RNA–Protein interactions for RNA: ENST00000380075.6

TRIM54-202, Transcript of tripartite motif containing 54, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM54, Length 1,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-202ENST00000380075 PIK3C2GO75747 1445 aa28.9■■■□□ 2.22
TRIM54-202ENST00000380075 NRXN3Q9Y4C0 1643 aa28.89■■■□□ 2.21
TRIM54-202ENST00000380075 TBX22Q9Y458 520 aa28.88■■■□□ 2.21
TRIM54-202ENST00000380075 SBNO2Q9Y2G9 1366 aa28.88■■■□□ 2.21
TRIM54-202ENST00000380075 CC2D1BQ5T0F9 858 aaKnown RBP28.88■■■□□ 2.21
TRIM54-202ENST00000380075 CFAP70Q5T0N1 1121 aa28.88■■■□□ 2.21
TRIM54-202ENST00000380075 NPC1L1Q9UHC9 1359 aa28.87■■■□□ 2.21
TRIM54-202ENST00000380075 KNSTRNQ9Y448 316 aa28.86■■■□□ 2.21
TRIM54-202ENST00000380075 IRX6P78412 446 aaPredicted RBP28.86■■■□□ 2.21
TRIM54-202ENST00000380075 RNF123Q5XPI4 1314 aa28.86■■■□□ 2.21
TRIM54-202ENST00000380075 MYOM1P52179 1685 aa28.84■■■□□ 2.21
TRIM54-202ENST00000380075 C14orf93Q9H972 538 aaKnown RBP28.84■■■□□ 2.21
TRIM54-202ENST00000380075 ALKQ9UM73 1620 aa28.83■■■□□ 2.21
TRIM54-202ENST00000380075 METP08581 1390 aa28.83■■■□□ 2.21
TRIM54-202ENST00000380075 ASXL1Q8IXJ9 1541 aa28.83■■■□□ 2.21
TRIM54-202ENST00000380075 PDE3BQ13370 1112 aa28.82■■■□□ 2.2
TRIM54-202ENST00000380075 ZNF335Q9H4Z2 1342 aaPredicted RBP28.81■■■□□ 2.2
TRIM54-202ENST00000380075 BLMP54132 1417 aaPredicted RBP28.81■■■□□ 2.2
TRIM54-202ENST00000380075 AMER1Q5JTC6 1135 aaPredicted RBP28.79■■■□□ 2.2
TRIM54-202ENST00000380075 TMEM132EQ6IEE7 984 aa28.79■■■□□ 2.2
TRIM54-202ENST00000380075 DIP2AQ14689 1571 aa28.79■■■□□ 2.2
TRIM54-202ENST00000380075 PTPRUQ92729 1446 aa28.74■■■□□ 2.19
TRIM54-202ENST00000380075 KCNA6P17658 529 aa28.74■■■□□ 2.19
TRIM54-202ENST00000380075 SETD1AO15047 1707 aaKnown RBP28.74■■■□□ 2.19
TRIM54-202ENST00000380075 PIK3R4Q99570 1358 aa28.73■■■□□ 2.19
TRIM54-202ENST00000380075 ADGRB1O14514 1584 aa28.73■■■□□ 2.19
TRIM54-202ENST00000380075 AMOTL2Q9Y2J4 779 aa28.73■■■□□ 2.19
TRIM54-202ENST00000380075 CENPJQ9HC77 1338 aaPredicted RBP28.72■■■□□ 2.19
TRIM54-202ENST00000380075 PPP2R1AP30153 589 aa28.71■■■□□ 2.19
TRIM54-202ENST00000380075 STK26Q9P289 416 aa28.7■■■□□ 2.18
TRIM54-202ENST00000380075 STRCP1A6NGW2 1772 aa28.66■■■□□ 2.18
TRIM54-202ENST00000380075 CHD2O14647 1828 aaKnown RBP28.65■■■□□ 2.18
TRIM54-202ENST00000380075 YTHDC2Q9H6S0 1430 aaKnown RBP28.65■■■□□ 2.18
TRIM54-202ENST00000380075 LTBP4Q8N2S1 1624 aa28.63■■■□□ 2.17
TRIM54-202ENST00000380075 RBM33Q96EV2 1170 aaKnown RBP28.63■■■□□ 2.17
TRIM54-202ENST00000380075 QRICH2Q9H0J4 1663 aa28.63■■■□□ 2.17
TRIM54-202ENST00000380075 NWD1Q149M9 1564 aa28.62■■■□□ 2.17
TRIM54-202ENST00000380075 PUS7Q96PZ0 661 aaKnown RBP28.61■■■□□ 2.17
TRIM54-202ENST00000380075 ABCC11Q96J66 1382 aa28.61■■■□□ 2.17
TRIM54-202ENST00000380075 PROSER2Q86WR7 435 aaPredicted RBP28.61■■■□□ 2.17
TRIM54-202ENST00000380075 TRAK1Q9UPV9 953 aa28.61■■■□□ 2.17
TRIM54-202ENST00000380075 WDR43Q15061 677 aaKnown RBP eCLIP28.6■■■□□ 2.17
TRIM54-202ENST00000380075 XRN1Q8IZH2 1706 aaKnown RBP28.59■■■□□ 2.17
TRIM54-202ENST00000380075 ROBO2Q9HCK4 1378 aa28.59■■■□□ 2.17
TRIM54-202ENST00000380075 CPS1P31327 1500 aa28.57■■■□□ 2.16
TRIM54-202ENST00000380075 NKTRP30414 1462 aaKnown RBP28.57■■■□□ 2.16
TRIM54-202ENST00000380075 ADAMTS8Q9UP79 889 aa28.57■■■□□ 2.16
TRIM54-202ENST00000380075 RCAN3Q9UKA8 241 aa28.56■■■□□ 2.16
TRIM54-202ENST00000380075 LRRC7Q96NW7 1537 aa28.56■■■□□ 2.16
TRIM54-202ENST00000380075 TECPR2O15040 1411 aa28.56■■■□□ 2.16
TRIM54-202ENST00000380075 SENP3-EIF4A1A0A087X0R7 540 aa28.55■■■□□ 2.16
TRIM54-202ENST00000380075 B4GALNT3Q6L9W6 998 aa28.55■■■□□ 2.16
TRIM54-202ENST00000380075 WAPLQ7Z5K2 1190 aa28.55■■■□□ 2.16
TRIM54-202ENST00000380075 RBM19Q9Y4C8 960 aaKnown RBP28.55■■■□□ 2.16
TRIM54-202ENST00000380075 TMEM94Q12767 1356 aa28.54■■■□□ 2.16
TRIM54-202ENST00000380075 RRP1P56182 461 aaKnown RBP28.53■■■□□ 2.16
TRIM54-202ENST00000380075 PTCH1Q13635 1447 aa28.53■■■□□ 2.16
TRIM54-202ENST00000380075 CARD14Q9BXL6 1004 aa28.53■■■□□ 2.16
TRIM54-202ENST00000380075 ARHGEF28Q8N1W1 1705 aaKnown RBP28.52■■■□□ 2.16
TRIM54-202ENST00000380075 PRAM1Q96QH2 718 aa28.51■■■□□ 2.16
TRIM54-202ENST00000380075 SALL2Q9Y467 1007 aaPredicted RBP28.51■■■□□ 2.16
TRIM54-202ENST00000380075 PLEKHH1Q9ULM0 1364 aa28.51■■■□□ 2.15
TRIM54-202ENST00000380075 USP32Q8NFA0 1604 aa28.5■■■□□ 2.15
TRIM54-202ENST00000380075 SIRT1Q96EB6 747 aa28.5■■■□□ 2.15
TRIM54-202ENST00000380075 SAFB2Q14151 953 aaKnown RBP eCLIP28.5■■■□□ 2.15
TRIM54-202ENST00000380075 KNDC1Q76NI1 1749 aa28.48■■■□□ 2.15
TRIM54-202ENST00000380075 FAM135BQ49AJ0 1406 aa28.48■■■□□ 2.15
TRIM54-202ENST00000380075 EVC2Q86UK5 1308 aa28.48■■■□□ 2.15
TRIM54-202ENST00000380075 CERKQ8TCT0 537 aa28.48■■■□□ 2.15
TRIM54-202ENST00000380075 POGKQ9P215 609 aa28.48■■■□□ 2.15
TRIM54-202ENST00000380075 DLC1Q96QB1 1528 aa28.47■■■□□ 2.15
TRIM54-202ENST00000380075 C14orf37Q86TY3 774 aa28.46■■■□□ 2.15
TRIM54-202ENST00000380075 CCDC136Q96JN2 1154 aa28.46■■■□□ 2.15
TRIM54-202ENST00000380075 NSD3Q9BZ95 1437 aa28.45■■■□□ 2.15
TRIM54-202ENST00000380075 CDCA7LQ96GN5 454 aa28.45■■■□□ 2.14
TRIM54-202ENST00000380075 NGEFQ8N5V2 710 aa28.44■■■□□ 2.14
TRIM54-202ENST00000380075 POLR3AO14802 1390 aaPredicted RBP28.43■■■□□ 2.14
TRIM54-202ENST00000380075 TULP4Q9NRJ4 1543 aa28.42■■■□□ 2.14
TRIM54-202ENST00000380075 NCOA3Q9Y6Q9 1424 aa28.42■■■□□ 2.14
TRIM54-202ENST00000380075 ZNF521Q96K83 1311 aa28.41■■■□□ 2.14
TRIM54-202ENST00000380075 NINLQ9Y2I6 1382 aa28.41■■■□□ 2.14
TRIM54-202ENST00000380075 XIRP1Q702N8 1843 aaKnown RBP28.41■■■□□ 2.14
TRIM54-202ENST00000380075 C19orf44Q9H6X5 657 aa28.39■■■□□ 2.14
TRIM54-202ENST00000380075 NSD2O96028 1365 aa28.39■■■□□ 2.13
TRIM54-202ENST00000380075 ANKRD36BQ8N2N9 1353 aa28.39■■■□□ 2.13
TRIM54-202ENST00000380075 SLC12A5Q9H2X9 1139 aa28.39■■■□□ 2.13
TRIM54-202ENST00000380075 ADGRL3Q9HAR2 1447 aa28.37■■■□□ 2.13
TRIM54-202ENST00000380075 MINK1Q8N4C8 1332 aaPredicted RBP28.37■■■□□ 2.13
TRIM54-202ENST00000380075 CGNL1Q0VF96 1302 aa28.36■■■□□ 2.13
TRIM54-202ENST00000380075 MSH6P52701 1360 aa28.36■■■□□ 2.13
TRIM54-202ENST00000380075 SIPA1L2Q9P2F8 1722 aaPredicted RBP28.36■■■□□ 2.13
TRIM54-202ENST00000380075 MORC1Q86VD1 984 aa28.35■■■□□ 2.13
TRIM54-202ENST00000380075 GOLGA2Q08379 1002 aa28.35■■■□□ 2.13
TRIM54-202ENST00000380075 NALCNQ8IZF0 1738 aa28.33■■■□□ 2.13
TRIM54-202ENST00000380075 IQSEC2Q5JU85 1478 aa28.32■■■□□ 2.12
TRIM54-202ENST00000380075 ATF3P18847 181 aa28.31■■■□□ 2.12
TRIM54-202ENST00000380075 DUSP27Q5VZP5 1158 aa28.31■■■□□ 2.12
TRIM54-202ENST00000380075 FANCIQ9NVI1 1328 aa28.3■■■□□ 2.12
TRIM54-202ENST00000380075 ATAD2Q6PL18 1390 aa28.29■■■□□ 2.12
TRIM54-202ENST00000380075 MYT1Q01538 1121 aa28.29■■■□□ 2.12
Retrieved 100 of 20,778 RNA–protein pairs in 8.5 ms