RNA–Protein interactions for RNA: ENST00000367256.9

SYNE1-208, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 10,742 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-208ENST00000367256 ZRSR2Q15696 482 aaKnown RBP8.79□□□□□ -1
SYNE1-208ENST00000367256 INTS3Q68E01 1043 aaKnown RBP8.79□□□□□ -1
SYNE1-208ENST00000367256 CRBNQ96SW2 442 aa8.79□□□□□ -1
SYNE1-208ENST00000367256 CWC22Q9HCG8 908 aaKnown RBP8.79□□□□□ -1
SYNE1-208ENST00000367256 WIZO95785 1651 aa8.79□□□□□ -1
SYNE1-208ENST00000367256 BRD4O60885 1362 aaPredicted RBP8.79□□□□□ -1
SYNE1-208ENST00000367256 API5Q9BZZ5 524 aaKnown RBP8.79□□□□□ -1
SYNE1-208ENST00000367256 COG3Q96JB2 828 aa8.79□□□□□ -1
SYNE1-208ENST00000367256 MCM2P49736 904 aa8.79□□□□□ -1
SYNE1-208ENST00000367256 LEKR1Q6ZMV7 388 aa8.79□□□□□ -1
SYNE1-208ENST00000367256 ZFYVE27Q5T4F4 411 aa8.79□□□□□ -1
SYNE1-208ENST00000367256 EFCAB2Q5VUJ9 269 aa8.79□□□□□ -1
SYNE1-208ENST00000367256 MROH2BQ7Z745 1585 aa8.78□□□□□ -1
SYNE1-208ENST00000367256 OFD1O75665 1012 aa8.78□□□□□ -1
SYNE1-208ENST00000367256 TTLL5Q6EMB2 1281 aa8.78□□□□□ -1
SYNE1-208ENST00000367256 NFKBIBQ15653 356 aa8.78□□□□□ -1
SYNE1-208ENST00000367256 CECR2Q9BXF3 1484 aa8.78□□□□□ -1
SYNE1-208ENST00000367256 GOLGA6L10A6NI86 522 aa8.78□□□□□ -1
SYNE1-208ENST00000367256 ERC2O15083 957 aa8.78□□□□□ -1
SYNE1-208ENST00000367256 AXDND1Q5T1B0 1012 aaPredicted RBP8.78□□□□□ -1
SYNE1-208ENST00000367256 EXOC6Q8TAG9 804 aa8.78□□□□□ -1
SYNE1-208ENST00000367256 PLCD4Q9BRC7 762 aa8.78□□□□□ -1
SYNE1-208ENST00000367256 TSPYL1Q9H0U9 437 aa8.77□□□□□ -1
SYNE1-208ENST00000367256 SMC2O95347 1197 aa8.77□□□□□ -1
SYNE1-208ENST00000367256 C22orf23Q9BZE7 217 aa8.77□□□□□ -1.01
SYNE1-208ENST00000367256 PDCP20941 246 aa8.77□□□□□ -1.01
SYNE1-208ENST00000367256 SCAPERQ9BY12 1400 aa8.77□□□□□ -1.01
SYNE1-208ENST00000367256 DZIP1LQ8IYY4 767 aaKnown RBP8.77□□□□□ -1.01
SYNE1-208ENST00000367256 COG6Q9Y2V7 657 aa8.77□□□□□ -1.01
SYNE1-208ENST00000367256 HSP90AB4PQ58FF6 505 aa8.76□□□□□ -1.01
SYNE1-208ENST00000367256 G3BP1Q13283 466 aaKnown RBP eCLIP8.76□□□□□ -1.01
SYNE1-208ENST00000367256 HSP90AB3PQ58FF7 597 aa8.76□□□□□ -1.01
SYNE1-208ENST00000367256 PKNOX2Q96KN3 472 aa8.76□□□□□ -1.01
SYNE1-208ENST00000367256 EVC2Q86UK5 1308 aa8.76□□□□□ -1.01
SYNE1-208ENST00000367256 KIAA0754O94854 1291 aa8.76□□□□□ -1.01
SYNE1-208ENST00000367256 PDS5BQ9NTI5 1447 aa8.76□□□□□ -1.01
SYNE1-208ENST00000367256 RALYLQ86SE5 291 aaKnown RBP8.76□□□□□ -1.01
SYNE1-208ENST00000367256 R3HCC1Q9Y3T6 440 aaKnown RBP8.76□□□□□ -1.01
SYNE1-208ENST00000367256 ZSCAN21Q9Y5A6 473 aaPredicted RBP8.76□□□□□ -1.01
SYNE1-208ENST00000367256 PANK3Q9H999 370 aa8.76□□□□□ -1.01
SYNE1-208ENST00000367256 MSH5O43196 834 aa8.75□□□□□ -1.01
SYNE1-208ENST00000367256 TEFQ10587 303 aa8.75□□□□□ -1.01
SYNE1-208ENST00000367256 ENOX2Q16206 610 aaKnown RBP8.75□□□□□ -1.01
SYNE1-208ENST00000367256 SMARCE1Q969G3 411 aa8.75□□□□□ -1.01
SYNE1-208ENST00000367256 WASHC2CQ9Y4E1 1318 aa8.75□□□□□ -1.01
SYNE1-208ENST00000367256 TRIM5Q9C035 493 aa8.75□□□□□ -1.01
SYNE1-208ENST00000367256 PDIA4P13667 645 aaKnown RBP8.75□□□□□ -1.01
SYNE1-208ENST00000367256 ERLIN2O94905 339 aa8.75□□□□□ -1.01
SYNE1-208ENST00000367256 EIF2S2P20042 333 aaKnown RBP8.75□□□□□ -1.01
SYNE1-208ENST00000367256 SKIDA1Q1XH10 827 aa8.75□□□□□ -1.01
SYNE1-208ENST00000367256 GOLGA6L7A0A1B0GV03 622 aa8.75□□□□□ -1.01
SYNE1-208ENST00000367256 KIF21BO75037 1637 aa8.75□□□□□ -1.01
SYNE1-208ENST00000367256 XBP1P17861 261 aa8.75□□□□□ -1.01
SYNE1-208ENST00000367256 TSPY26PQ9H489 355 aa8.75□□□□□ -1.01
SYNE1-208ENST00000367256 MAGEC2Q9UBF1 373 aaPredicted RBP8.74□□□□□ -1.01
SYNE1-208ENST00000367256 ELL2O00472 640 aaPredicted RBP8.74□□□□□ -1.01
SYNE1-208ENST00000367256 KINO60870 393 aaKnown RBP8.74□□□□□ -1.01
SYNE1-208ENST00000367256 DDX58O95786 925 aaKnown RBP8.74□□□□□ -1.01
SYNE1-208ENST00000367256 CDC45O75419 566 aa8.74□□□□□ -1.01
SYNE1-208ENST00000367256 RABEP1Q15276 862 aa8.74□□□□□ -1.01
SYNE1-208ENST00000367256 CCDC7Q96M83 1385 aa8.74□□□□□ -1.01
SYNE1-208ENST00000367256 PSMA5P28066 241 aa8.74□□□□□ -1.01
SYNE1-208ENST00000367256 USP8P40818 1118 aa8.74□□□□□ -1.01
SYNE1-208ENST00000367256 INCENPQ9NQS7 918 aa8.74□□□□□ -1.01
SYNE1-208ENST00000367256 NECTIN2Q92692 538 aa8.74□□□□□ -1.01
SYNE1-208ENST00000367256 CDK5RAP3Q96JB5 506 aa8.74□□□□□ -1.01
SYNE1-208ENST00000367256 FHOD3Q2V2M9 1422 aa8.73□□□□□ -1.01
SYNE1-208ENST00000367256 CIZ1Q9ULV3 898 aaPredicted RBP8.73□□□□□ -1.01
SYNE1-208ENST00000367256 WASHC2AQ641Q2 1341 aa8.73□□□□□ -1.01
SYNE1-208ENST00000367256 ANKRD18AQ8IVF6 992 aa8.73□□□□□ -1.01
SYNE1-208ENST00000367256 PDCL2Q8N4E4 241 aa8.73□□□□□ -1.01
SYNE1-208ENST00000367256 SMARCA4P51532 1647 aa8.73□□□□□ -1.01
SYNE1-208ENST00000367256 SAMD1Q6SPF0 538 aaPredicted RBP8.73□□□□□ -1.01
SYNE1-208ENST00000367256 CT47B1P0C2W7 299 aaPredicted RBP8.73□□□□□ -1.01
SYNE1-208ENST00000367256 TMEM132AQ24JP5 1023 aa8.73□□□□□ -1.01
SYNE1-208ENST00000367256 ST20-MTHFSA0A0A6YYL1 179 aa8.73□□□□□ -1.01
SYNE1-208ENST00000367256 NUTM2FA1L443 756 aa8.73□□□□□ -1.01
SYNE1-208ENST00000367256 MYOM3Q5VTT5 1437 aa8.73□□□□□ -1.01
SYNE1-208ENST00000367256 EVA1CP58658 441 aa8.73□□□□□ -1.01
SYNE1-208ENST00000367256 KIF3BO15066 747 aa8.72□□□□□ -1.01
SYNE1-208ENST00000367256 FYB1O15117 783 aa8.72□□□□□ -1.01
SYNE1-208ENST00000367256 SDF4Q9BRK5 362 aa8.72□□□□□ -1.01
SYNE1-208ENST00000367256 SYCP1Q15431 976 aa8.72□□□□□ -1.01
SYNE1-208ENST00000367256 PIP4K2AP48426 406 aaPredicted RBP8.72□□□□□ -1.01
SYNE1-208ENST00000367256 FKBP5Q13451 457 aaPredicted RBP8.72□□□□□ -1.01
SYNE1-208ENST00000367256 RBM33Q96EV2 1170 aaKnown RBP8.72□□□□□ -1.01
SYNE1-208ENST00000367256 TXLNBQ8N3L3 684 aa8.72□□□□□ -1.01
SYNE1-208ENST00000367256 TRAK2O60296 914 aa8.72□□□□□ -1.01
SYNE1-208ENST00000367256 SART3Q15020 963 aaKnown RBP8.72□□□□□ -1.01
SYNE1-208ENST00000367256 SEPT7Q16181 437 aaKnown RBP8.72□□□□□ -1.01
SYNE1-208ENST00000367256 RUNDC1Q96C34 613 aa8.72□□□□□ -1.01
SYNE1-208ENST00000367256 IQCEQ6IPM2 695 aa8.72□□□□□ -1.01
SYNE1-208ENST00000367256 SYTL4Q96C24 671 aaPredicted RBP8.71□□□□□ -1.01
SYNE1-208ENST00000367256 TXLNAP40222 546 aa8.71□□□□□ -1.01
SYNE1-208ENST00000367256 TRAK1Q9UPV9 953 aa8.71□□□□□ -1.02
SYNE1-208ENST00000367256 EZRP15311 586 aaKnown RBP8.71□□□□□ -1.02
SYNE1-208ENST00000367256 CNTROBQ8N137 903 aa8.71□□□□□ -1.02
SYNE1-208ENST00000367256 PAF1Q8N7H5 531 aa8.71□□□□□ -1.02
SYNE1-208ENST00000367256 RNF214Q8ND24 703 aa8.71□□□□□ -1.02
SYNE1-208ENST00000367256 CCDC27Q2M243 656 aa8.7□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 61.7 ms