RNA–Protein interactions for RNA: ENST00000397906.6

TTC28-201, Transcript of tetratricopeptide repeat domain 28, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene TTC28, Length 11,795 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28-201ENST00000397906 NESP48681 1621 aa13.86□□□□□ -0.19
TTC28-201ENST00000397906 CENPQQ7L2Z9 268 aaPredicted RBP13.86□□□□□ -0.19
TTC28-201ENST00000397906 RRP1P56182 461 aaKnown RBP13.85□□□□□ -0.19
TTC28-201ENST00000397906 IGF1RP08069 1367 aa13.85□□□□□ -0.19
TTC28-201ENST00000397906 ROCK1Q13464 1354 aa13.85□□□□□ -0.19
TTC28-201ENST00000397906 CCAR1Q8IX12 1150 aaKnown RBP13.85□□□□□ -0.19
TTC28-201ENST00000397906 RAPGEF3O95398 923 aa13.85□□□□□ -0.19
TTC28-201ENST00000397906 DNAJC2Q99543 621 aaKnown RBP13.85□□□□□ -0.19
TTC28-201ENST00000397906 GOLGA6L19H0YKK7 550 aa13.84□□□□□ -0.19
TTC28-201ENST00000397906 SYNJ2O15056 1496 aa13.84□□□□□ -0.19
TTC28-201ENST00000397906 FAM161AQ3B820 660 aa13.84□□□□□ -0.19
TTC28-201ENST00000397906 CCAR2Q8N163 923 aaKnown RBP13.84□□□□□ -0.19
TTC28-201ENST00000397906 GNAI1P63096 354 aa13.84□□□□□ -0.19
TTC28-201ENST00000397906 FGD6Q6ZV73 1430 aa13.84□□□□□ -0.19
TTC28-201ENST00000397906 CFAP70Q5T0N1 1121 aa13.84□□□□□ -0.19
TTC28-201ENST00000397906 STK11IPQ8N1F8 1099 aa13.83□□□□□ -0.2
TTC28-201ENST00000397906 BECN2A8MW95 431 aa13.83□□□□□ -0.2
TTC28-201ENST00000397906 API5Q9BZZ5 524 aaKnown RBP13.83□□□□□ -0.2
TTC28-201ENST00000397906 UBTFL1P0CB47 393 aaPredicted RBP13.83□□□□□ -0.2
TTC28-201ENST00000397906 ANKRD50Q9ULJ7 1429 aa13.83□□□□□ -0.2
TTC28-201ENST00000397906 GRIN2BQ13224 1484 aa13.83□□□□□ -0.2
TTC28-201ENST00000397906 GOLGA6L1Q8N7Z2 621 aa13.82□□□□□ -0.2
TTC28-201ENST00000397906 SLC26A8Q96RN1 970 aa13.82□□□□□ -0.2
TTC28-201ENST00000397906 REC8O95072 547 aa13.82□□□□□ -0.2
TTC28-201ENST00000397906 CABP4P57796 275 aa13.82□□□□□ -0.2
TTC28-201ENST00000397906 ATP6V1DQ9Y5K8 247 aa13.82□□□□□ -0.2
TTC28-201ENST00000397906 RNF20Q5VTR2 975 aa13.81□□□□□ -0.2
TTC28-201ENST00000397906 THEMISQ8N1K5 641 aaPredicted RBP13.81□□□□□ -0.2
TTC28-201ENST00000397906 VPS37CA5D8V6 355 aaPredicted RBP13.81□□□□□ -0.2
TTC28-201ENST00000397906 MTHFSP49914 203 aa13.81□□□□□ -0.2
TTC28-201ENST00000397906 IPO9Q96P70 1041 aaKnown RBP13.81□□□□□ -0.2
TTC28-201ENST00000397906 DDX49Q9Y6V7 483 aaKnown RBP13.81□□□□□ -0.2
TTC28-201ENST00000397906 RALYLQ86SE5 291 aaKnown RBP13.81□□□□□ -0.2
TTC28-201ENST00000397906 ERC2O15083 957 aa13.8□□□□□ -0.2
TTC28-201ENST00000397906 BICD2Q8TD16 824 aa13.8□□□□□ -0.2
TTC28-201ENST00000397906 LNPKQ9C0E8 428 aa13.8□□□□□ -0.2
TTC28-201ENST00000397906 RBM5P52756 815 aaKnown RBP eCLIP13.8□□□□□ -0.2
TTC28-201ENST00000397906 ATP2B2Q01814 1243 aa13.8□□□□□ -0.2
TTC28-201ENST00000397906 RRBP1Q9P2E9 1410 aaKnown RBP13.8□□□□□ -0.2
TTC28-201ENST00000397906 NCOA2Q15596 1464 aa13.8□□□□□ -0.2
TTC28-201ENST00000397906 SCAPERQ9BY12 1400 aa13.8□□□□□ -0.2
TTC28-201ENST00000397906 TATP17735 454 aaPredicted RBP13.8□□□□□ -0.2
TTC28-201ENST00000397906 PANK1Q8TE04 598 aa13.8□□□□□ -0.2
TTC28-201ENST00000397906 CNNM1Q9NRU3 951 aa13.8□□□□□ -0.2
TTC28-201ENST00000397906 MYL6BP14649 208 aa13.8□□□□□ -0.2
TTC28-201ENST00000397906 WASHC2AQ641Q2 1341 aa13.8□□□□□ -0.2
TTC28-201ENST00000397906 CHMP4CQ96CF2 233 aa13.79□□□□□ -0.2
TTC28-201ENST00000397906 TPM1P09493 284 aa13.79□□□□□ -0.2
TTC28-201ENST00000397906 RRP12Q5JTH9 1297 aaKnown RBP13.79□□□□□ -0.2
TTC28-201ENST00000397906 PLEKHO1Q53GL0 409 aaPredicted RBP13.79□□□□□ -0.2
TTC28-201ENST00000397906 BICDL1Q6ZP65 573 aa13.79□□□□□ -0.2
TTC28-201ENST00000397906 CCDC47Q96A33 483 aaKnown RBP13.79□□□□□ -0.2
TTC28-201ENST00000397906 CDK19Q9BWU1 502 aa13.78□□□□□ -0.2
TTC28-201ENST00000397906 CC2D2AQ9P2K1 1620 aa13.78□□□□□ -0.2
TTC28-201ENST00000397906 TMEM132AQ24JP5 1023 aa13.78□□□□□ -0.2
TTC28-201ENST00000397906 PRKAR2BP31323 418 aa13.78□□□□□ -0.2
TTC28-201ENST00000397906 FYCO1Q9BQS8 1478 aa13.77□□□□□ -0.2
TTC28-201ENST00000397906 MRC2Q9UBG0 1479 aa13.77□□□□□ -0.2
TTC28-201ENST00000397906 CCDC30Q5VVM6 783 aa13.77□□□□□ -0.21
TTC28-201ENST00000397906 FSD1Q9BTV5 496 aa13.77□□□□□ -0.21
TTC28-201ENST00000397906 SIL1Q9H173 461 aa13.77□□□□□ -0.21
TTC28-201ENST00000397906 HSP90AB4PQ58FF6 505 aa13.77□□□□□ -0.21
TTC28-201ENST00000397906 ANKLE2Q86XL3 938 aa13.77□□□□□ -0.21
TTC28-201ENST00000397906 DDX11L8A8MPP1 907 aa13.76□□□□□ -0.21
TTC28-201ENST00000397906 TTC39AQ5SRH9 613 aa13.76□□□□□ -0.21
TTC28-201ENST00000397906 TBC1D2BQ9UPU7 963 aa13.76□□□□□ -0.21
TTC28-201ENST00000397906 PDE4AP27815 886 aa13.75□□□□□ -0.21
TTC28-201ENST00000397906 PRDM11Q9NQV5 511 aa13.75□□□□□ -0.21
TTC28-201ENST00000397906 SNAPC4Q5SXM2 1469 aa13.75□□□□□ -0.21
TTC28-201ENST00000397906 SAFBQ15424 915 aaKnown RBP eCLIP13.75□□□□□ -0.217e-7■□□□□ 8.9
TTC28-201ENST00000397906 LRRC9Q6ZRR7 1453 aa13.75□□□□□ -0.21
TTC28-201ENST00000397906 C1orf115Q9H7X2 142 aa13.75□□□□□ -0.21
TTC28-201ENST00000397906 ZNF592Q92610 1267 aa13.75□□□□□ -0.21
TTC28-201ENST00000397906 CABP1Q9NZU7 370 aa13.75□□□□□ -0.21
TTC28-201ENST00000397906 KIF7Q2M1P5 1343 aa13.75□□□□□ -0.21
TTC28-201ENST00000397906 INTS3Q68E01 1043 aaKnown RBP13.75□□□□□ -0.21
TTC28-201ENST00000397906 GAS2L2Q8NHY3 880 aa13.74□□□□□ -0.21
TTC28-201ENST00000397906 ZBED9Q6R2W3 1325 aa13.74□□□□□ -0.21
TTC28-201ENST00000397906 ZC3H6P61129 1189 aaKnown RBP13.74□□□□□ -0.21
TTC28-201ENST00000397906 BRMS1Q9HCU9 246 aa13.74□□□□□ -0.21
TTC28-201ENST00000397906 SPINK5Q9NQ38 1064 aaPredicted RBP13.74□□□□□ -0.21
TTC28-201ENST00000397906 SMC3Q9UQE7 1217 aa13.74□□□□□ -0.21
TTC28-201ENST00000397906 R3HCC1Q9Y3T6 440 aaKnown RBP13.74□□□□□ -0.21
TTC28-201ENST00000397906 ANKRD20A12PQ8NF67 263 aa13.73□□□□□ -0.21
TTC28-201ENST00000397906 RRS1Q15050 365 aaKnown RBP13.73□□□□□ -0.21
TTC28-201ENST00000397906 HOOK1Q9UJC3 728 aaKnown RBP13.73□□□□□ -0.21
TTC28-201ENST00000397906 SULT6B1Q6IMI4 303 aa13.73□□□□□ -0.21
TTC28-201ENST00000397906 CFTRP13569 1480 aa13.73□□□□□ -0.21
TTC28-201ENST00000397906 NINLQ9Y2I6 1382 aa13.73□□□□□ -0.21
TTC28-201ENST00000397906 CNTLNQ9NXG0 1405 aa13.73□□□□□ -0.21
TTC28-201ENST00000397906 SURF6O75683 361 aaKnown RBP13.72□□□□□ -0.21
TTC28-201ENST00000397906 NAP1L1P55209 391 aaKnown RBP13.72□□□□□ -0.21
TTC28-201ENST00000397906 ZNF530Q6P9A1 599 aaPredicted RBP13.72□□□□□ -0.21
TTC28-201ENST00000397906 UTP3Q9NQZ2 479 aaKnown RBP eCLIP13.72□□□□□ -0.213e-9■■■■■ 210.4
TTC28-201ENST00000397906 SPG7Q9UQ90 795 aa13.72□□□□□ -0.21
TTC28-201ENST00000397906 IPO7O95373 1038 aaKnown RBP13.71□□□□□ -0.21
TTC28-201ENST00000397906 CT47A1Q5JQC4 288 aaPredicted RBP13.71□□□□□ -0.21
TTC28-201ENST00000397906 CNTROBQ8N137 903 aa13.71□□□□□ -0.21
TTC28-201ENST00000397906 KIF21BO75037 1637 aa13.71□□□□□ -0.21
TTC28-201ENST00000397906 ATP2B1P20020 1258 aa13.71□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 63.1 ms