RNA–Protein interactions for RNA: ENST00000293441.5

SHANK1-201, Transcript of SH3 and multiple ankyrin repeat domains 1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene SHANK1, Length 6,643 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1-201ENST00000293441 HSP90AB4PQ58FF6 505 aa21.05■□□□□ 0.96
SHANK1-201ENST00000293441 ERC2O15083 957 aa21.04■□□□□ 0.96
SHANK1-201ENST00000293441 KIF7Q2M1P5 1343 aa21.04■□□□□ 0.96
SHANK1-201ENST00000293441 LNPKQ9C0E8 428 aa21.04■□□□□ 0.96
SHANK1-201ENST00000293441 UBTFL1P0CB47 393 aaPredicted RBP21.04■□□□□ 0.96
SHANK1-201ENST00000293441 CCDC47Q96A33 483 aaKnown RBP21.04■□□□□ 0.96
SHANK1-201ENST00000293441 NCOA2Q15596 1464 aa21.03■□□□□ 0.96
SHANK1-201ENST00000293441 RBM42Q9BTD8 480 aaKnown RBP21.03■□□□□ 0.96
SHANK1-201ENST00000293441 LRRC9Q6ZRR7 1453 aa21.03■□□□□ 0.96
SHANK1-201ENST00000293441 STAC3Q96MF2 364 aa21.03■□□□□ 0.96
SHANK1-201ENST00000293441 RRBP1Q9P2E9 1410 aaKnown RBP21.03■□□□□ 0.96
SHANK1-201ENST00000293441 CFAP70Q5T0N1 1121 aa21.03■□□□□ 0.96
SHANK1-201ENST00000293441 CCAR2Q8N163 923 aaKnown RBP21.03■□□□□ 0.96
SHANK1-201ENST00000293441 GRIN2BQ13224 1484 aa21.02■□□□□ 0.96
SHANK1-201ENST00000293441 CCDC7Q96M83 1385 aa21.02■□□□□ 0.96
SHANK1-201ENST00000293441 PRG4Q92954 1404 aaPredicted RBP21.02■□□□□ 0.96
SHANK1-201ENST00000293441 SYNJ2O15056 1496 aa21.02■□□□□ 0.96
SHANK1-201ENST00000293441 MTHFSP49914 203 aa21.02■□□□□ 0.96
SHANK1-201ENST00000293441 INTS3Q68E01 1043 aaKnown RBP21.02■□□□□ 0.96
SHANK1-201ENST00000293441 FYCO1Q9BQS8 1478 aa21.02■□□□□ 0.96
SHANK1-201ENST00000293441 CCDC43Q96MW1 224 aaKnown RBP21.01■□□□□ 0.95
SHANK1-201ENST00000293441 MTMR7Q9Y216 660 aa21.01■□□□□ 0.95
SHANK1-201ENST00000293441 BICD2Q8TD16 824 aa21.01■□□□□ 0.95
SHANK1-201ENST00000293441 PRAM1Q96QH2 718 aa21.01■□□□□ 0.95
SHANK1-201ENST00000293441 VPS37CA5D8V6 355 aaPredicted RBP21■□□□□ 0.95
SHANK1-201ENST00000293441 KIF6Q6ZMV9 814 aa21■□□□□ 0.95
SHANK1-201ENST00000293441 PANK1Q8TE04 598 aa21■□□□□ 0.95
SHANK1-201ENST00000293441 SKOR2Q2VWA4 1001 aaPredicted RBP20.99■□□□□ 0.95
SHANK1-201ENST00000293441 RALYLQ86SE5 291 aaKnown RBP20.99■□□□□ 0.95
SHANK1-201ENST00000293441 KIF21BO75037 1637 aa20.98■□□□□ 0.95
SHANK1-201ENST00000293441 NUTM2BA6NNL0 878 aaPredicted RBP20.98■□□□□ 0.95
SHANK1-201ENST00000293441 NUTM2EB1AL46 878 aaPredicted RBP20.98■□□□□ 0.95
SHANK1-201ENST00000293441 NUTM2AQ8IVF1 878 aaPredicted RBP20.98■□□□□ 0.95
SHANK1-201ENST00000293441 SMC3Q9UQE7 1217 aa20.98■□□□□ 0.95
SHANK1-201ENST00000293441 SMG6Q86US8 1419 aaKnown RBP20.97■□□□□ 0.95
SHANK1-201ENST00000293441 PLEKHO1Q53GL0 409 aaPredicted RBP20.97■□□□□ 0.95
SHANK1-201ENST00000293441 KDM4AO75164 1064 aa20.97■□□□□ 0.95
SHANK1-201ENST00000293441 HOOK1Q9UJC3 728 aaKnown RBP20.97■□□□□ 0.95
SHANK1-201ENST00000293441 CASKIN1Q8WXD9 1431 aa20.96■□□□□ 0.95
SHANK1-201ENST00000293441 CCDC30Q5VVM6 783 aa20.96■□□□□ 0.95
SHANK1-201ENST00000293441 GAS2L2Q8NHY3 880 aa20.96■□□□□ 0.95
SHANK1-201ENST00000293441 CNKSR2Q8WXI2 1034 aa20.95■□□□□ 0.94
SHANK1-201ENST00000293441 ANKRD20A12PQ8NF67 263 aa20.95■□□□□ 0.94
SHANK1-201ENST00000293441 SAFBQ15424 915 aaKnown RBP eCLIP20.95■□□□□ 0.94
SHANK1-201ENST00000293441 PPP1R1BQ9UD71 204 aaPredicted RBP20.94■□□□□ 0.94
SHANK1-201ENST00000293441 ADAMTS8Q9UP79 889 aa20.94■□□□□ 0.94
SHANK1-201ENST00000293441 CNTLNQ9NXG0 1405 aa20.94■□□□□ 0.94
SHANK1-201ENST00000293441 PRKAR2BP31323 418 aa20.93■□□□□ 0.94
SHANK1-201ENST00000293441 IKQ13123 557 aaPredicted RBP20.93■□□□□ 0.94
SHANK1-201ENST00000293441 NINLQ9Y2I6 1382 aa20.93■□□□□ 0.94
SHANK1-201ENST00000293441 TATP17735 454 aaPredicted RBP20.92■□□□□ 0.94
SHANK1-201ENST00000293441 DNAJC2Q99543 621 aaKnown RBP20.92■□□□□ 0.94
SHANK1-201ENST00000293441 ZNF592Q92610 1267 aa20.92■□□□□ 0.94
SHANK1-201ENST00000293441 FSD1Q9BTV5 496 aa20.92■□□□□ 0.94
SHANK1-201ENST00000293441 CDK19Q9BWU1 502 aa20.92■□□□□ 0.94
SHANK1-201ENST00000293441 THEMISQ8N1K5 641 aaPredicted RBP20.92■□□□□ 0.94
SHANK1-201ENST00000293441 ZNF428Q96B54 188 aa20.92■□□□□ 0.94
SHANK1-201ENST00000293441 CNTROBQ8N137 903 aa20.91■□□□□ 0.94
SHANK1-201ENST00000293441 DDX54Q8TDD1 881 aaKnown RBP20.91■□□□□ 0.94
SHANK1-201ENST00000293441 IPO7O95373 1038 aaKnown RBP20.9■□□□□ 0.94
SHANK1-201ENST00000293441 TOM1L2Q6ZVM7 507 aa20.9■□□□□ 0.94
SHANK1-201ENST00000293441 TCP11L2Q8N4U5 519 aa20.9■□□□□ 0.94
SHANK1-201ENST00000293441 TBC1D2BQ9UPU7 963 aa20.9■□□□□ 0.94
SHANK1-201ENST00000293441 WASHC2AQ641Q2 1341 aa20.89■□□□□ 0.94
SHANK1-201ENST00000293441 SURF6O75683 361 aaKnown RBP20.89■□□□□ 0.94
SHANK1-201ENST00000293441 DCAF8L1A6NGE4 600 aa20.89■□□□□ 0.93
SHANK1-201ENST00000293441 CCDC70Q6NSX1 233 aa20.89■□□□□ 0.93
SHANK1-201ENST00000293441 CABP4P57796 275 aa20.89■□□□□ 0.93
SHANK1-201ENST00000293441 SCAPERQ9BY12 1400 aa20.88■□□□□ 0.93
SHANK1-201ENST00000293441 NESP48681 1621 aa20.88■□□□□ 0.93
SHANK1-201ENST00000293441 NCAPD3P42695 1498 aa20.88■□□□□ 0.93
SHANK1-201ENST00000293441 MRC2Q9UBG0 1479 aa20.88■□□□□ 0.93
SHANK1-201ENST00000293441 BRMS1Q9HCU9 246 aa20.88■□□□□ 0.93
SHANK1-201ENST00000293441 CFTRP13569 1480 aa20.88■□□□□ 0.93
SHANK1-201ENST00000293441 CLASRPQ8N2M8 674 aaKnown RBP20.88■□□□□ 0.93
SHANK1-201ENST00000293441 CNNM1Q9NRU3 951 aa20.87■□□□□ 0.93
SHANK1-201ENST00000293441 SASS6Q6UVJ0 657 aa20.87■□□□□ 0.93
SHANK1-201ENST00000293441 SF3B2Q13435 895 aaKnown RBP20.87■□□□□ 0.93
SHANK1-201ENST00000293441 PIP4K2BP78356 416 aa20.87■□□□□ 0.93
SHANK1-201ENST00000293441 PPP2R1AP30153 589 aa20.86■□□□□ 0.93
SHANK1-201ENST00000293441 C22orf23Q9BZE7 217 aa20.86■□□□□ 0.93
SHANK1-201ENST00000293441 GNAI3P08754 354 aa20.86■□□□□ 0.93
SHANK1-201ENST00000293441 CDC45O75419 566 aa20.86■□□□□ 0.93
SHANK1-201ENST00000293441 NBPF1Q3BBV0 1214 aa20.86■□□□□ 0.93
SHANK1-201ENST00000293441 CABP1Q9NZU7 370 aa20.86■□□□□ 0.93
SHANK1-201ENST00000293441 C9orf84Q5VXU9 1444 aa20.85■□□□□ 0.93
SHANK1-201ENST00000293441 SULT6B1Q6IMI4 303 aa20.85■□□□□ 0.93
SHANK1-201ENST00000293441 C1orf115Q9H7X2 142 aa20.85■□□□□ 0.93
SHANK1-201ENST00000293441 CHMP5Q9NZZ3 219 aa20.85■□□□□ 0.93
SHANK1-201ENST00000293441 TNNT3P45378 269 aaPredicted RBP20.85■□□□□ 0.93
SHANK1-201ENST00000293441 EXOSC9Q06265 439 aaKnown RBP20.85■□□□□ 0.93
SHANK1-201ENST00000293441 TWISTNBQ3B726 338 aaPredicted RBP20.85■□□□□ 0.93
SHANK1-201ENST00000293441 TTC39AQ5SRH9 613 aa20.85■□□□□ 0.93
SHANK1-201ENST00000293441 CCDC73Q6ZRK6 1079 aa20.84■□□□□ 0.93
SHANK1-201ENST00000293441 XBP1P17861 261 aa20.84■□□□□ 0.93
SHANK1-201ENST00000293441 SLC12A5Q9H2X9 1139 aa20.84■□□□□ 0.93
SHANK1-201ENST00000293441 PSMA5P28066 241 aa20.83■□□□□ 0.93
SHANK1-201ENST00000293441 BRD4O60885 1362 aaPredicted RBP20.83■□□□□ 0.93
SHANK1-201ENST00000293441 RRP12Q5JTH9 1297 aaKnown RBP20.83■□□□□ 0.93
SHANK1-201ENST00000293441 SLC26A8Q96RN1 970 aa20.83■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms