RNA–Protein interactions for RNA: ENST00000361373.8

LDB3-202, Transcript of LIM domain binding 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDB3, Length 5,297 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3-202ENST00000361373 ERC2O15083 957 aa16.53■□□□□ 0.24
LDB3-202ENST00000361373 AKAP17AQ02040 695 aaKnown RBP16.53■□□□□ 0.24
LDB3-202ENST00000361373 TCP11L2Q8N4U5 519 aa16.53■□□□□ 0.24
LDB3-202ENST00000361373 RASSF8Q8NHQ8 419 aa16.53■□□□□ 0.24
LDB3-202ENST00000361373 RNF20Q5VTR2 975 aa16.53■□□□□ 0.24
LDB3-202ENST00000361373 CCDC30Q5VVM6 783 aa16.53■□□□□ 0.24
LDB3-202ENST00000361373 RIC3Q7Z5B4 369 aa16.53■□□□□ 0.24
LDB3-202ENST00000361373 ADAMTS8Q9UP79 889 aa16.52■□□□□ 0.24
LDB3-202ENST00000361373 PPP6R1Q9UPN7 881 aa16.52■□□□□ 0.24
LDB3-202ENST00000361373 CDK13Q14004 1512 aaKnown RBP16.52■□□□□ 0.24
LDB3-202ENST00000361373 SF3A1Q15459 793 aaKnown RBP16.52■□□□□ 0.23
LDB3-202ENST00000361373 GNAI3P08754 354 aa16.51■□□□□ 0.23
LDB3-202ENST00000361373 PDE4AP27815 886 aa16.51■□□□□ 0.23
LDB3-202ENST00000361373 PNISRQ8TF01 805 aaKnown RBP16.51■□□□□ 0.23
LDB3-202ENST00000361373 NAP1L5Q96NT1 182 aaPredicted RBP16.51■□□□□ 0.23
LDB3-202ENST00000361373 NUTM2GQ5VZR2 741 aa16.51■□□□□ 0.23
LDB3-202ENST00000361373 VPS37DQ86XT2 251 aa16.51■□□□□ 0.23
LDB3-202ENST00000361373 FAM184AQ8NB25 1140 aa16.51■□□□□ 0.23
LDB3-202ENST00000361373 TATP17735 454 aaPredicted RBP16.5■□□□□ 0.23
LDB3-202ENST00000361373 NECTIN2Q92692 538 aa16.5■□□□□ 0.23
LDB3-202ENST00000361373 SLC12A5Q9H2X9 1139 aa16.5■□□□□ 0.23
LDB3-202ENST00000361373 NAIPQ13075 1403 aa16.49■□□□□ 0.23
LDB3-202ENST00000361373 H3BQV1 296 aa16.49■□□□□ 0.23
LDB3-202ENST00000361373 IFFO2Q5TF58 517 aa16.49■□□□□ 0.23
LDB3-202ENST00000361373 CABP1Q9NZU7 370 aa16.49■□□□□ 0.23
LDB3-202ENST00000361373 ARHGEF11O15085 1522 aa16.49■□□□□ 0.23
LDB3-202ENST00000361373 DDX11L8A8MPP1 907 aa16.49■□□□□ 0.23
LDB3-202ENST00000361373 PRKAR2BP31323 418 aa16.49■□□□□ 0.23
LDB3-202ENST00000361373 MARCH6O60337 910 aa16.49■□□□□ 0.23
LDB3-202ENST00000361373 CT47B1P0C2W7 299 aaPredicted RBP16.49■□□□□ 0.23
LDB3-202ENST00000361373 UBTFL1P0CB47 393 aaPredicted RBP16.49■□□□□ 0.23
LDB3-202ENST00000361373 TRDNQ13061 729 aa16.48■□□□□ 0.23
LDB3-202ENST00000361373 NBPF8Q3BBV2 869 aa16.48■□□□□ 0.23
LDB3-202ENST00000361373 NOL8Q76FK4 1167 aaKnown RBP16.48■□□□□ 0.23
LDB3-202ENST00000361373 KIF14Q15058 1648 aa16.48■□□□□ 0.23
LDB3-202ENST00000361373 DNAJC5BQ9UF47 199 aa16.47■□□□□ 0.23
LDB3-202ENST00000361373 ADGRL1O94910 1474 aa16.47■□□□□ 0.23
LDB3-202ENST00000361373 PLB1Q6P1J6 1458 aa16.47■□□□□ 0.23
LDB3-202ENST00000361373 HMGB2P26583 209 aaKnown RBP16.47■□□□□ 0.23
LDB3-202ENST00000361373 INTS3Q68E01 1043 aaKnown RBP16.47■□□□□ 0.23
LDB3-202ENST00000361373 TRIM34Q9BYJ4 488 aa16.47■□□□□ 0.23
LDB3-202ENST00000361373 URB2Q14146 1524 aaKnown RBP16.46■□□□□ 0.23
LDB3-202ENST00000361373 CCDC61Q9Y6R9 512 aa16.46■□□□□ 0.23
LDB3-202ENST00000361373 CAMSAP2Q08AD1 1489 aa16.45■□□□□ 0.22
LDB3-202ENST00000361373 GOLGA6L3A6NEY3 463 aa16.45■□□□□ 0.22
LDB3-202ENST00000361373 TSHZ2Q9NRE2 1034 aa16.45■□□□□ 0.22
LDB3-202ENST00000361373 SLC26A8Q96RN1 970 aa16.45■□□□□ 0.22
LDB3-202ENST00000361373 SKOR2Q2VWA4 1001 aaPredicted RBP16.44■□□□□ 0.22
LDB3-202ENST00000361373 RBM33Q96EV2 1170 aaKnown RBP16.44■□□□□ 0.22
LDB3-202ENST00000361373 SPG7Q9UQ90 795 aa16.44■□□□□ 0.22
LDB3-202ENST00000361373 USP35Q9P2H5 1018 aa16.44■□□□□ 0.22
LDB3-202ENST00000361373 GZF1Q9H116 711 aaPredicted RBP16.43■□□□□ 0.22
LDB3-202ENST00000361373 TRIM29Q14134 588 aa16.43■□□□□ 0.22
LDB3-202ENST00000361373 WDR63Q8IWG1 891 aa16.43■□□□□ 0.22
LDB3-202ENST00000361373 PCF11O94913 1555 aaKnown RBP16.43■□□□□ 0.22
LDB3-202ENST00000361373 APPP05067 770 aa16.43■□□□□ 0.22
LDB3-202ENST00000361373 PDE3AQ14432 1141 aa16.42■□□□□ 0.22
LDB3-202ENST00000361373 AIMP1Q12904 312 aaKnown RBP16.42■□□□□ 0.22
LDB3-202ENST00000361373 CPLX1O14810 134 aa16.42■□□□□ 0.22
LDB3-202ENST00000361373 TWISTNBQ3B726 338 aaPredicted RBP16.42■□□□□ 0.22
LDB3-202ENST00000361373 AKNAQ7Z591 1439 aa16.42■□□□□ 0.22
LDB3-202ENST00000361373 ABCC5O15440 1437 aa16.41■□□□□ 0.22
LDB3-202ENST00000361373 SULT6B1Q6IMI4 303 aa16.41■□□□□ 0.22
LDB3-202ENST00000361373 CLASRPQ8N2M8 674 aaKnown RBP16.41■□□□□ 0.22
LDB3-202ENST00000361373 ZNF428Q96B54 188 aa16.41■□□□□ 0.22
LDB3-202ENST00000361373 KCNH5Q8NCM2 988 aa16.41■□□□□ 0.22
LDB3-202ENST00000361373 KIF6Q6ZMV9 814 aa16.41■□□□□ 0.22
LDB3-202ENST00000361373 ANO2Q9NQ90 1003 aa16.41■□□□□ 0.22
LDB3-202ENST00000361373 DENND4BO75064 1496 aaPredicted RBP16.4■□□□□ 0.22
LDB3-202ENST00000361373 DEKP35659 375 aaKnown RBP16.4■□□□□ 0.22
LDB3-202ENST00000361373 FOXD4L1Q9NU39 408 aa16.4■□□□□ 0.22
LDB3-202ENST00000361373 ERICH2A1L162 156 aa16.4■□□□□ 0.22
LDB3-202ENST00000361373 NINLQ9Y2I6 1382 aa16.4■□□□□ 0.22
LDB3-202ENST00000361373 ERC1Q8IUD2 1116 aa16.39■□□□□ 0.22
LDB3-202ENST00000361373 FCHSD2O94868 740 aa16.39■□□□□ 0.21
LDB3-202ENST00000361373 VPS53Q5VIR6 699 aa16.39■□□□□ 0.21
LDB3-202ENST00000361373 ZNF530Q6P9A1 599 aaPredicted RBP16.39■□□□□ 0.21
LDB3-202ENST00000361373 EXOSC9Q06265 439 aaKnown RBP16.39■□□□□ 0.21
LDB3-202ENST00000361373 TOM1L2Q6ZVM7 507 aa16.39■□□□□ 0.21
LDB3-202ENST00000361373 NUDT16Q96DE0 195 aaKnown RBP16.39■□□□□ 0.21
LDB3-202ENST00000361373 PRDM11Q9NQV5 511 aa16.39■□□□□ 0.21
LDB3-202ENST00000361373 NEUROD6Q96NK8 337 aa16.38■□□□□ 0.21
LDB3-202ENST00000361373 LNPKQ9C0E8 428 aa16.38■□□□□ 0.21
LDB3-202ENST00000361373 CTDP1Q9Y5B0 961 aaPredicted RBP16.38■□□□□ 0.21
LDB3-202ENST00000361373 PTPN23Q9H3S7 1636 aa16.37■□□□□ 0.21
LDB3-202ENST00000361373 HDGFL1Q5TGJ6 251 aa16.37■□□□□ 0.21
LDB3-202ENST00000361373 STRN4Q9NRL3 753 aa16.37■□□□□ 0.21
LDB3-202ENST00000361373 CCT4P50991 539 aaKnown RBP16.37■□□□□ 0.21
LDB3-202ENST00000361373 PANK1Q8TE04 598 aa16.37■□□□□ 0.21
LDB3-202ENST00000361373 CDC45O75419 566 aa16.37■□□□□ 0.21
LDB3-202ENST00000361373 NCOA1Q15788 1441 aa16.37■□□□□ 0.21
LDB3-202ENST00000361373 HIP1O00291 1037 aa16.36■□□□□ 0.21
LDB3-202ENST00000361373 CABP4P57796 275 aa16.36■□□□□ 0.21
LDB3-202ENST00000361373 BIVM-ERCC5R4GMW8 1640 aa16.36■□□□□ 0.21
LDB3-202ENST00000361373 RALYLQ86SE5 291 aaKnown RBP16.36■□□□□ 0.21
LDB3-202ENST00000361373 GCC1Q96CN9 775 aa16.36■□□□□ 0.21
LDB3-202ENST00000361373 ANO8Q9HCE9 1232 aaPredicted RBP16.36■□□□□ 0.21
LDB3-202ENST00000361373 CNTROBQ8N137 903 aa16.35■□□□□ 0.21
LDB3-202ENST00000361373 GNAI2P04899 355 aa16.35■□□□□ 0.21
LDB3-202ENST00000361373 CCDC47Q96A33 483 aaKnown RBP16.35■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms