RNA–Protein interactions for RNA: ENST00000448238.2

NIPBL-202, Transcript of NIPBL, cohesin loading factor, humanhuman

TSL 1 (best) BASIC

Gene NIPBL, Length 8,729 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIPBL-202ENST00000448238 ANAPC15P60006 121 aa10.65□□□□□ -0.7
NIPBL-202ENST00000448238 FAM161AQ3B820 660 aa10.65□□□□□ -0.7
NIPBL-202ENST00000448238 TMCO3Q6UWJ1 677 aa10.65□□□□□ -0.7
NIPBL-202ENST00000448238 TRIM5Q9C035 493 aa10.65□□□□□ -0.7
NIPBL-202ENST00000448238 JAKMIP3Q5VZ66 844 aa10.65□□□□□ -0.7
NIPBL-202ENST00000448238 TIGD1Q96MW7 591 aa10.65□□□□□ -0.7
NIPBL-202ENST00000448238 PDCL3Q9H2J4 239 aa10.65□□□□□ -0.71
NIPBL-202ENST00000448238 GCOM1H8Y6P7 765 aaPredicted RBP10.64□□□□□ -0.71
NIPBL-202ENST00000448238 MYZAPP0CAP1 466 aa10.64□□□□□ -0.71
NIPBL-202ENST00000448238 SRPK2P78362 688 aaKnown RBP10.64□□□□□ -0.71
NIPBL-202ENST00000448238 GIGYF2Q6Y7W6 1299 aaKnown RBP10.64□□□□□ -0.71
NIPBL-202ENST00000448238 CCDC180Q9P1Z9 1646 aa10.64□□□□□ -0.71
NIPBL-202ENST00000448238 NFXL1Q6ZNB6 911 aa10.64□□□□□ -0.71
NIPBL-202ENST00000448238 RILPL2Q969X0 211 aa10.64□□□□□ -0.71
NIPBL-202ENST00000448238 SMC3Q9UQE7 1217 aa10.64□□□□□ -0.71
NIPBL-202ENST00000448238 RAD21O60216 631 aa10.64□□□□□ -0.71
NIPBL-202ENST00000448238 FERP16591 822 aa10.64□□□□□ -0.71
NIPBL-202ENST00000448238 PDCP20941 246 aa10.64□□□□□ -0.71
NIPBL-202ENST00000448238 MBD3O95983 291 aa10.63□□□□□ -0.71
NIPBL-202ENST00000448238 DACH1Q9UI36 760 aa10.63□□□□□ -0.71
NIPBL-202ENST00000448238 CDK5RAP3Q96JB5 506 aa10.63□□□□□ -0.71
NIPBL-202ENST00000448238 NAP1L3Q99457 506 aaPredicted RBP10.63□□□□□ -0.71
NIPBL-202ENST00000448238 SPECC1LQ69YQ0 1117 aa10.63□□□□□ -0.71
NIPBL-202ENST00000448238 CENPQQ7L2Z9 268 aaPredicted RBP10.63□□□□□ -0.71
NIPBL-202ENST00000448238 ZSCAN21Q9Y5A6 473 aaPredicted RBP10.63□□□□□ -0.71
NIPBL-202ENST00000448238 PPFIBP1Q86W92 1011 aa10.62□□□□□ -0.71
NIPBL-202ENST00000448238 VPS37DQ86XT2 251 aa10.62□□□□□ -0.71
NIPBL-202ENST00000448238 LRRFIP2Q9Y608 721 aaKnown RBP10.62□□□□□ -0.71
NIPBL-202ENST00000448238 KANK1Q14678 1352 aa10.62□□□□□ -0.71
NIPBL-202ENST00000448238 NOL3O60936 208 aaKnown RBP10.62□□□□□ -0.71
NIPBL-202ENST00000448238 FOXD4L6Q3SYB3 417 aaPredicted RBP10.62□□□□□ -0.71
NIPBL-202ENST00000448238 FOXD4L3Q6VB84 417 aaPredicted RBP10.62□□□□□ -0.71
NIPBL-202ENST00000448238 POTEJP0CG39 1038 aa10.62□□□□□ -0.71
NIPBL-202ENST00000448238 FAM184BQ9ULE4 1060 aa10.62□□□□□ -0.71
NIPBL-202ENST00000448238 EPB41L2O43491 1005 aaKnown RBP10.61□□□□□ -0.71
NIPBL-202ENST00000448238 CSB-PGBD3P0DP91 1061 aa10.61□□□□□ -0.71
NIPBL-202ENST00000448238 GPATCH11Q8N954 259 aa10.61□□□□□ -0.71
NIPBL-202ENST00000448238 KIF2AO00139 706 aaPredicted RBP10.61□□□□□ -0.71
NIPBL-202ENST00000448238 JMYQ8N9B5 988 aa10.61□□□□□ -0.71
NIPBL-202ENST00000448238 SMC2O95347 1197 aa10.61□□□□□ -0.71
NIPBL-202ENST00000448238 SLC4A10Q6U841 1118 aa10.61□□□□□ -0.71
NIPBL-202ENST00000448238 CPSF2Q9P2I0 782 aaKnown RBP10.61□□□□□ -0.71
NIPBL-202ENST00000448238 IMMTQ16891 758 aaKnown RBP10.6□□□□□ -0.71
NIPBL-202ENST00000448238 RALYLQ86SE5 291 aaKnown RBP10.6□□□□□ -0.71
NIPBL-202ENST00000448238 SREK1Q8WXA9 508 aaKnown RBP10.6□□□□□ -0.71
NIPBL-202ENST00000448238 CCDC102AQ96A19 550 aa10.6□□□□□ -0.71
NIPBL-202ENST00000448238 ROCK1Q13464 1354 aa10.6□□□□□ -0.71
NIPBL-202ENST00000448238 PDE3BQ13370 1112 aa10.6□□□□□ -0.71
NIPBL-202ENST00000448238 HOOK3Q86VS8 718 aa10.6□□□□□ -0.71
NIPBL-202ENST00000448238 TCHPQ9BT92 498 aa10.6□□□□□ -0.71
NIPBL-202ENST00000448238 E9PSI1 815 aa10.6□□□□□ -0.71
NIPBL-202ENST00000448238 U2AF1L5P0DN76 240 aaPredicted RBP10.6□□□□□ -0.71
NIPBL-202ENST00000448238 U2AF1Q01081 240 aaKnown RBP eCLIP10.6□□□□□ -0.71
NIPBL-202ENST00000448238 IPO4Q8TEX9 1081 aaKnown RBP10.59□□□□□ -0.71
NIPBL-202ENST00000448238 SUDS3Q9H7L9 328 aaPredicted RBP10.59□□□□□ -0.71
NIPBL-202ENST00000448238 TAOK3Q9H2K8 898 aa10.59□□□□□ -0.71
NIPBL-202ENST00000448238 VPS37CA5D8V6 355 aaPredicted RBP10.59□□□□□ -0.71
NIPBL-202ENST00000448238 CBFA2T2O43439 604 aa10.59□□□□□ -0.71
NIPBL-202ENST00000448238 ZFYP08048 801 aaPredicted RBP10.59□□□□□ -0.71
NIPBL-202ENST00000448238 SART3Q15020 963 aaKnown RBP10.59□□□□□ -0.71
NIPBL-202ENST00000448238 PPP1R9BQ96SB3 815 aa10.59□□□□□ -0.71
NIPBL-202ENST00000448238 HOMER2Q9NSB8 354 aa10.59□□□□□ -0.71
NIPBL-202ENST00000448238 DDX12PQ92771 950 aa10.58□□□□□ -0.72
NIPBL-202ENST00000448238 FAM114A2Q9NRY5 505 aa10.58□□□□□ -0.72
NIPBL-202ENST00000448238 CCDC148Q8NFR7 591 aa10.58□□□□□ -0.72
NIPBL-202ENST00000448238 SENP3-EIF4A1A0A087X0R7 540 aa10.58□□□□□ -0.72
NIPBL-202ENST00000448238 ANO2Q9NQ90 1003 aa10.58□□□□□ -0.72
NIPBL-202ENST00000448238 MKRN1Q9UHC7 482 aaKnown RBP10.58□□□□□ -0.72
NIPBL-202ENST00000448238 FEZ2Q9UHY8 353 aaPredicted RBP10.58□□□□□ -0.72
NIPBL-202ENST00000448238 RRP7BPQ9NSQ0 103 aa10.58□□□□□ -0.72
NIPBL-202ENST00000448238 CCDC158Q5M9N0 1113 aa10.57□□□□□ -0.72
NIPBL-202ENST00000448238 RAB3IL1Q8TBN0 382 aa10.57□□□□□ -0.72
NIPBL-202ENST00000448238 SENP3Q9H4L4 574 aaPredicted RBP10.57□□□□□ -0.72
NIPBL-202ENST00000448238 PSMA5P28066 241 aa10.57□□□□□ -0.72
NIPBL-202ENST00000448238 PABPN1LA6NDY0 278 aaKnown RBP10.57□□□□□ -0.72
NIPBL-202ENST00000448238 TAF4BQ92750 862 aa10.57□□□□□ -0.72
NIPBL-202ENST00000448238 CEP83Q9Y592 693 aa10.57□□□□□ -0.72
NIPBL-202ENST00000448238 SLU7O95391 586 aaKnown RBP10.57□□□□□ -0.72
NIPBL-202ENST00000448238 BCL2L13Q9BXK5 485 aa10.57□□□□□ -0.72
NIPBL-202ENST00000448238 SEPT14Q6ZU15 432 aa10.57□□□□□ -0.72
NIPBL-202ENST00000448238 SOX12O15370 315 aa10.56□□□□□ -0.72
NIPBL-202ENST00000448238 KRT18P05783 430 aaKnown RBP10.56□□□□□ -0.72
NIPBL-202ENST00000448238 ZNF397Q8NF99 534 aaPredicted RBP10.56□□□□□ -0.72
NIPBL-202ENST00000448238 MCM2P49736 904 aa10.56□□□□□ -0.72
NIPBL-202ENST00000448238 AEBP1Q8IUX7 1158 aa10.56□□□□□ -0.72
NIPBL-202ENST00000448238 WASHC2AQ641Q2 1341 aa10.56□□□□□ -0.72
NIPBL-202ENST00000448238 FAM193AP78312 1265 aa10.56□□□□□ -0.72
NIPBL-202ENST00000448238 UBXN4Q92575 508 aa10.56□□□□□ -0.72
NIPBL-202ENST00000448238 GOLGA6L9A6NEM1 432 aa10.55□□□□□ -0.72
NIPBL-202ENST00000448238 MNAT1P51948 309 aa10.55□□□□□ -0.72
NIPBL-202ENST00000448238 PABPN1Q86U42 306 aaKnown RBP eCLIP10.55□□□□□ -0.72
NIPBL-202ENST00000448238 BBXQ8WY36 941 aaPredicted RBP10.55□□□□□ -0.72
NIPBL-202ENST00000448238 ZNF396Q96N95 335 aaPredicted RBP10.55□□□□□ -0.72
NIPBL-202ENST00000448238 ANKRD45Q5TZF3 282 aa10.55□□□□□ -0.72
NIPBL-202ENST00000448238 SERPINC1P01008 464 aa10.55□□□□□ -0.72
NIPBL-202ENST00000448238 PPM1FP49593 454 aaPredicted RBP10.55□□□□□ -0.72
NIPBL-202ENST00000448238 DNAAF4Q8WXU2 420 aa10.55□□□□□ -0.72
NIPBL-202ENST00000448238 ERICH4A6NGS2 130 aa10.55□□□□□ -0.72
NIPBL-202ENST00000448238 CCDC174Q6PII3 467 aa10.55□□□□□ -0.72
NIPBL-202ENST00000448238 FBF1Q8TES7 1133 aa10.55□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms