RNA–Protein interactions for RNA: ENST00000433297.2

HMGCS1-202, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

APPRIS P1 TSL 5 BASIC

Gene HMGCS1, Length 3,466 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-202ENST00000433297 MAGI1Q96QZ7 1491 aaPredicted RBP14.43□□□□□ -0.1
HMGCS1-202ENST00000433297 U2AF1L5P0DN76 240 aaPredicted RBP14.43□□□□□ -0.1
HMGCS1-202ENST00000433297 U2AF1Q01081 240 aaKnown RBP eCLIP14.43□□□□□ -0.15e-6■□□□□ 10.8
HMGCS1-202ENST00000433297 CLASP1Q7Z460 1538 aa14.43□□□□□ -0.1
HMGCS1-202ENST00000433297 RAB3GAP1Q15042 981 aa14.43□□□□□ -0.1
HMGCS1-202ENST00000433297 CD2BP2O95400 341 aaKnown RBP14.42□□□□□ -0.1
HMGCS1-202ENST00000433297 ADCY10Q96PN6 1610 aa14.42□□□□□ -0.1
HMGCS1-202ENST00000433297 CFAP70Q5T0N1 1121 aa14.42□□□□□ -0.1
HMGCS1-202ENST00000433297 MTHFSP49914 203 aa14.41□□□□□ -0.1
HMGCS1-202ENST00000433297 XPCQ01831 940 aaPredicted RBP14.41□□□□□ -0.1
HMGCS1-202ENST00000433297 CCDC141Q6ZP82 1450 aa14.41□□□□□ -0.1
HMGCS1-202ENST00000433297 ABCC2Q92887 1545 aa14.41□□□□□ -0.1
HMGCS1-202ENST00000433297 TRIM27P14373 513 aa14.41□□□□□ -0.1
HMGCS1-202ENST00000433297 CDC42BPAQ5VT25 1732 aa14.41□□□□□ -0.1
HMGCS1-202ENST00000433297 WDR63Q8IWG1 891 aa14.41□□□□□ -0.1
HMGCS1-202ENST00000433297 EXOSC9Q06265 439 aaKnown RBP14.4□□□□□ -0.1
HMGCS1-202ENST00000433297 PDZRN4Q6ZMN7 1036 aaPredicted RBP14.4□□□□□ -0.1
HMGCS1-202ENST00000433297 SMC5Q8IY18 1101 aa14.4□□□□□ -0.1
HMGCS1-202ENST00000433297 OFD1O75665 1012 aa14.4□□□□□ -0.1
HMGCS1-202ENST00000433297 RTEL1-TNFRSF6BF6WH68 1400 aa14.4□□□□□ -0.1
HMGCS1-202ENST00000433297 RSPH4AQ5TD94 716 aa14.4□□□□□ -0.1
HMGCS1-202ENST00000433297 MCTP1Q6DN14 999 aa14.4□□□□□ -0.1
HMGCS1-202ENST00000433297 CAVIN1Q6NZI2 390 aaKnown RBP14.4□□□□□ -0.1
HMGCS1-202ENST00000433297 PODXL2Q9NZ53 605 aa14.4□□□□□ -0.1
HMGCS1-202ENST00000433297 CARMIL2Q6F5E8 1435 aa14.4□□□□□ -0.1
HMGCS1-202ENST00000433297 NOB1Q9ULX3 412 aaKnown RBP14.39□□□□□ -0.11
HMGCS1-202ENST00000433297 RIPK4P57078 832 aa14.39□□□□□ -0.11
HMGCS1-202ENST00000433297 DDX19BQ9UMR2 479 aa14.39□□□□□ -0.11
HMGCS1-202ENST00000433297 NUP160Q12769 1436 aa14.39□□□□□ -0.11
HMGCS1-202ENST00000433297 DDIT3P35638 169 aa14.39□□□□□ -0.11
HMGCS1-202ENST00000433297 ANKRD45Q5TZF3 282 aa14.39□□□□□ -0.11
HMGCS1-202ENST00000433297 SLC12A5Q9H2X9 1139 aa14.39□□□□□ -0.11
HMGCS1-202ENST00000433297 CIZ1Q9ULV3 898 aaPredicted RBP14.39□□□□□ -0.11
HMGCS1-202ENST00000433297 TMEM57Q8N5G2 664 aa14.38□□□□□ -0.11
HMGCS1-202ENST00000433297 SNX21Q969T3 373 aa14.38□□□□□ -0.11
HMGCS1-202ENST00000433297 ATP10BO94823 1461 aa14.38□□□□□ -0.11
HMGCS1-202ENST00000433297 U2SURPO15042 1029 aaKnown RBP14.38□□□□□ -0.11
HMGCS1-202ENST00000433297 RBM25P49756 843 aaKnown RBP14.38□□□□□ -0.11
HMGCS1-202ENST00000433297 CALD1Q05682 793 aaKnown RBP14.38□□□□□ -0.11
HMGCS1-202ENST00000433297 SSH1Q8WYL5 1049 aa14.38□□□□□ -0.11
HMGCS1-202ENST00000433297 K7ELQ4 463 aaPredicted RBP14.38□□□□□ -0.11
HMGCS1-202ENST00000433297 GAS2L2Q8NHY3 880 aa14.38□□□□□ -0.11
HMGCS1-202ENST00000433297 ABCC10Q5T3U5 1492 aa14.37□□□□□ -0.11
HMGCS1-202ENST00000433297 CFAP53Q96M91 514 aa14.37□□□□□ -0.11
HMGCS1-202ENST00000433297 EIF2AK4Q9P2K8 1649 aaKnown RBP14.37□□□□□ -0.11
HMGCS1-202ENST00000433297 SCAF11Q99590 1463 aaKnown RBP14.37□□□□□ -0.11
HMGCS1-202ENST00000433297 UQCRHLA0A096LP55 91 aa14.37□□□□□ -0.11
HMGCS1-202ENST00000433297 UQCRHP07919 91 aa14.37□□□□□ -0.11
HMGCS1-202ENST00000433297 PPP1R9BQ96SB3 815 aa14.37□□□□□ -0.11
HMGCS1-202ENST00000433297 ZMYM3Q14202 1370 aa14.37□□□□□ -0.11
HMGCS1-202ENST00000433297 HDAC1Q13547 482 aaPredicted RBP14.36□□□□□ -0.11
HMGCS1-202ENST00000433297 NPC1L1Q9UHC9 1359 aa14.36□□□□□ -0.11
HMGCS1-202ENST00000433297 GRIN2AQ12879 1464 aa14.36□□□□□ -0.11
HMGCS1-202ENST00000433297 PTMSP20962 102 aa14.36□□□□□ -0.11
HMGCS1-202ENST00000433297 ATF7IPQ6VMQ6 1270 aa14.36□□□□□ -0.11
HMGCS1-202ENST00000433297 PRDM10Q9NQV6 1147 aa14.36□□□□□ -0.11
HMGCS1-202ENST00000433297 BAG4O95429 457 aaKnown RBP14.36□□□□□ -0.11
HMGCS1-202ENST00000433297 A0A0U1RQG5 324 aaPredicted RBP14.35□□□□□ -0.11
HMGCS1-202ENST00000433297 CHD1LQ86WJ1 897 aa14.35□□□□□ -0.11
HMGCS1-202ENST00000433297 C1orf115Q9H7X2 142 aa14.35□□□□□ -0.11
HMGCS1-202ENST00000433297 POLR3AO14802 1390 aaPredicted RBP14.35□□□□□ -0.11
HMGCS1-202ENST00000433297 CHGAP10645 457 aaKnown RBP14.34□□□□□ -0.11
HMGCS1-202ENST00000433297 KLHL40Q2TBA0 621 aa14.34□□□□□ -0.11
HMGCS1-202ENST00000433297 TRAK1Q9UPV9 953 aa14.34□□□□□ -0.11
HMGCS1-202ENST00000433297 SYNJ2O15056 1496 aa14.34□□□□□ -0.11
HMGCS1-202ENST00000433297 FOXD4L5Q5VV16 416 aaPredicted RBP14.34□□□□□ -0.11
HMGCS1-202ENST00000433297 FOXD4L4Q8WXT5 416 aaPredicted RBP14.34□□□□□ -0.11
HMGCS1-202ENST00000433297 SYNMO15061 1565 aa14.33□□□□□ -0.11
HMGCS1-202ENST00000433297 KIF2CQ99661 725 aa14.33□□□□□ -0.12
HMGCS1-202ENST00000433297 LAMC1P11047 1609 aa14.33□□□□□ -0.12
HMGCS1-202ENST00000433297 RBSNQ9H1K0 784 aa14.33□□□□□ -0.12
HMGCS1-202ENST00000433297 NUCB1Q02818 461 aa14.32□□□□□ -0.12
HMGCS1-202ENST00000433297 RBM27Q9P2N5 1060 aaKnown RBP14.32□□□□□ -0.12
HMGCS1-202ENST00000433297 SENP3Q9H4L4 574 aaPredicted RBP14.32□□□□□ -0.12
HMGCS1-202ENST00000433297 NSD3Q9BZ95 1437 aa14.32□□□□□ -0.12
HMGCS1-202ENST00000433297 MYO5CQ9NQX4 1742 aa14.32□□□□□ -0.12
HMGCS1-202ENST00000433297 PRPF40AO75400 957 aaKnown RBP14.32□□□□□ -0.12
HMGCS1-202ENST00000433297 PLEKHG5O94827 1062 aa14.32□□□□□ -0.12
HMGCS1-202ENST00000433297 PRIM1P49642 420 aaKnown RBP14.32□□□□□ -0.12
HMGCS1-202ENST00000433297 ZSCAN23Q3MJ62 389 aa14.32□□□□□ -0.12
HMGCS1-202ENST00000433297 NCOA3Q9Y6Q9 1424 aa14.31□□□□□ -0.12
HMGCS1-202ENST00000433297 TBC1D9Q6ZT07 1266 aa14.31□□□□□ -0.12
HMGCS1-202ENST00000433297 MPNDQ8N594 471 aa14.31□□□□□ -0.12
HMGCS1-202ENST00000433297 RNF214Q8ND24 703 aa14.31□□□□□ -0.12
HMGCS1-202ENST00000433297 DNTTIP2Q5QJE6 756 aaKnown RBP14.31□□□□□ -0.12
HMGCS1-202ENST00000433297 ZBTB40Q9NUA8 1239 aa14.31□□□□□ -0.12
HMGCS1-202ENST00000433297 ZHX1Q9UKY1 873 aaPredicted RBP14.31□□□□□ -0.12
HMGCS1-202ENST00000433297 CHAMP1Q96JM3 812 aa14.3□□□□□ -0.12
HMGCS1-202ENST00000433297 PRDM4Q9UKN5 801 aa14.3□□□□□ -0.12
HMGCS1-202ENST00000433297 PKP1Q13835 747 aa14.3□□□□□ -0.12
HMGCS1-202ENST00000433297 PHF23Q9BUL5 403 aaPredicted RBP14.3□□□□□ -0.12
HMGCS1-202ENST00000433297 SYCP2Q9BX26 1530 aa14.3□□□□□ -0.12
HMGCS1-202ENST00000433297 PTMAP06454 111 aaKnown RBP14.29□□□□□ -0.12
HMGCS1-202ENST00000433297 ADGRF5Q8IZF2 1346 aa14.29□□□□□ -0.12
HMGCS1-202ENST00000433297 NOL7Q9UMY1 257 aaKnown RBP14.29□□□□□ -0.12
HMGCS1-202ENST00000433297 BMP2KLQ5H9B9 411 aa14.28□□□□□ -0.12
HMGCS1-202ENST00000433297 MAP7D2Q96T17 732 aa14.28□□□□□ -0.12
HMGCS1-202ENST00000433297 IPO8O15397 1037 aaKnown RBP14.28□□□□□ -0.12
HMGCS1-202ENST00000433297 TPRNQ4KMQ1 711 aa14.28□□□□□ -0.12
HMGCS1-202ENST00000433297 PLXNC1O60486 1568 aa14.28□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 78.5 ms