RNA–Protein interactions for RNA: ENST00000326956.11

SSBP3-201, Transcript of single stranded DNA binding protein 3, humanhuman

TSL 2

Gene SSBP3, Length 2,913 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP3-201ENST00000326956 ARXQ96QS3 562 aa18.57■□□□□ 0.56
SSBP3-201ENST00000326956 SPRYD3Q8NCJ5 442 aa18.56■□□□□ 0.56
SSBP3-201ENST00000326956 TBC1D2Q9BYX2 928 aa18.56■□□□□ 0.56
SSBP3-201ENST00000326956 KIAA1210Q9ULL0 1709 aa18.56■□□□□ 0.56
SSBP3-201ENST00000326956 TRAK1Q9UPV9 953 aa18.56■□□□□ 0.56
SSBP3-201ENST00000326956 TNNQ9UQP3 1299 aa18.56■□□□□ 0.56
SSBP3-201ENST00000326956 SHROOM2Q13796 1616 aa18.55■□□□□ 0.56
SSBP3-201ENST00000326956 SLC12A5Q9H2X9 1139 aa18.55■□□□□ 0.56
SSBP3-201ENST00000326956 TET3O43151 1660 aa18.55■□□□□ 0.56
SSBP3-201ENST00000326956 MTHFSP49914 203 aa18.55■□□□□ 0.56
SSBP3-201ENST00000326956 ZMYM3Q14202 1370 aa18.54■□□□□ 0.56
SSBP3-201ENST00000326956 ZKSCAN2Q63HK3 967 aa18.54■□□□□ 0.56
SSBP3-201ENST00000326956 ANTXR1Q9H6X2 564 aa18.53■□□□□ 0.56
SSBP3-201ENST00000326956 U2AF1L5P0DN76 240 aaPredicted RBP18.53■□□□□ 0.56
SSBP3-201ENST00000326956 U2AF1Q01081 240 aaKnown RBP eCLIP18.53■□□□□ 0.56
SSBP3-201ENST00000326956 MAP3K4Q9Y6R4 1608 aa18.53■□□□□ 0.56
SSBP3-201ENST00000326956 MYOM2P54296 1465 aa18.52■□□□□ 0.56
SSBP3-201ENST00000326956 MVPQ14764 893 aaKnown RBP18.52■□□□□ 0.56
SSBP3-201ENST00000326956 ZFYVE16Q7Z3T8 1539 aa18.52■□□□□ 0.56
SSBP3-201ENST00000326956 SBNO2Q9Y2G9 1366 aa18.52■□□□□ 0.56
SSBP3-201ENST00000326956 NLRP1Q9C000 1473 aa18.52■□□□□ 0.55
SSBP3-201ENST00000326956 GOLGA6L3A6NEY3 463 aa18.51■□□□□ 0.55
SSBP3-201ENST00000326956 MFAP1P55081 439 aaKnown RBP18.51■□□□□ 0.55
SSBP3-201ENST00000326956 DZIP1LQ8IYY4 767 aaKnown RBP18.51■□□□□ 0.55
SSBP3-201ENST00000326956 CCDC27Q2M243 656 aa18.51■□□□□ 0.55
SSBP3-201ENST00000326956 ABCA6Q8N139 1617 aa18.5■□□□□ 0.55
SSBP3-201ENST00000326956 ERCC6L2Q5T890 1561 aa18.5■□□□□ 0.55
SSBP3-201ENST00000326956 C22orf23Q9BZE7 217 aa18.5■□□□□ 0.55
SSBP3-201ENST00000326956 PHF23Q9BUL5 403 aaPredicted RBP18.49■□□□□ 0.55
SSBP3-201ENST00000326956 GZF1Q9H116 711 aaPredicted RBP18.49■□□□□ 0.55
SSBP3-201ENST00000326956 SMC4Q9NTJ3 1288 aa18.49■□□□□ 0.55
SSBP3-201ENST00000326956 UGGT1Q9NYU2 1555 aa18.48■□□□□ 0.55
