RNA–Protein interactions for RNA: ENST00000429896.6

PTCH1-207, Transcript of patched 1, humanhuman

TSL 1 (best) BASIC

Gene PTCH1, Length 6,563 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-207ENST00000429896 IPO8O15397 1037 aaKnown RBP16.51■□□□□ 0.23
PTCH1-207ENST00000429896 GOLGA2Q08379 1002 aa16.51■□□□□ 0.23
PTCH1-207ENST00000429896 SYTL4Q96C24 671 aaPredicted RBP16.51■□□□□ 0.23
PTCH1-207ENST00000429896 TTC5Q8N0Z6 440 aa16.51■□□□□ 0.23
PTCH1-207ENST00000429896 TOM1O60784 492 aa16.51■□□□□ 0.23
PTCH1-207ENST00000429896 OS9Q13438 667 aaPredicted RBP16.51■□□□□ 0.23
PTCH1-207ENST00000429896 PRDM11Q9NQV5 511 aa16.5■□□□□ 0.23
PTCH1-207ENST00000429896 USP35Q9P2H5 1018 aa16.5■□□□□ 0.23
PTCH1-207ENST00000429896 ARAP3Q8WWN8 1544 aa16.49■□□□□ 0.23
PTCH1-207ENST00000429896 ADGBQ8N7X0 1667 aa16.48■□□□□ 0.23
PTCH1-207ENST00000429896 SUPT16HQ9Y5B9 1047 aaKnown RBP16.48■□□□□ 0.23
PTCH1-207ENST00000429896 UBAP1LF5GYI3 381 aa16.48■□□□□ 0.23
PTCH1-207ENST00000429896 KCNH5Q8NCM2 988 aa16.47■□□□□ 0.23
PTCH1-207ENST00000429896 HMOX1P09601 288 aa16.47■□□□□ 0.23
PTCH1-207ENST00000429896 NCLP19338 710 aaKnown RBP16.47■□□□□ 0.23
PTCH1-207ENST00000429896 MTHFSP49914 203 aa16.47■□□□□ 0.23
PTCH1-207ENST00000429896 TOM1L2Q6ZVM7 507 aa16.47■□□□□ 0.23
PTCH1-207ENST00000429896 FOXO3O43524 673 aa16.46■□□□□ 0.23
PTCH1-207ENST00000429896 NCBP3Q53F19 620 aaKnown RBP16.46■□□□□ 0.23
PTCH1-207ENST00000429896 KDM5DQ9BY66 1539 aa16.45■□□□□ 0.22
PTCH1-207ENST00000429896 PZPP20742 1482 aa16.45■□□□□ 0.22
PTCH1-207ENST00000429896 TBX22Q9Y458 520 aa16.44■□□□□ 0.22
PTCH1-207ENST00000429896 KRT28Q7Z3Y7 464 aa16.44■□□□□ 0.22
PTCH1-207ENST00000429896 TATP17735 454 aaPredicted RBP16.43■□□□□ 0.22
PTCH1-207ENST00000429896 RIPK4P57078 832 aa16.43■□□□□ 0.22
PTCH1-207ENST00000429896 RUNDC1Q96C34 613 aa16.43■□□□□ 0.22
PTCH1-207ENST00000429896 PLEKHO1Q53GL0 409 aaPredicted RBP16.43■□□□□ 0.22
PTCH1-207ENST00000429896 ZC3H6P61129 1189 aaKnown RBP16.42■□□□□ 0.22
PTCH1-207ENST00000429896 TMX4Q9H1E5 349 aaPredicted RBP16.42■□□□□ 0.22
PTCH1-207ENST00000429896 NSD3Q9BZ95 1437 aa16.42■□□□□ 0.22
PTCH1-207ENST00000429896 PPP2R1AP30153 589 aa16.42■□□□□ 0.22
PTCH1-207ENST00000429896 SMC4Q9NTJ3 1288 aa16.42■□□□□ 0.22
PTCH1-207ENST00000429896 MSH5O43196 834 aa16.42■□□□□ 0.22
PTCH1-207ENST00000429896 PDE3BQ13370 1112 aa16.42■□□□□ 0.22
PTCH1-207ENST00000429896 ABCA9Q8IUA7 1624 aa16.41■□□□□ 0.22
PTCH1-207ENST00000429896 ARHGEF12Q9NZN5 1544 aa16.41■□□□□ 0.22
PTCH1-207ENST00000429896 LMTK3Q96Q04 1460 aa16.41■□□□□ 0.22
PTCH1-207ENST00000429896 C19orf44Q9H6X5 657 aa16.41■□□□□ 0.22
PTCH1-207ENST00000429896 TMEM2Q9UHN6 1383 aa16.4■□□□□ 0.22
PTCH1-207ENST00000429896 APAF1O14727 1248 aa16.4■□□□□ 0.22
PTCH1-207ENST00000429896 NPATQ14207 1427 aa16.4■□□□□ 0.22
PTCH1-207ENST00000429896 GAS2L2Q8NHY3 880 aa16.39■□□□□ 0.21
PTCH1-207ENST00000429896 PRAG1Q86YV5 1406 aa16.39■□□□□ 0.21
PTCH1-207ENST00000429896 ADAMTS2O95450 1211 aa16.38■□□□□ 0.21
PTCH1-207ENST00000429896 RRS1Q15050 365 aaKnown RBP16.38■□□□□ 0.21
PTCH1-207ENST00000429896 KCNA6P17658 529 aa16.38■□□□□ 0.21
PTCH1-207ENST00000429896 RCAN3Q9UKA8 241 aa16.38■□□□□ 0.21
PTCH1-207ENST00000429896 NGEFQ8N5V2 710 aa16.38■□□□□ 0.21
PTCH1-207ENST00000429896 NINLQ9Y2I6 1382 aa16.38■□□□□ 0.21
PTCH1-207ENST00000429896 HDAC5Q9UQL6 1122 aa16.38■□□□□ 0.21
PTCH1-207ENST00000429896 GTF2E1P29083 439 aaPredicted RBP16.37■□□□□ 0.21
PTCH1-207ENST00000429896 ITPRIPQ8IWB1 547 aa16.37■□□□□ 0.21
PTCH1-207ENST00000429896 EIF2AK4Q9P2K8 1649 aaKnown RBP16.37■□□□□ 0.21
PTCH1-207ENST00000429896 E9PSI1 815 aa16.37■□□□□ 0.21
PTCH1-207ENST00000429896 SPG7Q9UQ90 795 aa16.37■□□□□ 0.21
PTCH1-207ENST00000429896 ACEP12821 1306 aa16.36■□□□□ 0.21
PTCH1-207ENST00000429896 BRD4O60885 1362 aaPredicted RBP16.36■□□□□ 0.21
PTCH1-207ENST00000429896 NPHP3Q7Z494 1330 aa16.36■□□□□ 0.21
PTCH1-207ENST00000429896 NME9Q86XW9 330 aa16.36■□□□□ 0.21
PTCH1-207ENST00000429896 CASC1Q6TDU7 716 aa16.36■□□□□ 0.21
PTCH1-207ENST00000429896 SF3B2Q13435 895 aaKnown RBP16.35■□□□□ 0.21
PTCH1-207ENST00000429896 SLC4A10Q6U841 1118 aa16.35■□□□□ 0.21
PTCH1-207ENST00000429896 ELL2O00472 640 aaPredicted RBP16.35■□□□□ 0.21
PTCH1-207ENST00000429896 EIF2S2P20042 333 aaKnown RBP16.35■□□□□ 0.21
PTCH1-207ENST00000429896 RALGAPBQ86X10 1494 aa16.35■□□□□ 0.21
PTCH1-207ENST00000429896 NGLY1Q96IV0 654 aa16.34■□□□□ 0.21
PTCH1-207ENST00000429896 TSPYL4Q9UJ04 414 aa16.34■□□□□ 0.21
PTCH1-207ENST00000429896 PRKAR2BP31323 418 aa16.34■□□□□ 0.21
PTCH1-207ENST00000429896 YTHDC2Q9H6S0 1430 aaKnown RBP16.34■□□□□ 0.21
PTCH1-207ENST00000429896 CDC42BPAQ5VT25 1732 aa16.34■□□□□ 0.21
PTCH1-207ENST00000429896 SULT6B1Q6IMI4 303 aa16.33■□□□□ 0.21
PTCH1-207ENST00000429896 CHMP3Q9Y3E7 222 aa16.33■□□□□ 0.2
PTCH1-207ENST00000429896 GCC2Q8IWJ2 1684 aa16.33■□□□□ 0.2
PTCH1-207ENST00000429896 GNAI1P63096 354 aa16.33■□□□□ 0.2
PTCH1-207ENST00000429896 DDX54Q8TDD1 881 aaKnown RBP16.33■□□□□ 0.2
PTCH1-207ENST00000429896 TAF7LQ5H9L4 462 aa16.32■□□□□ 0.2
PTCH1-207ENST00000429896 PPIP5K1Q6PFW1 1433 aa16.31■□□□□ 0.2
PTCH1-207ENST00000429896 NLRP1Q9C000 1473 aa16.3■□□□□ 0.2
PTCH1-207ENST00000429896 UGGT1Q9NYU2 1555 aa16.3■□□□□ 0.2
PTCH1-207ENST00000429896 LTKP29376 864 aa16.3■□□□□ 0.2
PTCH1-207ENST00000429896 EFCAB6Q5THR3 1501 aa16.3■□□□□ 0.2
PTCH1-207ENST00000429896 ZNF530Q6P9A1 599 aaPredicted RBP16.3■□□□□ 0.2
PTCH1-207ENST00000429896 DISP3Q9P2K9 1392 aa16.3■□□□□ 0.2
PTCH1-207ENST00000429896 AMER1Q5JTC6 1135 aaPredicted RBP16.29■□□□□ 0.2
PTCH1-207ENST00000429896 ADAMTS8Q9UP79 889 aa16.29■□□□□ 0.2
PTCH1-207ENST00000429896 GLIPR1L2Q4G1C9 344 aa16.29■□□□□ 0.2
PTCH1-207ENST00000429896 NAP1L2Q9ULW6 460 aaPredicted RBP16.29■□□□□ 0.2
PTCH1-207ENST00000429896 ERVK-7P63135 1459 aa16.29■□□□□ 0.2
PTCH1-207ENST00000429896 PLCB2Q00722 1185 aa16.29■□□□□ 0.2
PTCH1-207ENST00000429896 TTC21AQ8NDW8 1320 aa16.28■□□□□ 0.2
PTCH1-207ENST00000429896 GLI2P10070 1586 aa16.28■□□□□ 0.2
PTCH1-207ENST00000429896 CABP4P57796 275 aa16.28■□□□□ 0.2
PTCH1-207ENST00000429896 PLXNC1O60486 1568 aa16.28■□□□□ 0.2
PTCH1-207ENST00000429896 HSP90AB1P08238 724 aaKnown RBP16.28■□□□□ 0.2
PTCH1-207ENST00000429896 RTN4Q9NQC3 1192 aaKnown RBP16.28■□□□□ 0.2
PTCH1-207ENST00000429896 NPHP4O75161 1426 aaPredicted RBP16.28■□□□□ 0.2
PTCH1-207ENST00000429896 NEXNQ0ZGT2 675 aa16.28■□□□□ 0.2
PTCH1-207ENST00000429896 NECTIN2Q92692 538 aa16.27■□□□□ 0.2
PTCH1-207ENST00000429896 RBM42Q9BTD8 480 aaKnown RBP16.27■□□□□ 0.2
PTCH1-207ENST00000429896 PPP4R2Q9NY27 417 aa16.27■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms