RNA–Protein interactions for RNA: ENSMUST00000108531.7

Nup88-203, Transcript of Nuclear pore complex protein Nup88, mousemouse

TSL 1 (best) BASIC

Gene Nup88, Length 2,453 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Nup88-203ENSMUST00000108531 Sipa1l1Q8C0T5 1782 aa16.71■□□□□ 0.27
Nup88-203ENSMUST00000108531 Mre11Q61216 706 aa16.71■□□□□ 0.27
Nup88-203ENSMUST00000108531 Topbp1Q6ZQF0 1515 aa16.71■□□□□ 0.27
Nup88-203ENSMUST00000108531 KdrP35918 1367 aa16.71■□□□□ 0.27
Nup88-203ENSMUST00000108531 Map4k4P97820 1233 aaKnown RBP16.7■□□□□ 0.26
Nup88-203ENSMUST00000108531 Tspyl2Q7TQI8 677 aa16.7■□□□□ 0.26
Nup88-203ENSMUST00000108531 Puf60Q3UEB3 564 aaKnown RBP16.69■□□□□ 0.26
Nup88-203ENSMUST00000108531 Iqsec2Q5DU25 1478 aa16.68■□□□□ 0.26
Nup88-203ENSMUST00000108531 Znf521Q6KAS7 1311 aa16.68■□□□□ 0.26
Nup88-203ENSMUST00000108531 Gas2l2Q5SSG4 860 aa16.67■□□□□ 0.26
Nup88-203ENSMUST00000108531 Depdc5P61460 1591 aa16.67■□□□□ 0.26
Nup88-203ENSMUST00000108531 IbtkQ6ZPR6 1352 aaKnown RBP16.67■□□□□ 0.26
Nup88-203ENSMUST00000108531 4933416C03RikQ3V063 378 aa16.67■□□□□ 0.26
Nup88-203ENSMUST00000108531 Ipo8Q7TMY7 1010 aa16.67■□□□□ 0.26
Nup88-203ENSMUST00000108531 Tmc1Q8R4P5 757 aa16.67■□□□□ 0.26
Nup88-203ENSMUST00000108531 Cnga1P29974 684 aa16.66■□□□□ 0.26
Nup88-203ENSMUST00000108531 Irx3P81067 507 aa16.66■□□□□ 0.26
Nup88-203ENSMUST00000108531 Trim30dE9PWL0 497 aa16.65■□□□□ 0.26
Nup88-203ENSMUST00000108531 Prdm10Q3UTQ7 1184 aa16.65■□□□□ 0.26
Nup88-203ENSMUST00000108531 Trim58Q5NCC9 485 aa16.65■□□□□ 0.26
Nup88-203ENSMUST00000108531 Pank1Q8K4K6 548 aa16.65■□□□□ 0.26
Nup88-203ENSMUST00000108531 Scaf11E9PZM7 1456 aaKnown RBP16.65■□□□□ 0.26
Nup88-203ENSMUST00000108531 Ythdc2B2RR83 1445 aaKnown RBP16.65■□□□□ 0.26
Nup88-203ENSMUST00000108531 Ak7Q9D2H2 614 aa16.64■□□□□ 0.26
Nup88-203ENSMUST00000108531 MaddQ80U28 1577 aa16.64■□□□□ 0.25
Nup88-203ENSMUST00000108531 Skint5A7XUY5 1461 aa16.64■□□□□ 0.25
Nup88-203ENSMUST00000108531 Eif2ak4Q9QZ05 1648 aa16.64■□□□□ 0.25
Nup88-203ENSMUST00000108531 Prdm2A2A7B5 1709 aaKnown RBP16.64■□□□□ 0.25
Nup88-203ENSMUST00000108531 AampJ3QN89 436 aa16.64■□□□□ 0.25
Nup88-203ENSMUST00000108531 InsrP15208 1372 aa16.64■□□□□ 0.25
Nup88-203ENSMUST00000108531 Hfm1D3Z4R1 1434 aa16.63■□□□□ 0.25
Nup88-203ENSMUST00000108531 Tecpr2Q3UH45 1423 aa16.63■□□□□ 0.25
Nup88-203ENSMUST00000108531 Fam135bQ9DAI6 1403 aa16.63■□□□□ 0.25
Nup88-203ENSMUST00000108531 GsdmaQ9EST1 446 aa16.63■□□□□ 0.25
Nup88-203ENSMUST00000108531 PalldQ9ET54 1408 aa16.63■□□□□ 0.25
Nup88-203ENSMUST00000108531 Adgrl3Q80TS3 1537 aa16.63■□□□□ 0.25
Nup88-203ENSMUST00000108531 Ccdc183A2AJB1 534 aa16.62■□□□□ 0.25
Nup88-203ENSMUST00000108531 Akap12Q9WTQ5 1684 aa16.62■□□□□ 0.25
Nup88-203ENSMUST00000108531 Gtf3c3Q3TMP1 882 aa16.62■□□□□ 0.25
Nup88-203ENSMUST00000108531 Hsp90ab1P11499 724 aaKnown RBP16.61■□□□□ 0.25
Nup88-203ENSMUST00000108531 Eif2s2Q99L45 331 aaKnown RBP16.61■□□□□ 0.25
Nup88-203ENSMUST00000108531 Ino80Q6ZPV2 1559 aa16.61■□□□□ 0.25
Nup88-203ENSMUST00000108531 Plxnc1Q9QZC2 1574 aa16.61■□□□□ 0.25
Nup88-203ENSMUST00000108531 Lrrc7Q80TE7 1490 aa16.61■□□□□ 0.25
Nup88-203ENSMUST00000108531 P2rx7Q9Z1M0 595 aa16.61■□□□□ 0.25
Nup88-203ENSMUST00000108531 OvosQ3UU35 1456 aa16.6■□□□□ 0.25
Nup88-203ENSMUST00000108531 Gli2Q0VGT2 1544 aa16.6■□□□□ 0.25
Nup88-203ENSMUST00000108531 4930567H17RikQ3V0K5 233 aa16.6■□□□□ 0.25
Nup88-203ENSMUST00000108531 Adgrl1Q80TR1 1466 aa16.6■□□□□ 0.25
Nup88-203ENSMUST00000108531 Ift172Q6VH22 1749 aa16.59■□□□□ 0.25
Nup88-203ENSMUST00000108531 Arid3cA6PWV5 409 aa16.59■□□□□ 0.25
Nup88-203ENSMUST00000108531 Cald1E9QA15 768 aaKnown RBP16.59■□□□□ 0.25
Nup88-203ENSMUST00000108531 Stag3O70576 1240 aa16.59■□□□□ 0.25
Nup88-203ENSMUST00000108531 Atxn3Q9CVD2 355 aa16.59■□□□□ 0.25
Nup88-203ENSMUST00000108531 PtprtQ99M80 1454 aa16.59■□□□□ 0.25
Nup88-203ENSMUST00000108531 Duxf3A0A0N4SV92 674 aa16.59■□□□□ 0.25
Nup88-203ENSMUST00000108531 Rlbp1Q9Z275 317 aa16.58■□□□□ 0.25
Nup88-203ENSMUST00000108531 Ppp1r9bQ6R891 817 aaKnown RBP16.57■□□□□ 0.24
Nup88-203ENSMUST00000108531 Ttc37F8VPK0 1563 aa16.56■□□□□ 0.24
Nup88-203ENSMUST00000108531 Atp10aO54827 1508 aa16.56■□□□□ 0.24
Nup88-203ENSMUST00000108531 AU022751B1B0V2 589 aa16.56■□□□□ 0.24
Nup88-203ENSMUST00000108531 CenpjQ569L8 1344 aa16.55■□□□□ 0.24
Nup88-203ENSMUST00000108531 IqubQ8CDK3 788 aa16.55■□□□□ 0.24
Nup88-203ENSMUST00000108531 Cdc42bpgQ80UW5 1551 aa16.54■□□□□ 0.24
Nup88-203ENSMUST00000108531 Med14A2ABV5 1459 aaKnown RBP16.54■□□□□ 0.24
Nup88-203ENSMUST00000108531 Ncbp3Q8BZR9 615 aaKnown RBP16.54■□□□□ 0.24