SSBP3-201ENST00000326956 ZCCHC11Q5TAX3 1644 aaKnown RBP18.48■□□□□ 0.55
SSBP3-201ENST00000326956 MCM4P33991 863 aa18.48■□□□□ 0.55
SSBP3-201ENST00000326956 CHMP5Q9NZZ3 219 aa18.48■□□□□ 0.55
SSBP3-201ENST00000326956 DEPDC5O75140 1603 aa18.47■□□□□ 0.55
SSBP3-201ENST00000326956 ITPRIPQ8IWB1 547 aa18.46■□□□□ 0.55
SSBP3-201ENST00000326956 HSCBQ8IWL3 235 aa18.46■□□□□ 0.55
SSBP3-201ENST00000326956 ATP7AQ04656 1500 aa18.46■□□□□ 0.55
SSBP3-201ENST00000326956 KIF1BO60333 1816 aa18.46■□□□□ 0.55
SSBP3-201ENST00000326956 NOS1P29475 1434 aa18.46■□□□□ 0.55
SSBP3-201ENST00000326956 CT47B1P0C2W7 299 aaPredicted RBP18.45■□□□□ 0.54
SSBP3-201ENST00000326956 NEURL4Q96JN8 1562 aa18.45■□□□□ 0.54
SSBP3-201ENST00000326956 TMEM132EQ6IEE7 984 aa18.45■□□□□ 0.54
SSBP3-201ENST00000326956 DDX19BQ9UMR2 479 aa18.45■□□□□ 0.54
SSBP3-201ENST00000326956 IQSEC2Q5JU85 1478 aa18.44■□□□□ 0.54
SSBP3-201ENST00000326956 U2SURPO15042 1029 aaKnown RBP18.44■□□□□ 0.54
SSBP3-201ENST00000326956 TSR2Q969E8 191 aaKnown RBP18.44■□□□□ 0.54
SSBP3-201ENST00000326956 ZNF518AQ6AHZ1 1483 aa18.43■□□□□ 0.54
SSBP3-201ENST00000326956 SHPRHQ149N8 1683 aa18.43■□□□□ 0.54
SSBP3-201ENST00000326956 FANCAO15360 1455 aa18.42■□□□□ 0.54
SSBP3-201ENST00000326956 EXOSC9Q06265 439 aaKnown RBP18.42■□□□□ 0.54
SSBP3-201ENST00000326956 TRAK2O60296 914 aa18.42■□□□□ 0.54
SSBP3-201ENST00000326956 NCBP3Q53F19 620 aaKnown RBP18.42■□□□□ 0.54
SSBP3-201ENST00000326956 C14orf93Q9H972 538 aaKnown RBP18.42■□□□□ 0.54
SSBP3-201ENST00000326956 VWDEQ8N2E2 1590 aa18.42■□□□□ 0.54
SSBP3-201ENST00000326956 EVC2Q86UK5 1308 aa18.41■□□□□ 0.54
SSBP3-201ENST00000326956 XRCC6P12956 609 aaKnown RBP eCLIP18.41■□□□□ 0.54
SSBP3-201ENST00000326956 RRAGDQ9NQL2 400 aaPredicted RBP18.41■□□□□ 0.54
SSBP3-201ENST00000326956 ARAP3Q8WWN8 1544 aa18.41■□□□□ 0.54
SSBP3-201ENST00000326956 UHRF1BP1LA0JNW5 1464 aa18.41■□□□□ 0.54
SSBP3-201ENST00000326956 TRIM27P14373 513 aa18.4■□□□□ 0.54
SSBP3-201ENST00000326956 HDAC1Q13547 482 aaPredicted RBP18.4■□□□□ 0.54
SSBP3-201ENST00000326956 MYO3AQ8NEV4 1616 aa18.39■□□□□ 0.54
SSBP3-201ENST00000326956 DDX11L8A8MPP1 907 aa18.39■□□□□ 0.53
SSBP3-201ENST00000326956 ATF7IPQ6VMQ6 1270 aa18.39■□□□□ 0.53
SSBP3-201ENST00000326956 ADGRL1O94910 1474 aa18.39■□□□□ 0.53
SSBP3-201ENST00000326956 SSH1Q8WYL5 1049 aa18.38■□□□□ 0.53
SSBP3-201ENST00000326956 IPO8O15397 1037 aaKnown RBP18.38■□□□□ 0.53
SSBP3-201ENST00000326956 NSD2O96028 1365 aa18.37■□□□□ 0.53
SSBP3-201ENST00000326956 NRXN1Q9ULB1 1477 aa18.37■□□□□ 0.53
SSBP3-201ENST00000326956 MRE11P49959 708 aa18.36■□□□□ 0.53
SSBP3-201ENST00000326956 PNNQ9H307 717 aaKnown RBP18.36■□□□□ 0.53
SSBP3-201ENST00000326956 NOB1Q9ULX3 412 aaKnown RBP18.36■□□□□ 0.53
SSBP3-201ENST00000326956 EFCAB6Q5THR3 1501 aa18.36■□□□□ 0.53
SSBP3-201ENST00000326956 INO80Q9ULG1 1556 aaPredicted RBP18.36■□□□□ 0.53
SSBP3-201ENST00000326956 SETBP1Q9Y6X0 1596 aa18.36■□□□□ 0.53
SSBP3-201ENST00000326956 FSD2A1L4K1 749 aa18.36■□□□□ 0.53
SSBP3-201ENST00000326956 TMPOP42166 694 aaKnown RBP18.36■□□□□ 0.53
SSBP3-201ENST00000326956 UBE2Q2Q8WVN8 375 aa18.36■□□□□ 0.53
SSBP3-201ENST00000326956 HSP90AA1P07900 732 aaKnown RBP18.35■□□□□ 0.53
SSBP3-201ENST00000326956 GGT6Q6P531 493 aa18.35■□□□□ 0.53
SSBP3-201ENST00000326956 ANKRD36BQ8N2N9 1353 aa18.35■□□□□ 0.53
SSBP3-201ENST00000326956 HSP90AB1P08238 724 aaKnown RBP18.35■□□□□ 0.53
SSBP3-201ENST00000326956 SAFB2Q14151 953 aaKnown RBP eCLIP18.35■□□□□ 0.53
SSBP3-201ENST00000326956 NAP1L5Q96NT1 182 aaPredicted RBP18.35■□□□□ 0.53
SSBP3-201ENST00000326956 CABP2Q9NPB3 220 aa18.35■□□□□ 0.53
SSBP3-201ENST00000326956 SMC5Q8IY18 1101 aa18.34■□□□□ 0.53
SSBP3-201ENST00000326956 PANK2Q9BZ23 570 aa18.34■□□□□ 0.53
SSBP3-201ENST00000326956 QRICH2Q9H0J4 1663 aa18.34■□□□□ 0.53
SSBP3-201ENST00000326956 KIF16BQ96L93 1317 aa18.34■□□□□ 0.53
SSBP3-201ENST00000326956 TMEM57Q8N5G2 664 aa18.34■□□□□ 0.53
SSBP3-201ENST00000326956 MROH2AA6NES4 1674 aa18.34■□□□□ 0.53
SSBP3-201ENST00000326956 RPGRIP1LQ68CZ1 1315 aa18.33■□□□□ 0.53
SSBP3-201ENST00000326956 PUS7Q96PZ0 661 aaKnown RBP18.33■□□□□ 0.52
SSBP3-201ENST00000326956 IFT172Q9UG01 1749 aa18.33■□□□□ 0.52
SSBP3-201ENST00000326956 NUTM2DQ5VT03 806 aaPredicted RBP18.33■□□□□ 0.52
SSBP3-201ENST00000326956 LNPKQ9C0E8 428 aa18.33■□□□□ 0.52
SSBP3-201ENST00000326956 RIPK4P57078 832 aa18.32■□□□□ 0.52
SSBP3-201ENST00000326956 SRPK2P78362 688 aaKnown RBP18.32■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms