RNA–Protein interactions for RNA: ENST00000467124.1

VPS13A-209, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 5

Gene VPS13A, Length 324 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-209ENST00000467124 CHIC1Q5VXU3 224 aa17.45■□□□□ 0.38
VPS13A-209ENST00000467124 AEBP2Q6ZN18 517 aaPredicted RBP17.43■□□□□ 0.38
VPS13A-209ENST00000467124 PHF23Q9BUL5 403 aaPredicted RBP15.29■□□□□ 0.04
VPS13A-209ENST00000467124 SENP3Q9H4L4 574 aaPredicted RBP14.9□□□□□ -0.02
VPS13A-209ENST00000467124 PLPPR3Q6T4P5 718 aa14.36□□□□□ -0.11
VPS13A-209ENST00000467124 FOXD1Q16676 465 aa13.67□□□□□ -0.22
VPS13A-209ENST00000467124 POTEDQ86YR6 584 aa13.44□□□□□ -0.26
VPS13A-209ENST00000467124 ADRA2BP18089 450 aa13.35□□□□□ -0.27
VPS13A-209ENST00000467124 PPP6R1Q9UPN7 881 aa13.34□□□□□ -0.27
VPS13A-209ENST00000467124 PIAS4Q8N2W9 510 aaPredicted RBP13.01□□□□□ -0.33
VPS13A-209ENST00000467124 KCNA4P22459 653 aa12.66□□□□□ -0.38
VPS13A-209ENST00000467124 PPP4R3CPQ6ZMV5 832 aa12.62□□□□□ -0.39
VPS13A-209ENST00000467124 MSH5O43196 834 aa12.61□□□□□ -0.39
VPS13A-209ENST00000467124 NCBP3Q53F19 620 aaKnown RBP12.49□□□□□ -0.41
VPS13A-209ENST00000467124 SCAF1Q9H7N4 1312 aaKnown RBP12.4□□□□□ -0.42
VPS13A-209ENST00000467124 EHMT2Q96KQ7 1210 aa12.33□□□□□ -0.44
VPS13A-209ENST00000467124 CNKSR2Q8WXI2 1034 aa12.26□□□□□ -0.45
VPS13A-209ENST00000467124 NPM3O75607 178 aaKnown RBP12.21□□□□□ -0.45
VPS13A-209ENST00000467124 SLC4A1APQ9BWU0 796 aaKnown RBP12.17□□□□□ -0.46
VPS13A-209ENST00000467124 DNAJC5BQ9UF47 199 aa12□□□□□ -0.49
VPS13A-209ENST00000467124 MAPK8IP2Q13387 824 aaPredicted RBP11.97□□□□□ -0.49
VPS13A-209ENST00000467124 RNF216Q9NWF9 866 aaPredicted RBP11.95□□□□□ -0.5
VPS13A-209ENST00000467124 DMRT2Q9Y5R5 561 aa11.91□□□□□ -0.5
VPS13A-209ENST00000467124 CSRNP3Q8WYN3 585 aa11.85□□□□□ -0.51
VPS13A-209ENST00000467124 HOXD11P31277 338 aaPredicted RBP11.81□□□□□ -0.52
VPS13A-209ENST00000467124 FOXD4L1Q9NU39 408 aa11.66□□□□□ -0.54
VPS13A-209ENST00000467124 ZBTB22O15209 634 aa11.64□□□□□ -0.55
VPS13A-209ENST00000467124 SLC4A2P04920 1241 aa11.42□□□□□ -0.58
VPS13A-209ENST00000467124 MYCNP04198 464 aaPredicted RBP11.36□□□□□ -0.59
VPS13A-209ENST00000467124 ATXN8OSP0DMR3 200 aa11.29□□□□□ -0.6
VPS13A-209ENST00000467124 DCAF8L1A6NGE4 600 aa11.27□□□□□ -0.61
VPS13A-209ENST00000467124 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.2□□□□□ -0.621e-6■□□□□ 8.7
VPS13A-209ENST00000467124 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.17□□□□□ -0.62
VPS13A-209ENST00000467124 HNRNPUL2Q1KMD3 747 aaKnown RBP11.17□□□□□ -0.62
VPS13A-209ENST00000467124 SAMD1Q6SPF0 538 aaPredicted RBP11.11□□□□□ -0.63
VPS13A-209ENST00000467124 U3KPZ7 1027 aaPredicted RBP11.05□□□□□ -0.64
VPS13A-209ENST00000467124 APLP2Q06481 763 aa11.01□□□□□ -0.65
VPS13A-209ENST00000467124 ATF5Q9Y2D1 282 aaPredicted RBP10.86□□□□□ -0.67
VPS13A-209ENST00000467124 RNF39Q9H2S5 420 aa10.78□□□□□ -0.68
VPS13A-209ENST00000467124 ZNF219Q9P2Y4 722 aaPredicted RBP10.76□□□□□ -0.69
VPS13A-209ENST00000467124 C1QBPQ07021 282 aaKnown RBP10.72□□□□□ -0.69
VPS13A-209ENST00000467124 FKBP8Q14318 412 aa10.72□□□□□ -0.69
VPS13A-209ENST00000467124 CACNB1Q02641 598 aaPredicted RBP10.66□□□□□ -0.7
VPS13A-209ENST00000467124 RTN4Q9NQC3 1192 aaKnown RBP10.61□□□□□ -0.71
VPS13A-209ENST00000467124 SPINK5Q9NQ38 1064 aaPredicted RBP10.58□□□□□ -0.72
VPS13A-209ENST00000467124 CAPN15O75808 1086 aa10.57□□□□□ -0.72
VPS13A-209ENST00000467124 TRHP20396 242 aaPredicted RBP10.57□□□□□ -0.72
VPS13A-209ENST00000467124 FBLN2P98095 1184 aa10.54□□□□□ -0.72
VPS13A-209ENST00000467124 ZBTB12Q9Y330 459 aaPredicted RBP10.53□□□□□ -0.72
VPS13A-209ENST00000467124 POLA2Q14181 598 aa10.49□□□□□ -0.73
VPS13A-209ENST00000467124 AMER1Q5JTC6 1135 aaPredicted RBP10.47□□□□□ -0.73
VPS13A-209ENST00000467124 MKRN4PQ13434 485 aaPredicted RBP10.46□□□□□ -0.73
VPS13A-209ENST00000467124 SPDYE4A6NLX3 237 aa10.43□□□□□ -0.74
VPS13A-209ENST00000467124 PROM2Q8N271 834 aa10.38□□□□□ -0.75
VPS13A-209ENST00000467124 FBXO3Q9UK99 471 aa10.38□□□□□ -0.75
VPS13A-209ENST00000467124 ABCB7O75027 752 aa10.34□□□□□ -0.75
VPS13A-209ENST00000467124 DSG3P32926 999 aa10.33□□□□□ -0.76
VPS13A-209ENST00000467124 SLC24A1O60721 1099 aa10.29□□□□□ -0.76
VPS13A-209ENST00000467124 POTEHQ6S545 545 aa10.28□□□□□ -0.76
VPS13A-209ENST00000467124 SPDYE2BA6NHP3 402 aa10.21□□□□□ -0.77
VPS13A-209ENST00000467124 SPDYE6P0CI01 402 aa10.21□□□□□ -0.77
VPS13A-209ENST00000467124 SPDYE2Q495Y8 402 aa10.21□□□□□ -0.77
VPS13A-209ENST00000467124 VASPP50552 380 aaPredicted RBP10.15□□□□□ -0.78
VPS13A-209ENST00000467124 SSUH2Q9Y2M2 353 aa10.14□□□□□ -0.79
VPS13A-209ENST00000467124 OSCARQ8IYS5 282 aa10.13□□□□□ -0.79
VPS13A-209ENST00000467124 ZNF692Q9BU19 519 aaPredicted RBP10.13□□□□□ -0.79
VPS13A-209ENST00000467124 STAG3Q9UJ98 1225 aa10.06□□□□□ -0.8
VPS13A-209ENST00000467124 PABPN1Q86U42 306 aaKnown RBP eCLIP10□□□□□ -0.81
VPS13A-209ENST00000467124 IFNLR1Q8IU57 520 aaPredicted RBP9.98□□□□□ -0.81
VPS13A-209ENST00000467124 RBM42Q9BTD8 480 aaKnown RBP9.96□□□□□ -0.82
VPS13A-209ENST00000467124 DCAF8L2P0C7V8 631 aa9.89□□□□□ -0.83
VPS13A-209ENST00000467124 ZBTB47Q9UFB7 747 aaPredicted RBP9.88□□□□□ -0.83
VPS13A-209ENST00000467124 PLEKHG5O94827 1062 aa9.87□□□□□ -0.83
VPS13A-209ENST00000467124 PLCD3Q8N3E9 789 aa9.87□□□□□ -0.83
VPS13A-209ENST00000467124 SPOCK2Q92563 424 aa9.87□□□□□ -0.83
VPS13A-209ENST00000467124 AKT1S1Q96B36 256 aa9.86□□□□□ -0.83
VPS13A-209ENST00000467124 KLHL34Q8N239 644 aa9.85□□□□□ -0.83
VPS13A-209ENST00000467124 MIER1Q8N108 512 aa9.82□□□□□ -0.84
VPS13A-209ENST00000467124 SPDYE1Q8NFV5 336 aaPredicted RBP9.82□□□□□ -0.84
VPS13A-209ENST00000467124 PKD2Q13563 968 aa9.78□□□□□ -0.84
VPS13A-209ENST00000467124 PLCB2Q00722 1185 aa9.71□□□□□ -0.86
VPS13A-209ENST00000467124 TRIM41Q8WV44 630 aa9.7□□□□□ -0.86
VPS13A-209ENST00000467124 HAP1P54257 671 aaPredicted RBP9.69□□□□□ -0.86
VPS13A-209ENST00000467124 REM2Q8IYK8 340 aaPredicted RBP9.69□□□□□ -0.86
VPS13A-209ENST00000467124 ECM2O94769 699 aaPredicted RBP9.68□□□□□ -0.86
VPS13A-209ENST00000467124 PRR29P0C7W0 189 aa9.65□□□□□ -0.86
VPS13A-209ENST00000467124 CLEC11AQ9Y240 323 aa9.64□□□□□ -0.87
VPS13A-209ENST00000467124 GSE1Q14687 1217 aa9.62□□□□□ -0.87
VPS13A-209ENST00000467124 CREBZFQ9NS37 354 aa9.59□□□□□ -0.87
VPS13A-209ENST00000467124 CIZ1Q9ULV3 898 aaPredicted RBP9.59□□□□□ -0.87
VPS13A-209ENST00000467124 PITPNM1O00562 1244 aa9.58□□□□□ -0.88
VPS13A-209ENST00000467124 RGL2O15211 777 aa9.56□□□□□ -0.88
VPS13A-209ENST00000467124 NPM1P06748 294 aaKnown RBP eCLIP9.56□□□□□ -0.88
VPS13A-209ENST00000467124 NUBP1P53384 320 aa9.56□□□□□ -0.88
VPS13A-209ENST00000467124 MNX1P50219 401 aaPredicted RBP9.54□□□□□ -0.88
VPS13A-209ENST00000467124 FAM212AQ96EL1 285 aa9.54□□□□□ -0.88
VPS13A-209ENST00000467124 BBXQ8WY36 941 aaPredicted RBP9.53□□□□□ -0.88
VPS13A-209ENST00000467124 ZBTB4Q9P1Z0 1013 aaPredicted RBP9.52□□□□□ -0.89
VPS13A-209ENST00000467124 CFAP44Q96MT7 982 aa9.51□□□□□ -0.89
VPS13A-209ENST00000467124 TAOK2Q9UL54 1235 aa9.51□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 121.5 ms