.27■□□□□ 0.51
CSMD3-206ENST00000492692 APLP2Q06481 763 aa18.21■□□□□ 0.51
CSMD3-206ENST00000492692 BCL11AQ9H165 835 aa18.06■□□□□ 0.48
CSMD3-206ENST00000492692 SLC24A1O60721 1099 aa17.87■□□□□ 0.45
CSMD3-206ENST00000492692 PPARGC1BQ86YN6 1023 aaKnown RBP17.84■□□□□ 0.45
CSMD3-206ENST00000492692 FAM9AQ8IZU1 332 aaPredicted RBP17.78■□□□□ 0.44
CSMD3-206ENST00000492692 CENPBP07199 599 aaPredicted RBP17.73■□□□□ 0.43
CSMD3-206ENST00000492692 ACIN1Q9UKV3 1341 aaKnown RBP17.59■□□□□ 0.41
CSMD3-206ENST00000492692 ZEB1P37275 1124 aaPredicted RBP17.44■□□□□ 0.38
CSMD3-206ENST00000492692 PCGF6Q9BYE7 350 aa17.4■□□□□ 0.38
CSMD3-206ENST00000492692 DAXXQ9UER7 740 aaPredicted RBP17.35■□□□□ 0.37
CSMD3-206ENST00000492692 ANP32EQ9BTT0 268 aa17.33■□□□□ 0.37
CSMD3-206ENST00000492692 GTF3C3Q9Y5Q9 886 aa17.31■□□□□ 0.36
CSMD3-206ENST00000492692 NEUROD1Q13562 356 aa17.28■□□□□ 0.36
CSMD3-206ENST00000492692 CCDC180Q9P1Z9 1646 aa17.2■□□□□ 0.34
CSMD3-206ENST00000492692 DCAF1Q9Y4B6 1507 aa17.17■□□□□ 0.34
CSMD3-206ENST00000492692 MYO15BQ96JP2 1530 aa17.16■□□□□ 0.34
CSMD3-206ENST00000492692 EIF5BO60841 1220 aaKnown RBP16.98■□□□□ 0.31
CSMD3-206ENST00000492692 CSRNP3Q8WYN3 585 aa16.98■□□□□ 0.31
CSMD3-206ENST00000492692 SHROOM4Q9ULL8 1493 aa16.93■□□□□ 0.3
CSMD3-206ENST00000492692 SUPT5HO00267 1087 aaKnown RBP16.92■□□□□ 0.3
CSMD3-206ENST00000492692 CHIC1Q5VXU3 224 aa16.91■□□□□ 0.3
CSMD3-206ENST00000492692 UBE2Q2Q8WVN8 375 aa16.91■□□□□ 0.3
CSMD3-206ENST00000492692 TRIM26Q12899 539 aaPredicted RBP16.88■□□□□ 0.29
CSMD3-206ENST00000492692 ZCCHC6Q5VYS8 1495 aaKnown RBP16.84■□□□□ 0.29
CSMD3-206ENST00000492692 CLSPNQ9HAW4 1339 aa16.77■□□□□ 0.28
CSMD3-206ENST00000492692 ANO8Q9HCE9 1232 aaPredicted RBP16.62■□□□□ 0.25
CSMD3-206ENST00000492692 MYT1LQ9UL68 1186 aa16.61■□□□□ 0.25
CSMD3-206ENST00000492692 ERICH6BQ5W0A0 696 aa16.6■□□□□ 0.25
CSMD3-206ENST00000492692 TSHZ2Q9NRE2 1034 aa16.58■□□□□ 0.24
CSMD3-206ENST00000492692 DIEXFQ68CQ4 756 aaKnown RBP16.49■□□□□ 0.23
CSMD3-206ENST00000492692 PKNOX2Q96KN3 472 aa16.4■□□□□ 0.22
CSMD3-206ENST00000492692 PLEKHG5O94827 1062 aa16.36■□□□□ 0.21
CSMD3-206ENST00000492692 PODXL2Q9NZ53 605 aa16.35■□□□□ 0.21
CSMD3-206ENST00000492692 SUPT16HQ9Y5B9 1047 aaKnown RBP16.3■□□□□ 0.2
CSMD3-206ENST00000492692 SALL2Q9Y467 1007 aaPredicted RBP16.29■□□□□ 0.2
CSMD3-206ENST00000492692 LOC105371045A0A1W2PR82 267 aa16.28■□□□□ 0.2
CSMD3-206ENST00000492692 TRIM41Q8WV44 630 aa16.26■□□□□ 0.19
CSMD3-206ENST00000492692 DEKP35659 375 aaKnown RBP16.12■□□□□ 0.17
CSMD3-206ENST00000492692 NEFLP07196 543 aa16.05■□□□□ 0.16
CSMD3-206ENST00000492692 CCDC136Q96JN2 1154 aa16.05■□□□□ 0.16
CSMD3-206ENST00000492692 RBM19Q9Y4C8 960 aaKnown RBP16.04■□□□□ 0.16
CSMD3-206ENST00000492692 FANCIQ9NVI1 1328 aa16.04■□□□□ 0.16
CSMD3-206ENST00000492692 ABCC9O60706 1549 aa16.02■□□□□ 0.15
CSMD3-206ENST00000492692 YTHDC1Q96MU7 727 aaKnown RBP16.01■□□□□ 0.15
CSMD3-206ENST00000492692 ZNF316A6NFI3 1004 aaPredicted RBP16■□□□□ 0.15
CSMD3-206ENST00000492692 MSH5O43196 834 aa15.98■□□□□ 0.15
CSMD3-206ENST00000492692 NCBP3Q53F19 620 aaKnown RBP15.88■□□□□ 0.13
CSMD3-206ENST00000492692 MIER1Q8N108 512 aa15.87■□□□□ 0.13
CSMD3-206ENST00000492692 GLIPR1L2Q4G1C9 344 aa15.87■□□□□ 0.13
CSMD3-206ENST00000492692 DCAF8L2P0C7V8 631 aa15.84■□□□□ 0.13
CSMD3-206ENST00000492692 RB1CC1Q8TDY2 1594 aa15.82■□□□□ 0.12
CSMD3-206ENST00000492692 ZBTB4Q9P1Z0 1013 aaPredicted RBP15.82■□□□□ 0.12
CSMD3-206ENST00000492692 CCER1Q8TC90 406 aaPredicted RBP15.81■□□□□ 0.12
CSMD3-206ENST00000492692 RSF1Q96T23 1441 aaPredicted RBP15.8■□□□□ 0.12
CSMD3-206ENST00000492692 RANGAP1P46060 587 aaPredicted RBP15.78■□□□□ 0.12
CSMD3-206ENST00000492692 ARXQ96QS3 562 aa15.78■□□□□ 0.12
CSMD3-206ENST00000492692 PDE4CQ08493 712 aa15.77■□□□□ 0.11
CSMD3-206ENST00000492692 PDIA4P13667 645 aaKnown RBP15.76■□□□□ 0.11
CSMD3-206ENST00000492692 FGD1P98174 961 aa15.71■□□□□ 0.11
CSMD3-206ENST00000492692 ZMYND15Q9H091 742 aa15.68■□□□□ 0.1
CSMD3-206ENST00000492692 C11orf95C9JLR9 678 aaPredicted RBP15.68■□□□□ 0.1
CSMD3-206ENST00000492692 IL27Q8NEV9 243 aa15.67■□□□□ 0.1
CSMD3-206ENST00000492692 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.66■□□□□ 0.1
CSMD3-206ENST00000492692 RSPH6AQ9H0K4 717 aa15.65■□□□□ 0.1
CSMD3-206ENST00000492692 WRNQ14191 1432 aaPredicted RBP eCLIP15.63■□□□□ 0.09
CSMD3-206ENST00000492692 AAMPQ13685 434 aa15.61■□□□□ 0.09
CSMD3-206ENST00000492692 KLHL34Q8N239 644 aa15.53■□□□□ 0.08
CSMD3-206ENST00000492692 TAF7LQ5H9L4 462 aa15.52■□□□□ 0.08
CSMD3-206ENST00000492692 VSIG10Q8N0Z9 540 aa15.5■□□□□ 0.07
CSMD3-206ENST00000492692 RBM10P98175 930 aaKnown RBP15.5■□□□□ 0.07
CSMD3-206ENST00000492692 RTN4Q9NQC3 1192 aaKnown RBP15.48■□□□□ 0.07
CSMD3-206ENST00000492692 POTEDQ86YR6 584 aa15.47■□□□□ 0.07
CSMD3-206ENST00000492692 WASHC2CQ9Y4E1 1318 aa15.47■□□□□ 0.07
CSMD3-206ENST00000492692 FKBP8Q14318 412 aa15.47■□□□□ 0.07
CSMD3-206ENST00000492692 RTL5Q5HYW3 569 aaPredicted RBP15.46■□□□□ 0.07
CSMD3-206ENST00000492692 NOP58Q9Y2X3 529 aaKnown RBP15.46■□□□□ 0.07
CSMD3-206ENST00000492692 SCRIBQ14160 1630 aa15.45■□□□□ 0.06
CSMD3-206ENST00000492692 WASHC2AQ641Q2 1341 aa15.45■□□□□ 0.06
CSMD3-206ENST00000492692 BCL11BQ9C0K0 894 aaPredicted RBP15.44■□□□□ 0.06
CSMD3-206ENST00000492692 EIF4G1Q04637 1599 aaKnown RBP15.43■□□□□ 0.06
CSMD3-206ENST00000492692 CDK11AQ9UQ88 783 aaPredicted RBP15.41■□□□□ 0.06
CSMD3-206ENST00000492692 BCANQ96GW7 911 aa15.4■□□□□ 0.06
CSMD3-206ENST00000492692 A0A0U1RQG5 324 aaPredicted RBP15.38■□□□□ 0.05
CSMD3-206ENST00000492692 AEBP2Q6ZN18 517 aaPredicted RBP15.37■□□□□ 0.05
CSMD3-206ENST00000492692 TNIKQ9UKE5 1360 aa15.35■□□□□ 0.05
CSMD3-206ENST00000492692 USP35Q9P2H5 1018 aa15.35■□□□□ 0.05
CSMD3-206ENST00000492692 BAZ1AQ9NRL2 1556 aaPredicted RBP15.33■□□□□ 0.05
CSMD3-206ENST00000492692 EEA1Q15075 1411 aa15.33■□□□□ 0.04
CSMD3-206ENST00000492692 RRP9O43818 475 aaKnown RBP15.32■□□□□ 0.04
CSMD3-206ENST00000492692 NBR1Q14596 966 aa15.32■□□□□ 0.04
CSMD3-206ENST00000492692 CEP162Q5TB80 1403 aa15.32■□□□□ 0.04
CSMD3-206ENST00000492692 FAM43AQ8N2R8 423 aa15.3■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms