RNA–Protein interactions for RNA: ENST00000467124.1

VPS13A-209, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 5

Gene VPS13A, Length 324 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-209ENST00000467124 NUTM2AQ8IVF1 878 aaPredicted RBP7.66□□□□□ -1.18
VPS13A-209ENST00000467124 STAC3Q96MF2 364 aa7.66□□□□□ -1.18
VPS13A-209ENST00000467124 GDPD2Q9HCC8 539 aa7.66□□□□□ -1.18
VPS13A-209ENST00000467124 CDKN2AIPQ9NXV6 580 aaPredicted RBP7.66□□□□□ -1.18
VPS13A-209ENST00000467124 RNF40O75150 1001 aa7.65□□□□□ -1.18
VPS13A-209ENST00000467124 ATP6V1AP38606 617 aa7.65□□□□□ -1.18
VPS13A-209ENST00000467124 MTMR14Q8NCE2 650 aa7.65□□□□□ -1.18
VPS13A-209ENST00000467124 ACTN4O43707 911 aaKnown RBP7.64□□□□□ -1.19
VPS13A-209ENST00000467124 FUT2Q10981 343 aa7.64□□□□□ -1.19
VPS13A-209ENST00000467124 MTMR2Q13614 643 aa7.64□□□□□ -1.19
VPS13A-209ENST00000467124 FNBP4Q8N3X1 1017 aaPredicted RBP7.64□□□□□ -1.19
VPS13A-209ENST00000467124 PRM3Q9NNZ6 103 aa7.64□□□□□ -1.19
VPS13A-209ENST00000467124 SOWAHBA6NEL2 793 aa7.63□□□□□ -1.19
VPS13A-209ENST00000467124 GOLGA8CPA6NN73 597 aa7.63□□□□□ -1.19
VPS13A-209ENST00000467124 ABL2P42684 1182 aa7.63□□□□□ -1.19
VPS13A-209ENST00000467124 TRIM26Q12899 539 aaPredicted RBP7.63□□□□□ -1.19
VPS13A-209ENST00000467124 HELBQ8NG08 1087 aaPredicted RBP7.63□□□□□ -1.19
VPS13A-209ENST00000467124 PODXL2Q9NZ53 605 aa7.63□□□□□ -1.19
VPS13A-209ENST00000467124 ZNF330Q9Y3S2 320 aaPredicted RBP7.63□□□□□ -1.19
VPS13A-209ENST00000467124 HRCP23327 699 aa7.62□□□□□ -1.19
VPS13A-209ENST00000467124 Q3C1V9 767 aa7.62□□□□□ -1.19
VPS13A-209ENST00000467124 TSC1Q92574 1164 aa7.62□□□□□ -1.19
VPS13A-209ENST00000467124 PCDHGC3Q9UN70 934 aa7.61□□□□□ -1.19
VPS13A-209ENST00000467124 TBC1D2BQ9UPU7 963 aa7.61□□□□□ -1.19
VPS13A-209ENST00000467124 USP17L8P0C7I0 530 aa7.6□□□□□ -1.19
VPS13A-209ENST00000467124 ANKRD13DQ6ZTN6 518 aa7.6□□□□□ -1.19
VPS13A-209ENST00000467124 WWC1Q8IX03 1113 aa7.6□□□□□ -1.19
VPS13A-209ENST00000467124 CCDC97Q96F63 343 aaPredicted RBP7.6□□□□□ -1.19
VPS13A-209ENST00000467124 TSR3Q9UJK0 312 aaKnown RBP7.6□□□□□ -1.19
VPS13A-209ENST00000467124 POM121CA8CG34 1229 aa7.59□□□□□ -1.19
VPS13A-209ENST00000467124 MORN1Q5T089 497 aa7.59□□□□□ -1.19
VPS13A-209ENST00000467124 NYAP1Q6ZVC0 841 aa7.59□□□□□ -1.19
VPS13A-209ENST00000467124 SALL2Q9Y467 1007 aaPredicted RBP7.59□□□□□ -1.19
VPS13A-209ENST00000467124 PPP4CP60510 307 aa7.58□□□□□ -1.2
VPS13A-209ENST00000467124 DESI1Q6ICB0 168 aa7.58□□□□□ -1.2
VPS13A-209ENST00000467124 RETREG3Q86VR2 466 aa7.58□□□□□ -1.2
VPS13A-209ENST00000467124 WNT2BQ93097 391 aa7.58□□□□□ -1.2
VPS13A-209ENST00000467124 HPS5Q9UPZ3 1129 aa7.58□□□□□ -1.2
VPS13A-209ENST00000467124 C6orf229H3BNL8 230 aa7.57□□□□□ -1.2
VPS13A-209ENST00000467124 CTDSPL2Q05D32 466 aa7.57□□□□□ -1.2
VPS13A-209ENST00000467124 SYMPKQ92797 1274 aaKnown RBP7.57□□□□□ -1.2
VPS13A-209ENST00000467124 HMX1Q9NP08 348 aaPredicted RBP7.56□□□□□ -1.2
VPS13A-209ENST00000467124 NDUFB9Q9Y6M9 179 aa7.56□□□□□ -1.2
VPS13A-209ENST00000467124 NR1I2O75469 434 aa7.55□□□□□ -1.2
VPS13A-209ENST00000467124 LRRN4Q8WUT4 740 aa7.55□□□□□ -1.2
VPS13A-209ENST00000467124 KRTAP3-3Q9BYR6 98 aa7.55□□□□□ -1.2
VPS13A-209ENST00000467124 KRTAP3-2Q9BYR7 98 aa7.55□□□□□ -1.2
VPS13A-209ENST00000467124 CFAP99D6REC4 459 aa7.54□□□□□ -1.2
VPS13A-209ENST00000467124 BCAMP50895 628 aa7.54□□□□□ -1.2
VPS13A-209ENST00000467124 PRR7Q8TB68 274 aa7.54□□□□□ -1.2
VPS13A-209ENST00000467124 SERPINA10Q9UK55 444 aa7.54□□□□□ -1.2
VPS13A-209ENST00000467124 SLC27A5Q9Y2P5 690 aa7.54□□□□□ -1.2
VPS13A-209ENST00000467124 PCDHB3Q9Y5E6 796 aa7.54□□□□□ -1.2
VPS13A-209ENST00000467124 PDIA4P13667 645 aaKnown RBP7.53□□□□□ -1.2
VPS13A-209ENST00000467124 APLP1P51693 650 aa7.53□□□□□ -1.2
VPS13A-209ENST00000467124 THSD4Q6ZMP0 1018 aa7.53□□□□□ -1.2
VPS13A-209ENST00000467124 PNMA1Q8ND90 353 aa7.53□□□□□ -1.2
VPS13A-209ENST00000467124 GJD4Q96KN9 370 aaPredicted RBP7.53□□□□□ -1.2
VPS13A-209ENST00000467124 CALR3Q96L12 384 aaKnown RBP7.53□□□□□ -1.2
VPS13A-209ENST00000467124 FMNL1O95466 1100 aaPredicted RBP7.52□□□□□ -1.21
VPS13A-209ENST00000467124 PUS10Q3MIT2 529 aaKnown RBP7.52□□□□□ -1.21
VPS13A-209ENST00000467124 EPS8L1Q8TE68 723 aa7.52□□□□□ -1.21
VPS13A-209ENST00000467124 GLMNQ92990 594 aa7.52□□□□□ -1.21
VPS13A-209ENST00000467124 IRF5Q13568 498 aa7.51□□□□□ -1.21
VPS13A-209ENST00000467124 USB1Q9BQ65 265 aaKnown RBP7.51□□□□□ -1.21
VPS13A-209ENST00000467124 WASHC4Q2M389 1173 aa7.5□□□□□ -1.21
VPS13A-209ENST00000467124 MSS51Q4VC12 460 aa7.5□□□□□ -1.21
VPS13A-209ENST00000467124 BRICD5Q6PL45 260 aa7.5□□□□□ -1.21
VPS13A-209ENST00000467124 TRIM34Q9BYJ4 488 aa7.5□□□□□ -1.21
VPS13A-209ENST00000467124 VAC14Q08AM6 782 aa7.49□□□□□ -1.21
VPS13A-209ENST00000467124 RNF19BQ6ZMZ0 732 aa7.49□□□□□ -1.21
VPS13A-209ENST00000467124 SCUBE3Q8IX30 993 aa7.49□□□□□ -1.21
VPS13A-209ENST00000467124 THAP11Q96EK4 314 aa7.49□□□□□ -1.21
VPS13A-209ENST00000467124 WBP1LQ9NX94 342 aa7.49□□□□□ -1.21
VPS13A-209ENST00000467124 RFX1P22670 979 aa7.48□□□□□ -1.21
VPS13A-209ENST00000467124 LYPD8Q6UX82 237 aa7.48□□□□□ -1.21
VPS13A-209ENST00000467124 ADAMTS19Q8TE59 1207 aa7.48□□□□□ -1.21
VPS13A-209ENST00000467124 ZC3H4Q9UPT8 1303 aaKnown RBP7.48□□□□□ -1.21
VPS13A-209ENST00000467124 PER1O15534 1290 aaPredicted RBP7.47□□□□□ -1.21
VPS13A-209ENST00000467124 GPR37L1O60883 481 aa7.47□□□□□ -1.21
VPS13A-209ENST00000467124 JUNDP17535 347 aa7.47□□□□□ -1.21
VPS13A-209ENST00000467124 NR6A1Q15406 480 aa7.47□□□□□ -1.21
VPS13A-209ENST00000467124 PTPRNQ16849 979 aa7.47□□□□□ -1.21
VPS13A-209ENST00000467124 HDGFL1Q5TGJ6 251 aa7.47□□□□□ -1.21
VPS13A-209ENST00000467124 BLOC1S3Q6QNY0 202 aa7.47□□□□□ -1.21
VPS13A-209ENST00000467124 RETREG2Q8NC44 543 aa7.46□□□□□ -1.22
VPS13A-209ENST00000467124 KCTD12Q96CX2 325 aaKnown RBP7.46□□□□□ -1.22
VPS13A-209ENST00000467124 SOX11P35716 441 aa7.45□□□□□ -1.22
VPS13A-209ENST00000467124 DXOO77932 396 aaKnown RBP7.44□□□□□ -1.22
VPS13A-209ENST00000467124 CDAN1Q8IWY9 1227 aa7.44□□□□□ -1.22
VPS13A-209ENST00000467124 SPSB2Q99619 263 aa7.44□□□□□ -1.22
VPS13A-209ENST00000467124 ADH1BP00325 375 aa7.43□□□□□ -1.22
VPS13A-209ENST00000467124 F12P00748 615 aaPredicted RBP7.43□□□□□ -1.22
VPS13A-209ENST00000467124 MMP16P51512 607 aa7.43□□□□□ -1.22
VPS13A-209ENST00000467124 AEBP1Q8IUX7 1158 aa7.43□□□□□ -1.22
VPS13A-209ENST00000467124 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP7.42□□□□□ -1.22
VPS13A-209ENST00000467124 ZPR1O75312 459 aa7.42□□□□□ -1.22
VPS13A-209ENST00000467124 CCNYL3P0C7X3 344 aa7.42□□□□□ -1.22
VPS13A-209ENST00000467124 ZNF592Q92610 1267 aa7.42□□□□□ -1.22
VPS13A-209ENST00000467124 GPKOWQ92917 476 aaPredicted RBP eCLIP7.42□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms