RNA–Protein interactions for RNA: ENST00000233146.6

MSH2-201, Transcript of mutS homolog 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSH2, Length 3,307 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH2-201ENST00000233146 COG6Q9Y2V7 657 aa16.1■□□□□ 0.17
MSH2-201ENST00000233146 CCDC66A2RUB6 948 aa16.1■□□□□ 0.17
MSH2-201ENST00000233146 FAM177BA6PVY3 158 aa16.1■□□□□ 0.17
MSH2-201ENST00000233146 CAVIN1Q6NZI2 390 aaKnown RBP16.09■□□□□ 0.17
MSH2-201ENST00000233146 TIGD1Q96MW7 591 aa16.09■□□□□ 0.17
MSH2-201ENST00000233146 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP16.09■□□□□ 0.17
MSH2-201ENST00000233146 DHX37Q8IY37 1157 aaKnown RBP16.09■□□□□ 0.17
MSH2-201ENST00000233146 EHBP1L1Q8N3D4 1523 aa16.08■□□□□ 0.17
MSH2-201ENST00000233146 PANK1Q8TE04 598 aa16.08■□□□□ 0.17
MSH2-201ENST00000233146 PCDHB15Q9Y5E8 787 aa16.08■□□□□ 0.17
MSH2-201ENST00000233146 CAPN2P17655 700 aa16.08■□□□□ 0.16
MSH2-201ENST00000233146 MMP14P50281 582 aa16.08■□□□□ 0.16
MSH2-201ENST00000233146 CERS3Q8IU89 383 aa16.08■□□□□ 0.16
MSH2-201ENST00000233146 PIBF1Q8WXW3 757 aa16.08■□□□□ 0.16
MSH2-201ENST00000233146 ANKRD30AQ9BXX3 1397 aa16.08■□□□□ 0.16
MSH2-201ENST00000233146 ATAD2BQ9ULI0 1458 aa16.07■□□□□ 0.16
MSH2-201ENST00000233146 CC2D1BQ5T0F9 858 aaKnown RBP16.07■□□□□ 0.16
MSH2-201ENST00000233146 SPINK5Q9NQ38 1064 aaPredicted RBP16.07■□□□□ 0.16
MSH2-201ENST00000233146 NOLC1Q14978 699 aaKnown RBP eCLIP16.06■□□□□ 0.16
MSH2-201ENST00000233146 LMBRD1Q9NUN5 540 aa16.05■□□□□ 0.16
MSH2-201ENST00000233146 FKBP5Q13451 457 aaPredicted RBP16.04■□□□□ 0.16
MSH2-201ENST00000233146 LRSAM1Q6UWE0 723 aa16.04■□□□□ 0.16
MSH2-201ENST00000233146 ROCK1Q13464 1354 aa16.03■□□□□ 0.16
MSH2-201ENST00000233146 RWDD1Q9H446 243 aaPredicted RBP16.03■□□□□ 0.16
MSH2-201ENST00000233146 SPTLC3Q9NUV7 552 aa16.03■□□□□ 0.16
MSH2-201ENST00000233146 PZPP20742 1482 aa16.02■□□□□ 0.16
MSH2-201ENST00000233146 ZBTB7CA1YPR0 619 aa16.02■□□□□ 0.16
MSH2-201ENST00000233146 TRIM6-TRIM34B2RNG4 842 aa16.02■□□□□ 0.16
MSH2-201ENST00000233146 PTMAP06454 111 aaKnown RBP16.02■□□□□ 0.16
MSH2-201ENST00000233146 TRIM34Q9BYJ4 488 aa16.02■□□□□ 0.16
MSH2-201ENST00000233146 TSPYL1Q9H0U9 437 aa16.02■□□□□ 0.16
MSH2-201ENST00000233146 CTIFO43310 598 aaKnown RBP16.02■□□□□ 0.15
MSH2-201ENST00000233146 YY1AP1Q9H869 796 aa16.02■□□□□ 0.15
MSH2-201ENST00000233146 FOXD4L1Q9NU39 408 aa16.02■□□□□ 0.15
MSH2-201ENST00000233146 TERF2Q15554 542 aa16.01■□□□□ 0.15
MSH2-201ENST00000233146 MCTP1Q6DN14 999 aa16.01■□□□□ 0.15
MSH2-201ENST00000233146 SHROOM2Q13796 1616 aa16.01■□□□□ 0.15
MSH2-201ENST00000233146 K7ELQ4 463 aaPredicted RBP16.01■□□□□ 0.15
MSH2-201ENST00000233146 WDR43Q15061 677 aaKnown RBP eCLIP16.01■□□□□ 0.15
MSH2-201ENST00000233146 AEBP1Q8IUX7 1158 aa16.01■□□□□ 0.15
MSH2-201ENST00000233146 CALCOCO1Q9P1Z2 691 aa16.01■□□□□ 0.15
MSH2-201ENST00000233146 PRDM2Q13029 1718 aa16.01■□□□□ 0.15
MSH2-201ENST00000233146 NPC1L1Q9UHC9 1359 aa16■□□□□ 0.15
MSH2-201ENST00000233146 KIF2CQ99661 725 aa16■□□□□ 0.15
MSH2-201ENST00000233146 CD2BP2O95400 341 aaKnown RBP16■□□□□ 0.15
MSH2-201ENST00000233146 PLXNC1O60486 1568 aa16■□□□□ 0.15
MSH2-201ENST00000233146 CTNNA3Q9UI47 895 aa15.99■□□□□ 0.15
MSH2-201ENST00000233146 CAMSAP2Q08AD1 1489 aa15.99■□□□□ 0.15
MSH2-201ENST00000233146 GAS2L2Q8NHY3 880 aa15.99■□□□□ 0.15
MSH2-201ENST00000233146 GRIN2BQ13224 1484 aa15.98■□□□□ 0.15
MSH2-201ENST00000233146 PSEN1P49768 467 aa15.98■□□□□ 0.15
MSH2-201ENST00000233146 GEMIN8Q9NWZ8 242 aaKnown RBP15.98■□□□□ 0.15
MSH2-201ENST00000233146 AK9Q5TCS8 1911 aa15.98■□□□□ 0.15
MSH2-201ENST00000233146 GPT2Q8TD30 523 aa15.98■□□□□ 0.15
MSH2-201ENST00000233146 RBM27Q9P2N5 1060 aaKnown RBP15.98■□□□□ 0.15
MSH2-201ENST00000233146 DDX41Q9UJV9 622 aaKnown RBP15.98■□□□□ 0.15
MSH2-201ENST00000233146 SOX12O15370 315 aa15.97■□□□□ 0.15
MSH2-201ENST00000233146 ARHGEF12Q9NZN5 1544 aa15.97■□□□□ 0.15
MSH2-201ENST00000233146 RIOK3O14730 519 aaKnown RBP15.97■□□□□ 0.15
MSH2-201ENST00000233146 DIAPH3Q9NSV4 1193 aa15.97■□□□□ 0.15
MSH2-201ENST00000233146 MORC2Q9Y6X9 1032 aaPredicted RBP15.97■□□□□ 0.15
MSH2-201ENST00000233146 MAGI3Q5TCQ9 1506 aa15.96■□□□□ 0.15
MSH2-201ENST00000233146 FAM135AQ9P2D6 1515 aa15.96■□□□□ 0.14
MSH2-201ENST00000233146 CYP2E1P05181 493 aaPredicted RBP15.96■□□□□ 0.14
MSH2-201ENST00000233146 SLC52A1Q9NWF4 448 aa15.96■□□□□ 0.14
MSH2-201ENST00000233146 SYCE3A1L190 88 aa15.95■□□□□ 0.14
MSH2-201ENST00000233146 TMEM63CQ9P1W3 806 aa15.95■□□□□ 0.14
MSH2-201ENST00000233146 EFCC1Q9HA90 598 aa15.95■□□□□ 0.14
MSH2-201ENST00000233146 HDAC5Q9UQL6 1122 aa15.95■□□□□ 0.14
MSH2-201ENST00000233146 C17orf53Q8N3J3 647 aaPredicted RBP15.94■□□□□ 0.14
MSH2-201ENST00000233146 FEZ2Q9UHY8 353 aaPredicted RBP15.94■□□□□ 0.14
MSH2-201ENST00000233146 RLBP1P12271 317 aa15.94■□□□□ 0.14
MSH2-201ENST00000233146 SYCP1Q15431 976 aa15.94■□□□□ 0.14
MSH2-201ENST00000233146 CLGNO14967 610 aa15.93■□□□□ 0.14
MSH2-201ENST00000233146 NUCB2P80303 420 aa15.93■□□□□ 0.14
MSH2-201ENST00000233146 NGEFQ8N5V2 710 aa15.93■□□□□ 0.14
MSH2-201ENST00000233146 RNF214Q8ND24 703 aa15.93■□□□□ 0.14
MSH2-201ENST00000233146 PPP2R1AP30153 589 aa15.93■□□□□ 0.14
MSH2-201ENST00000233146 ZBTB9Q96C00 473 aa15.93■□□□□ 0.14
MSH2-201ENST00000233146 FAM193AP78312 1265 aa15.93■□□□□ 0.14
MSH2-201ENST00000233146 NCBP1Q09161 790 aaKnown RBP15.93■□□□□ 0.14
MSH2-201ENST00000233146 BCCIPQ9P287 314 aaKnown RBP eCLIP15.93■□□□□ 0.14
MSH2-201ENST00000233146 DMRT2Q9Y5R5 561 aa15.92■□□□□ 0.14
MSH2-201ENST00000233146 COL17A1Q9UMD9 1497 aaPredicted RBP15.92■□□□□ 0.14
MSH2-201ENST00000233146 KIF16BQ96L93 1317 aa15.92■□□□□ 0.14
MSH2-201ENST00000233146 PRPF40AO75400 957 aaKnown RBP15.92■□□□□ 0.14
MSH2-201ENST00000233146 DAPK1P53355 1430 aa15.91■□□□□ 0.14
MSH2-201ENST00000233146 CHAF1AQ13111 956 aaPredicted RBP15.91■□□□□ 0.14
MSH2-201ENST00000233146 CHMP4CQ96CF2 233 aa15.91■□□□□ 0.14
MSH2-201ENST00000233146 TTC12Q9H892 705 aaPredicted RBP15.91■□□□□ 0.14
MSH2-201ENST00000233146 ABCC2Q92887 1545 aa15.9■□□□□ 0.14
MSH2-201ENST00000233146 APAF1O14727 1248 aa15.9■□□□□ 0.14
MSH2-201ENST00000233146 TNNQ9UQP3 1299 aa15.89■□□□□ 0.13
MSH2-201ENST00000233146 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP15.89■□□□□ 0.13
MSH2-201ENST00000233146 CCDC146Q8IYE0 955 aa15.89■□□□□ 0.13
MSH2-201ENST00000233146 SAMD9Q5K651 1589 aa15.89■□□□□ 0.13
MSH2-201ENST00000233146 KIF18AQ8NI77 898 aa15.88■□□□□ 0.13
MSH2-201ENST00000233146 RBM42Q9BTD8 480 aaKnown RBP15.88■□□□□ 0.13
MSH2-201ENST00000233146 TSPY26PQ9H489 355 aa15.88■□□□□ 0.13
MSH2-201ENST00000233146 KCNG1Q9UIX4 513 aa15.88■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms