RNA–Protein interactions for RNA: ENST00000461520.5

USP54-208, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 1,212 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-208ENST00000461520 EIF4ENIF1Q9NRA8 985 aaKnown RBP12.91□□□□□ -0.34
USP54-208ENST00000461520 GRIN2BQ13224 1484 aa12.91□□□□□ -0.34
USP54-208ENST00000461520 MAGI1Q96QZ7 1491 aaPredicted RBP12.9□□□□□ -0.34
USP54-208ENST00000461520 MDM2Q00987 491 aaPredicted RBP12.89□□□□□ -0.35
USP54-208ENST00000461520 SULF1Q8IWU6 871 aa12.89□□□□□ -0.35
USP54-208ENST00000461520 CLASP1Q7Z460 1538 aa12.88□□□□□ -0.35
USP54-208ENST00000461520 CHMP7Q8WUX9 453 aaPredicted RBP12.88□□□□□ -0.35
USP54-208ENST00000461520 SYNJ1O43426 1573 aa12.87□□□□□ -0.35
USP54-208ENST00000461520 NR1I2O75469 434 aa12.87□□□□□ -0.35
USP54-208ENST00000461520 GCGRP47871 477 aa12.87□□□□□ -0.35
USP54-208ENST00000461520 SCUBE3Q8IX30 993 aa12.87□□□□□ -0.35
USP54-208ENST00000461520 ZC3H15Q8WU90 426 aaKnown RBP12.87□□□□□ -0.35
USP54-208ENST00000461520 ABCA10Q8WWZ4 1543 aa12.87□□□□□ -0.35
USP54-208ENST00000461520 GAPVD1Q14C86 1478 aa12.86□□□□□ -0.35
USP54-208ENST00000461520 FUT2Q10981 343 aa12.86□□□□□ -0.35
USP54-208ENST00000461520 KRI1Q8N9T8 703 aaKnown RBP12.86□□□□□ -0.35
USP54-208ENST00000461520 SYNJ2O15056 1496 aa12.85□□□□□ -0.35
USP54-208ENST00000461520 PRKD2Q9BZL6 878 aa12.85□□□□□ -0.35
USP54-208ENST00000461520 ZMYND10O75800 440 aa12.84□□□□□ -0.35
USP54-208ENST00000461520 GGCXP38435 758 aa12.84□□□□□ -0.35
USP54-208ENST00000461520 BARGINQ6ZT62 677 aa12.84□□□□□ -0.35
USP54-208ENST00000461520 IRX2Q9BZI1 471 aaPredicted RBP12.84□□□□□ -0.35
USP54-208ENST00000461520 PBRM1Q86U86 1689 aa12.83□□□□□ -0.36
USP54-208ENST00000461520 WRNQ14191 1432 aaPredicted RBP eCLIP12.82□□□□□ -0.36
USP54-208ENST00000461520 ATP6V1AP38606 617 aa12.82□□□□□ -0.36
USP54-208ENST00000461520 MORN1Q5T089 497 aa12.82□□□□□ -0.36
USP54-208ENST00000461520 ABCA5Q8WWZ7 1642 aa12.81□□□□□ -0.36
USP54-208ENST00000461520 RNF223E7ERA6 249 aa12.81□□□□□ -0.36
USP54-208ENST00000461520 S1PR4O95977 384 aa12.81□□□□□ -0.36
USP54-208ENST00000461520 CD46P15529 392 aa12.81□□□□□ -0.36
USP54-208ENST00000461520 TMUB1Q9BVT8 246 aa12.81□□□□□ -0.36
USP54-208ENST00000461520 PPEF1O14829 653 aaPredicted RBP12.8□□□□□ -0.36
USP54-208ENST00000461520 ADH1BP00325 375 aa12.8□□□□□ -0.36
USP54-208ENST00000461520 TOP2BQ02880 1626 aa12.8□□□□□ -0.36
USP54-208ENST00000461520 SLC27A5Q9Y2P5 690 aa12.79□□□□□ -0.36
USP54-208ENST00000461520 BIVM-ERCC5R4GMW8 1640 aa12.79□□□□□ -0.36
USP54-208ENST00000461520 CLCN1P35523 988 aa12.77□□□□□ -0.37
USP54-208ENST00000461520 SPSB2Q99619 263 aa12.77□□□□□ -0.37
USP54-208ENST00000461520 REPIN1Q9BWE0 567 aaKnown RBP12.77□□□□□ -0.37
USP54-208ENST00000461520 GPCPD1Q9NPB8 672 aa12.77□□□□□ -0.37
USP54-208ENST00000461520 SLC6A16Q9GZN6 736 aa12.75□□□□□ -0.37
USP54-208ENST00000461520 FAM217BQ9NTX9 383 aaPredicted RBP12.75□□□□□ -0.37
USP54-208ENST00000461520 V9GY48 417 aaPredicted RBP12.75□□□□□ -0.37
USP54-208ENST00000461520 THAP11Q96EK4 314 aa12.74□□□□□ -0.37
USP54-208ENST00000461520 KDM4AO75164 1064 aa12.73□□□□□ -0.37
USP54-208ENST00000461520 GRIN2AQ12879 1464 aa12.72□□□□□ -0.37
USP54-208ENST00000461520 EMID1Q96A84 441 aaPredicted RBP12.72□□□□□ -0.37
USP54-208ENST00000461520 FMNL1O95466 1100 aaPredicted RBP12.71□□□□□ -0.37
USP54-208ENST00000461520 GRIPAP1Q4V328 841 aa12.71□□□□□ -0.37
USP54-208ENST00000461520 ANKLE1Q8NAG6 615 aa12.71□□□□□ -0.37
USP54-208ENST00000461520 ADAMTS12P58397 1594 aa12.71□□□□□ -0.37
USP54-208ENST00000461520 ERICH3Q5RHP9 1530 aa12.71□□□□□ -0.38
USP54-208ENST00000461520 FHAD1B1AJZ9 1412 aa12.71□□□□□ -0.38
USP54-208ENST00000461520 HLA-CQ95604 372 aa12.7□□□□□ -0.38
USP54-208ENST00000461520 NUP160Q12769 1436 aa12.7□□□□□ -0.38
USP54-208ENST00000461520 ERCC6L2Q5T890 1561 aa12.69□□□□□ -0.38
USP54-208ENST00000461520 SLC24A1O60721 1099 aa12.69□□□□□ -0.38
USP54-208ENST00000461520 SLC19A1P41440 591 aa12.69□□□□□ -0.38
USP54-208ENST00000461520 TTLL12Q14166 644 aaPredicted RBP12.69□□□□□ -0.38
USP54-208ENST00000461520 BRICD5Q6PL45 260 aa12.69□□□□□ -0.38
USP54-208ENST00000461520 RNF19BQ6ZMZ0 732 aa12.69□□□□□ -0.38
USP54-208ENST00000461520 FAM160A2Q8N612 972 aaPredicted RBP12.69□□□□□ -0.38
USP54-208ENST00000461520 SSTR3P32745 418 aaPredicted RBP12.68□□□□□ -0.38
USP54-208ENST00000461520 GFRA3O60609 400 aa12.67□□□□□ -0.38
USP54-208ENST00000461520 PLA2G2CQ5R387 149 aa12.67□□□□□ -0.38
USP54-208ENST00000461520 SALL2Q9Y467 1007 aaPredicted RBP12.67□□□□□ -0.38
USP54-208ENST00000461520 CEP170Q5SW79 1584 aa12.66□□□□□ -0.38
USP54-208ENST00000461520 AMHR2Q16671 573 aa12.66□□□□□ -0.38
USP54-208ENST00000461520 LIAT1Q6ZQX7 453 aa12.66□□□□□ -0.38
USP54-208ENST00000461520 PRDM9Q9NQV7 894 aa12.66□□□□□ -0.38
USP54-208ENST00000461520 TRIM66O15016 1216 aa12.64□□□□□ -0.39
USP54-208ENST00000461520 HOXA2O43364 376 aa12.64□□□□□ -0.39
USP54-208ENST00000461520 USP46P62068 366 aa12.64□□□□□ -0.39
USP54-208ENST00000461520 GUCA2AQ02747 115 aa12.64□□□□□ -0.39
USP54-208ENST00000461520 GIGYF2Q6Y7W6 1299 aaKnown RBP12.63□□□□□ -0.39
USP54-208ENST00000461520 NUTM1Q86Y26 1132 aa12.63□□□□□ -0.39
USP54-208ENST00000461520 AK7Q96M32 723 aa12.63□□□□□ -0.39
USP54-208ENST00000461520 Q3C1V9 767 aa12.62□□□□□ -0.39
USP54-208ENST00000461520 SPRYD7Q5W111 196 aa12.62□□□□□ -0.39
USP54-208ENST00000461520 Q6ZNB5 142 aa12.62□□□□□ -0.39
USP54-208ENST00000461520 SHROOM2Q13796 1616 aa12.62□□□□□ -0.39
USP54-208ENST00000461520 FCF1Q9Y324 198 aaKnown RBP12.61□□□□□ -0.39
USP54-208ENST00000461520 PDZRN3Q9UPQ7 1066 aa12.6□□□□□ -0.39
USP54-208ENST00000461520 LAPTM4AQ15012 233 aa12.59□□□□□ -0.39
USP54-208ENST00000461520 MSS51Q4VC12 460 aa12.59□□□□□ -0.39
USP54-208ENST00000461520 PARP9Q8IXQ6 854 aa12.59□□□□□ -0.39
USP54-208ENST00000461520 SLC24A3Q9HC58 644 aa12.59□□□□□ -0.39
USP54-208ENST00000461520 KIF13AQ9H1H9 1805 aa12.58□□□□□ -0.4
USP54-208ENST00000461520 SYMPKQ92797 1274 aaKnown RBP12.58□□□□□ -0.4
USP54-208ENST00000461520 KIF27Q86VH2 1401 aa12.57□□□□□ -0.4
USP54-208ENST00000461520 TRIM67Q6ZTA4 783 aa12.57□□□□□ -0.4
USP54-208ENST00000461520 ZNF598Q86UK7 904 aaKnown RBP12.57□□□□□ -0.4
USP54-208ENST00000461520 SPIRE2Q8WWL2 714 aa12.57□□□□□ -0.4
USP54-208ENST00000461520 USB1Q9BQ65 265 aaKnown RBP12.57□□□□□ -0.4
USP54-208ENST00000461520 NRG2O14511 850 aaPredicted RBP12.56□□□□□ -0.4
USP54-208ENST00000461520 BCANQ96GW7 911 aa12.56□□□□□ -0.4
USP54-208ENST00000461520 BEGAINQ9BUH8 593 aa12.56□□□□□ -0.4
USP54-208ENST00000461520 IGF1RP08069 1367 aa12.56□□□□□ -0.4
USP54-208ENST00000461520 PRG4Q92954 1404 aaPredicted RBP12.55□□□□□ -0.4
USP54-208ENST00000461520 ZNF697Q5TEC3 545 aa12.55□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 8.7 ms