Nup88-203ENSMUST00000108531 Polr3glQ8R0C0 218 aa16.54■□□□□ 0.24
Nup88-203ENSMUST00000108531 Pdlim2Q8R1G6 349 aa16.54■□□□□ 0.24
Nup88-203ENSMUST00000108531 Hecw2Q6I6G8 1578 aa16.54■□□□□ 0.24
Nup88-203ENSMUST00000108531 Ppp2r3aB2RXC8 1150 aa16.53■□□□□ 0.24
Nup88-203ENSMUST00000108531 Slc52a2Q9D8F3 450 aa16.53■□□□□ 0.24
Nup88-203ENSMUST00000108531 Ksr2Q3UVC0 959 aa16.52■□□□□ 0.24
Nup88-203ENSMUST00000108531 Nrxn1Q9CS84 1514 aa16.52■□□□□ 0.23
Nup88-203ENSMUST00000108531 Ccar1Q8CH18 1146 aaKnown RBP16.52■□□□□ 0.23
Nup88-203ENSMUST00000108531 U2af1Q9D883 239 aaKnown RBP16.52■□□□□ 0.23
Nup88-203ENSMUST00000108531 Mroh1E0CZ22 1640 aa16.52■□□□□ 0.23
Nup88-203ENSMUST00000108531 Kiaa0556Q8C753 1610 aa16.51■□□□□ 0.23
Nup88-203ENSMUST00000108531 Tsen2Q6P7W5 460 aa16.51■□□□□ 0.23
Nup88-203ENSMUST00000108531 Apaf1O88879 1249 aa16.5■□□□□ 0.23
Nup88-203ENSMUST00000108531 Armcx1Q9CX83 456 aa16.5■□□□□ 0.23
Nup88-203ENSMUST00000108531 Cfap65Q3V0B4 1847 aa16.49■□□□□ 0.23
Nup88-203ENSMUST00000108531 AglF8VPN4 1532 aa16.49■□□□□ 0.23
Nup88-203ENSMUST00000108531 Ptch1Q61115 1434 aa16.49■□□□□ 0.23
Nup88-203ENSMUST00000108531 Atl3Q91YH5 541 aa16.48■□□□□ 0.23
Nup88-203ENSMUST00000108531 KarsQ99MN1 595 aaKnown RBP16.48■□□□□ 0.23
Nup88-203ENSMUST00000108531 Trim26Q99PN3 545 aa16.47■□□□□ 0.23
Nup88-203ENSMUST00000108531 Htatsf1Q8BGC0 757 aa16.46■□□□□ 0.23
Nup88-203ENSMUST00000108531 Sptbn5F6UCX4 1208 aa16.45■□□□□ 0.22
Nup88-203ENSMUST00000108531 Exosc9Q9JHI7 438 aaKnown RBP16.45■□□□□ 0.22
Nup88-203ENSMUST00000108531 Knl1Q66JQ7 1612 aa16.45■□□□□ 0.22
Nup88-203ENSMUST00000108531 AdgbG3UZ78 1657 aa16.45■□□□□ 0.22
Nup88-203ENSMUST00000108531 Gm6268A2A3U9 297 aa16.44■□□□□ 0.22
Nup88-203ENSMUST00000108531 Dusp27Q148W8 1138 aa16.44■□□□□ 0.22
Nup88-203ENSMUST00000108531 Tbc1d32Q3URV1 1296 aa16.44■□□□□ 0.22
Nup88-203ENSMUST00000108531 Dip2cE9PWR4 1557 aa16.43■□□□□ 0.22
Nup88-203ENSMUST00000108531 Rabep1O35551 862 aa16.43■□□□□ 0.22
Nup88-203ENSMUST00000108531 Arhgap23Q69ZH9 1483 aa16.43■□□□□ 0.22
Nup88-203ENSMUST00000108531 RereQ80TZ9 1558 aa16.43■□□□□ 0.22
Nup88-203ENSMUST00000108531 Adamts7Q68SA9 1657 aa16.42■□□□□ 0.22
Nup88-203ENSMUST00000108531 Phlpp2Q8BXA7 1320 aa16.42■□□□□ 0.22
Retrieved 100 of 22,080 RNA–protein pairs in 11.9 ms