RNA–Protein interactions for RNA: ENST00000297405.9

CSMD3-201, Transcript of CUB and Sushi multiple domains 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSMD3, Length 13,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-201ENST00000297405 H3BQV1 296 aa5.77□□□□□ -1.48
CSMD3-201ENST00000297405 RSPH4AQ5TD94 716 aa5.77□□□□□ -1.48
CSMD3-201ENST00000297405 IFFO2Q5TF58 517 aa5.77□□□□□ -1.48
CSMD3-201ENST00000297405 CCDC146Q8IYE0 955 aa5.77□□□□□ -1.48
CSMD3-201ENST00000297405 GTF2A1P52655 376 aaPredicted RBP5.77□□□□□ -1.49
CSMD3-201ENST00000297405 TMF1P82094 1093 aa5.77□□□□□ -1.49
CSMD3-201ENST00000297405 NLRP13Q86W25 1043 aa5.77□□□□□ -1.49
CSMD3-201ENST00000297405 KIF18AQ8NI77 898 aa5.77□□□□□ -1.49
CSMD3-201ENST00000297405 ZNF318Q5VUA4 2279 aa5.77□□□□□ -1.49
CSMD3-201ENST00000297405 DIDO1Q9BTC0 2240 aaKnown RBP5.77□□□□□ -1.49
CSMD3-201ENST00000297405 TDO2P48775 406 aa5.77□□□□□ -1.49
CSMD3-201ENST00000297405 OLFM4Q6UX06 510 aa5.77□□□□□ -1.49
CSMD3-201ENST00000297405 SLTMQ9NWH9 1034 aaKnown RBP eCLIP5.77□□□□□ -1.49
CSMD3-201ENST00000297405 CCDC83Q8IWF9 413 aa5.77□□□□□ -1.49
CSMD3-201ENST00000297405 CCDC192P0DO97 292 aa5.77□□□□□ -1.49
CSMD3-201ENST00000297405 SPECC1LQ69YQ0 1117 aa5.77□□□□□ -1.49
CSMD3-201ENST00000297405 JMYQ8N9B5 988 aa5.77□□□□□ -1.49
CSMD3-201ENST00000297405 PDE4AP27815 886 aa5.77□□□□□ -1.49
CSMD3-201ENST00000297405 GIGYF2Q6Y7W6 1299 aaKnown RBP5.77□□□□□ -1.49
CSMD3-201ENST00000297405 PLCD4Q9BRC7 762 aa5.77□□□□□ -1.49
CSMD3-201ENST00000297405 TACO1Q9BSH4 297 aaKnown RBP5.77□□□□□ -1.49
CSMD3-201ENST00000297405 MYH2Q9UKX2 1941 aa5.77□□□□□ -1.49
CSMD3-201ENST00000297405 MYH13Q9UKX3 1938 aa5.77□□□□□ -1.49
CSMD3-201ENST00000297405 ENOX2Q16206 610 aaKnown RBP5.77□□□□□ -1.49
CSMD3-201ENST00000297405 FILIP1Q7Z7B0 1213 aa5.77□□□□□ -1.49
CSMD3-201ENST00000297405 ARHGAP35Q9NRY4 1499 aa5.77□□□□□ -1.49
CSMD3-201ENST00000297405 ANKS4BQ8N8V4 417 aa5.76□□□□□ -1.49
CSMD3-201ENST00000297405 CRACR2AQ9BSW2 395 aa5.76□□□□□ -1.49
CSMD3-201ENST00000297405 PLEKHH1Q9ULM0 1364 aa5.76□□□□□ -1.49
CSMD3-201ENST00000297405 VIRMAQ69YN4 1812 aaKnown RBP5.76□□□□□ -1.49
CSMD3-201ENST00000297405 TRIM6-TRIM34B2RNG4 842 aa5.76□□□□□ -1.49
CSMD3-201ENST00000297405 TRIM34Q9BYJ4 488 aa5.76□□□□□ -1.49
CSMD3-201ENST00000297405 CCDC73Q6ZRK6 1079 aa5.76□□□□□ -1.49
CSMD3-201ENST00000297405 FMNL3Q8IVF7 1028 aa5.76□□□□□ -1.49
CSMD3-201ENST00000297405 MYH14Q7Z406 1995 aaKnown RBP5.76□□□□□ -1.49
CSMD3-201ENST00000297405 ZNHIT6Q9NWK9 470 aaKnown RBP5.76□□□□□ -1.49
CSMD3-201ENST00000297405 BAZ1BQ9UIG0 1483 aaKnown RBP5.76□□□□□ -1.49
CSMD3-201ENST00000297405 TMCO3Q6UWJ1 677 aa5.76□□□□□ -1.49
CSMD3-201ENST00000297405 ZNF622Q969S3 477 aaKnown RBP eCLIP5.76□□□□□ -1.49
CSMD3-201ENST00000297405 DACH1Q9UI36 760 aa5.76□□□□□ -1.49
CSMD3-201ENST00000297405 FAM184BQ9ULE4 1060 aa5.76□□□□□ -1.49
CSMD3-201ENST00000297405 MYH7BA7E2Y1 1941 aa5.76□□□□□ -1.49
CSMD3-201ENST00000297405 CBFA2T2O43439 604 aa5.76□□□□□ -1.49
CSMD3-201ENST00000297405 STAMBPO95630 424 aa5.76□□□□□ -1.49
CSMD3-201ENST00000297405 SEPT7Q16181 437 aaKnown RBP5.76□□□□□ -1.49
CSMD3-201ENST00000297405 SETD5Q9C0A6 1442 aa5.76□□□□□ -1.49
CSMD3-201ENST00000297405 IMMTQ16891 758 aaKnown RBP5.75□□□□□ -1.49
CSMD3-201ENST00000297405 DHX29Q7Z478 1369 aaKnown RBP5.75□□□□□ -1.49
CSMD3-201ENST00000297405 SPAG9O60271 1321 aaKnown RBP5.75□□□□□ -1.49
CSMD3-201ENST00000297405 KINO60870 393 aaKnown RBP5.75□□□□□ -1.49
CSMD3-201ENST00000297405 MYH1P12882 1939 aa5.75□□□□□ -1.49
CSMD3-201ENST00000297405 MYH4Q9Y623 1939 aa5.75□□□□□ -1.49
CSMD3-201ENST00000297405 ZBTB7CA1YPR0 619 aa5.75□□□□□ -1.49
CSMD3-201ENST00000297405 ZNF592Q92610 1267 aa5.75□□□□□ -1.49
CSMD3-201ENST00000297405 ANKRD18BA2A2Z9 1011 aa5.75□□□□□ -1.49
CSMD3-201ENST00000297405 CT47A1Q5JQC4 288 aaPredicted RBP5.75□□□□□ -1.49
CSMD3-201ENST00000297405 FILIP1LQ4L180 1135 aa5.75□□□□□ -1.49
CSMD3-201ENST00000297405 DAAM2Q86T65 1068 aa5.75□□□□□ -1.49
CSMD3-201ENST00000297405 FAM114A2Q9NRY5 505 aa5.75□□□□□ -1.49
CSMD3-201ENST00000297405 SEPT11Q9NVA2 429 aaKnown RBP5.75□□□□□ -1.49
CSMD3-201ENST00000297405 ZSCAN12O43309 604 aa5.75□□□□□ -1.49
CSMD3-201ENST00000297405 ZFYP08048 801 aaPredicted RBP5.75□□□□□ -1.49
CSMD3-201ENST00000297405 SMAP1Q8IYB5 467 aaPredicted RBP5.75□□□□□ -1.49
CSMD3-201ENST00000297405 ZMAT2Q96NC0 199 aaKnown RBP5.75□□□□□ -1.49
CSMD3-201ENST00000297405 CCDC175P0C221 793 aa5.74□□□□□ -1.49
CSMD3-201ENST00000297405 MFAP1P55081 439 aaKnown RBP5.74□□□□□ -1.49
CSMD3-201ENST00000297405 NFKBIBQ15653 356 aa5.74□□□□□ -1.49
CSMD3-201ENST00000297405 MNAT1P51948 309 aa5.74□□□□□ -1.49
CSMD3-201ENST00000297405 C6orf163Q5TEZ5 329 aa5.74□□□□□ -1.49
CSMD3-201ENST00000297405 UBXN4Q92575 508 aa5.74□□□□□ -1.49
CSMD3-201ENST00000297405 CHD4Q14839 1912 aa5.74□□□□□ -1.49
CSMD3-201ENST00000297405 UQCRHLA0A096LP55 91 aa5.74□□□□□ -1.49
CSMD3-201ENST00000297405 UQCRHP07919 91 aa5.74□□□□□ -1.49
CSMD3-201ENST00000297405 SRRTQ9BXP5 876 aaKnown RBP5.74□□□□□ -1.49
CSMD3-201ENST00000297405 C10orf67Q8IYJ2 551 aa5.74□□□□□ -1.49
CSMD3-201ENST00000297405 KRT222Q8N1A0 295 aa5.74□□□□□ -1.49
CSMD3-201ENST00000297405 RASSF8Q8NHQ8 419 aa5.74□□□□□ -1.49
CSMD3-201ENST00000297405 BBXQ8WY36 941 aaPredicted RBP5.74□□□□□ -1.49
CSMD3-201ENST00000297405 ATRXP46100 2492 aa5.74□□□□□ -1.49
CSMD3-201ENST00000297405 ODF2Q5BJF6 829 aa5.74□□□□□ -1.49
CSMD3-201ENST00000297405 FRAT1Q92837 279 aaPredicted RBP5.74□□□□□ -1.49
CSMD3-201ENST00000297405 SALL2Q9Y467 1007 aaPredicted RBP5.74□□□□□ -1.49
CSMD3-201ENST00000297405 DHX16O60231 1041 aaKnown RBP5.74□□□□□ -1.49
CSMD3-201ENST00000297405 RSRC1Q96IZ7 334 aaKnown RBP5.74□□□□□ -1.49
CSMD3-201ENST00000297405 STAG3Q9UJ98 1225 aa5.74□□□□□ -1.49
CSMD3-201ENST00000297405 RBM33Q96EV2 1170 aaKnown RBP5.74□□□□□ -1.49
CSMD3-201ENST00000297405 FMNL2Q96PY5 1086 aa5.74□□□□□ -1.49
CSMD3-201ENST00000297405 RBM26Q5T8P6 1007 aaKnown RBP5.74□□□□□ -1.49
CSMD3-201ENST00000297405 ZMYND15Q9H091 742 aa5.74□□□□□ -1.49
CSMD3-201ENST00000297405 R3HCC1Q9Y3T6 440 aaKnown RBP5.74□□□□□ -1.49
CSMD3-201ENST00000297405 AIMP1Q12904 312 aaKnown RBP5.74□□□□□ -1.49
CSMD3-201ENST00000297405 CCDC7Q96M83 1385 aa5.73□□□□□ -1.49
CSMD3-201ENST00000297405 BMS1Q14692 1282 aaKnown RBP5.73□□□□□ -1.49
CSMD3-201ENST00000297405 VPS8Q8N3P4 1428 aa5.73□□□□□ -1.49
CSMD3-201ENST00000297405 GOLIM4O00461 696 aa5.73□□□□□ -1.49
CSMD3-201ENST00000297405 VGFO15240 615 aaPredicted RBP5.73□□□□□ -1.49
CSMD3-201ENST00000297405 DZIP1LQ8IYY4 767 aaKnown RBP5.73□□□□□ -1.49
CSMD3-201ENST00000297405 TTC3P53804 2025 aa5.73□□□□□ -1.49
CSMD3-201ENST00000297405 PPFIA3O75145 1194 aa5.73□□□□□ -1.49
CSMD3-201ENST00000297405 CCDC6Q16204 474 aa5.73□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms