RNA–Protein interactions for RNA: ENST00000401607.6

CPNE1-205, Transcript of copine 1, humanhuman

TSL 5

Gene CPNE1, Length 1,795 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-205ENST00000401607 MINK1Q8N4C8 1332 aaPredicted RBP34.87■■■■□ 3.17
CPNE1-205ENST00000401607 BRD4O60885 1362 aaPredicted RBP34.86■■■■□ 3.17
CPNE1-205ENST00000401607 PLEKHH1Q9ULM0 1364 aa34.86■■■■□ 3.17
CPNE1-205ENST00000401607 ZNF142P52746 1687 aaPredicted RBP34.85■■■■□ 3.17
CPNE1-205ENST00000401607 NPC1L1Q9UHC9 1359 aa34.85■■■■□ 3.17
CPNE1-205ENST00000401607 CARD14Q9BXL6 1004 aa34.85■■■■□ 3.17
CPNE1-205ENST00000401607 CPS1P31327 1500 aa34.84■■■■□ 3.17
CPNE1-205ENST00000401607 CABP2Q9NPB3 220 aa34.84■■■■□ 3.17
CPNE1-205ENST00000401607 FAM9BQ8IZU0 186 aa34.83■■■■□ 3.17
CPNE1-205ENST00000401607 SLC12A5Q9H2X9 1139 aa34.83■■■■□ 3.17
CPNE1-205ENST00000401607 WAPLQ7Z5K2 1190 aa34.82■■■■□ 3.17
CPNE1-205ENST00000401607 TMC1Q8TDI8 760 aa34.81■■■■□ 3.16
CPNE1-205ENST00000401607 FAM135BQ49AJ0 1406 aa34.8■■■■□ 3.16
CPNE1-205ENST00000401607 NLRP13Q86W25 1043 aa34.8■■■■□ 3.16
CPNE1-205ENST00000401607 SIRT1Q96EB6 747 aa34.79■■■■□ 3.16
CPNE1-205ENST00000401607 SRPK2P78362 688 aaKnown RBP34.77■■■■□ 3.16
CPNE1-205ENST00000401607 PNISRQ8TF01 805 aaKnown RBP34.75■■■■□ 3.15
CPNE1-205ENST00000401607 ATAD2Q6PL18 1390 aa34.75■■■■□ 3.15
CPNE1-205ENST00000401607 HNRNPUQ00839 825 aaKnown RBP eCLIP34.74■■■■□ 3.15
CPNE1-205ENST00000401607 DIP2AQ14689 1571 aa34.74■■■■□ 3.15
CPNE1-205ENST00000401607 NSD3Q9BZ95 1437 aa34.74■■■■□ 3.15
CPNE1-205ENST00000401607 SLC26A8Q96RN1 970 aa34.74■■■■□ 3.15
CPNE1-205ENST00000401607 NINLQ9Y2I6 1382 aa34.74■■■■□ 3.15
CPNE1-205ENST00000401607 ANKRD36BQ8N2N9 1353 aa34.73■■■■□ 3.15
CPNE1-205ENST00000401607 SETD1BQ9UPS6 1966 aaKnown RBP34.73■■■■□ 3.15
CPNE1-205ENST00000401607 PTPRUQ92729 1446 aa34.73■■■■□ 3.15
CPNE1-205ENST00000401607 CDK19Q9BWU1 502 aa34.72■■■■□ 3.15
CPNE1-205ENST00000401607 USP32Q8NFA0 1604 aa34.71■■■■□ 3.15
CPNE1-205ENST00000401607 ROBO2Q9HCK4 1378 aa34.71■■■■□ 3.15
CPNE1-205ENST00000401607 TBX22Q9Y458 520 aa34.71■■■■□ 3.15
CPNE1-205ENST00000401607 SCAF1Q9H7N4 1312 aaKnown RBP34.68■■■■□ 3.14
CPNE1-205ENST00000401607 PPP2R1AP30153 589 aa34.66■■■■□ 3.14
CPNE1-205ENST00000401607 CD163L1Q9NR16 1453 aa34.63■■■■□ 3.13
CPNE1-205ENST00000401607 A0A1W2PP64 1363 aa34.63■■■■□ 3.13
CPNE1-205ENST00000401607 WASLO00401 505 aaPredicted RBP34.61■■■■□ 3.13
CPNE1-205ENST00000401607 SIPA1L2Q9P2F8 1722 aaPredicted RBP34.6■■■■□ 3.13
CPNE1-205ENST00000401607 ADGRB2O60241 1585 aa34.6■■■■□ 3.13
CPNE1-205ENST00000401607 XRN1Q8IZH2 1706 aaKnown RBP34.58■■■■□ 3.13
CPNE1-205ENST00000401607 ANKLE2Q86XL3 938 aa34.58■■■■□ 3.13
CPNE1-205ENST00000401607 AMOTL2Q9Y2J4 779 aa34.58■■■■□ 3.13
CPNE1-205ENST00000401607 GTF3C3Q9Y5Q9 886 aa34.58■■■■□ 3.13
CPNE1-205ENST00000401607 PTCH1Q13635 1447 aa34.58■■■■□ 3.13
CPNE1-205ENST00000401607 CGNL1Q0VF96 1302 aa34.55■■■■□ 3.12
CPNE1-205ENST00000401607 TERF2IPQ9NYB0 399 aa34.54■■■■□ 3.12
CPNE1-205ENST00000401607 CABP1Q9NZU7 370 aa34.54■■■■□ 3.12
CPNE1-205ENST00000401607 PIK3R4Q99570 1358 aa34.54■■■■□ 3.12
CPNE1-205ENST00000401607 ZBED9Q6R2W3 1325 aa34.53■■■■□ 3.12
CPNE1-205ENST00000401607 ATP7BP35670 1465 aa34.52■■■■□ 3.12
CPNE1-205ENST00000401607 NSD2O96028 1365 aa34.52■■■■□ 3.12
CPNE1-205ENST00000401607 HDGFL2Q7Z4V5 671 aaPredicted RBP34.47■■■■□ 3.11
CPNE1-205ENST00000401607 MORC1Q86VD1 984 aa34.47■■■■□ 3.11
CPNE1-205ENST00000401607 PPIP5K1Q6PFW1 1433 aa34.47■■■■□ 3.11
CPNE1-205ENST00000401607 NUDT16Q96DE0 195 aaKnown RBP34.46■■■■□ 3.11
CPNE1-205ENST00000401607 INSRP06213 1382 aa34.44■■■■□ 3.1
CPNE1-205ENST00000401607 PRR36Q9H6K5 1346 aa34.44■■■■□ 3.1
CPNE1-205ENST00000401607 NPHP4O75161 1426 aaPredicted RBP34.42■■■■□ 3.1
CPNE1-205ENST00000401607 CHD2O14647 1828 aaKnown RBP34.42■■■■□ 3.1
CPNE1-205ENST00000401607 CPSF1Q10570 1443 aaKnown RBP34.42■■■■□ 3.1
CPNE1-205ENST00000401607 KCNA6P17658 529 aa34.41■■■■□ 3.1
CPNE1-205ENST00000401607 CDC42BPGQ6DT37 1551 aa34.41■■■■□ 3.1
CPNE1-205ENST00000401607 ANKRD26Q9UPS8 1709 aa34.41■■■■□ 3.1
CPNE1-205ENST00000401607 CCDC61Q9Y6R9 512 aa34.41■■■■□ 3.1
CPNE1-205ENST00000401607 TOPAZ1Q8N9V7 1692 aa34.4■■■■□ 3.1
CPNE1-205ENST00000401607 BLMP54132 1417 aaPredicted RBP34.4■■■■□ 3.1
CPNE1-205ENST00000401607 NCKAP5LQ9HCH0 1330 aa34.39■■■■□ 3.1
CPNE1-205ENST00000401607 KIF20BQ96Q89 1820 aa34.38■■■■□ 3.09
CPNE1-205ENST00000401607 FYB1O15117 783 aa34.36■■■■□ 3.09
CPNE1-205ENST00000401607 POLR3AO14802 1390 aaPredicted RBP34.35■■■■□ 3.09
CPNE1-205ENST00000401607 AKAP12Q02952 1782 aa34.35■■■■□ 3.09
CPNE1-205ENST00000401607 MON2Q7Z3U7 1717 aa34.35■■■■□ 3.09
CPNE1-205ENST00000401607 TNNT2P45379 298 aaPredicted RBP34.34■■■■□ 3.09
CPNE1-205ENST00000401607 GGNBP2Q9H3C7 697 aa34.34■■■■□ 3.09
CPNE1-205ENST00000401607 ITSN1Q15811 1721 aa34.33■■■■□ 3.09
CPNE1-205ENST00000401607 ADAMTS8Q9UP79 889 aa34.32■■■■□ 3.08
CPNE1-205ENST00000401607 EDC4Q6P2E9 1401 aaKnown RBP34.31■■■■□ 3.08
CPNE1-205ENST00000401607 SENP3-EIF4A1A0A087X0R7 540 aa34.3■■■■□ 3.08
CPNE1-205ENST00000401607 WDR43Q15061 677 aaKnown RBP eCLIP34.3■■■■□ 3.08
CPNE1-205ENST00000401607 NKTRP30414 1462 aaKnown RBP34.27■■■■□ 3.08
CPNE1-205ENST00000401607 NUTM2FA1L443 756 aa34.26■■■■□ 3.07
CPNE1-205ENST00000401607 SHPRHQ149N8 1683 aa34.26■■■■□ 3.07
CPNE1-205ENST00000401607 KDM4FA0A1W2PPD8 638 aa34.25■■■■□ 3.07
CPNE1-205ENST00000401607 SUGP2Q8IX01 1082 aaKnown RBP eCLIP34.25■■■■□ 3.07
CPNE1-205ENST00000401607 PLEKHG3A1L390 1219 aa34.24■■■■□ 3.07
CPNE1-205ENST00000401607 MTHFSP49914 203 aa34.24■■■■□ 3.07
CPNE1-205ENST00000401607 NALCNQ8IZF0 1738 aa34.23■■■■□ 3.07
CPNE1-205ENST00000401607 NWD1Q149M9 1564 aa34.23■■■■□ 3.07
CPNE1-205ENST00000401607 ZNF692Q9BU19 519 aaPredicted RBP34.22■■■■□ 3.07
CPNE1-205ENST00000401607 FMN2Q9NZ56 1722 aa34.22■■■■□ 3.07
CPNE1-205ENST00000401607 NRKQ7Z2Y5 1582 aa34.21■■■■□ 3.07
CPNE1-205ENST00000401607 RGPD8O14715 1765 aaPredicted RBP34.19■■■■□ 3.06
CPNE1-205ENST00000401607 ACEP12821 1306 aa34.19■■■■□ 3.06
CPNE1-205ENST00000401607 ANKARQ7Z5J8 1434 aa34.19■■■■□ 3.06
CPNE1-205ENST00000401607 SMG6Q86US8 1419 aaKnown RBP34.17■■■■□ 3.06
CPNE1-205ENST00000401607 NME9Q86XW9 330 aa34.16■■■■□ 3.06
CPNE1-205ENST00000401607 CFAP53Q96M91 514 aa34.14■■■■□ 3.06
CPNE1-205ENST00000401607 USP6P35125 1406 aa34.14■■■■□ 3.06
CPNE1-205ENST00000401607 ADGRL3Q9HAR2 1447 aa34.12■■■■□ 3.05
CPNE1-205ENST00000401607 SALL2Q9Y467 1007 aaPredicted RBP34.12■■■■□ 3.05
CPNE1-205ENST00000401607 COL3A1P02461 1466 aaPredicted RBP34.11■■■■□ 3.05
CPNE1-205ENST00000401607 RBM33Q96EV2 1170 aaKnown RBP34.11■■■■□ 3.05
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms