RNA–Protein interactions for RNA: ENST00000637050.1

CLN3-254, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-254ENST00000637050 SLC9A7Q96T83 725 aa19.31■□□□□ 0.68
CLN3-254ENST00000637050 HERC2P3Q9BVR0 1158 aa19.31■□□□□ 0.68
CLN3-254ENST00000637050 USP3Q9Y6I4 520 aa19.31■□□□□ 0.68
CLN3-254ENST00000637050 KIAA1671Q9BY89 1806 aa19.3■□□□□ 0.68
CLN3-254ENST00000637050 TNFRSF10BO14763 440 aa19.3■□□□□ 0.68
CLN3-254ENST00000637050 SART1O43290 800 aaKnown RBP19.3■□□□□ 0.68
CLN3-254ENST00000637050 RNF8O76064 485 aa19.3■□□□□ 0.68
CLN3-254ENST00000637050 CPB1P15086 417 aa19.3■□□□□ 0.68
CLN3-254ENST00000637050 SDC4P31431 198 aa19.3■□□□□ 0.68
CLN3-254ENST00000637050 PCK1P35558 622 aa19.3■□□□□ 0.68
CLN3-254ENST00000637050 PPM1AP35813 382 aa19.3■□□□□ 0.68
CLN3-254ENST00000637050 GRIK1P39086 918 aa19.3■□□□□ 0.68
CLN3-254ENST00000637050 SSR1P43307 286 aaKnown RBP19.3■□□□□ 0.68
CLN3-254ENST00000637050 TUBB4BP68371 445 aa19.3■□□□□ 0.68
CLN3-254ENST00000637050 DSG1Q02413 1049 aa19.3■□□□□ 0.68
CLN3-254ENST00000637050 SLC25A11Q02978 314 aaKnown RBP19.3■□□□□ 0.68
CLN3-254ENST00000637050 PSMD5Q16401 504 aa19.3■□□□□ 0.68
CLN3-254ENST00000637050 PM20D1Q6GTS8 502 aa19.3■□□□□ 0.68
CLN3-254ENST00000637050 HERC6Q8IVU3 1022 aa19.3■□□□□ 0.68
CLN3-254ENST00000637050 FIBCD1Q8N539 461 aa19.3■□□□□ 0.68
CLN3-254ENST00000637050 C8orf48Q96LL4 319 aa19.3■□□□□ 0.68
CLN3-254ENST00000637050 ZBED2Q9BTP6 218 aa19.3■□□□□ 0.68
CLN3-254ENST00000637050 C11orf84Q9BUA3 381 aaPredicted RBP19.3■□□□□ 0.68
CLN3-254ENST00000637050 DDX23Q9BUQ8 820 aaKnown RBP19.3■□□□□ 0.68
CLN3-254ENST00000637050 AAASQ9NRG9 546 aa19.3■□□□□ 0.68
CLN3-254ENST00000637050 SLC4A7Q9Y6M7 1214 aa19.3■□□□□ 0.68
CLN3-254ENST00000637050 MTMR11A4FU01 709 aa19.3■□□□□ 0.68
CLN3-254ENST00000637050 DAB1O75553 588 aa19.3■□□□□ 0.68
CLN3-254ENST00000637050 ZBED1O96006 694 aa19.3■□□□□ 0.68
CLN3-254ENST00000637050 ARPP19P56211 112 aa19.3■□□□□ 0.68
CLN3-254ENST00000637050 YWHAZP63104 245 aaKnown RBP19.3■□□□□ 0.68
CLN3-254ENST00000637050 CLUL1Q15846 466 aa19.3■□□□□ 0.68
CLN3-254ENST00000637050 C15orf59Q2T9L4 293 aaPredicted RBP19.3■□□□□ 0.68
CLN3-254ENST00000637050 SEL1L2Q5TEA6 688 aa19.3■□□□□ 0.68
CLN3-254ENST00000637050 KIAA1841Q6NSI8 718 aa19.3■□□□□ 0.68
CLN3-254ENST00000637050 AADACL2Q6P093 401 aa19.3■□□□□ 0.68
CLN3-254ENST00000637050 BHLHA9Q7RTU4 235 aa19.3■□□□□ 0.68
CLN3-254ENST00000637050 ATAD1Q8NBU5 361 aa19.3■□□□□ 0.68
CLN3-254ENST00000637050 FBXO22Q8NEZ5 403 aa19.3■□□□□ 0.68
CLN3-254ENST00000637050 SPPL2BQ8TCT7 592 aa19.3■□□□□ 0.68
CLN3-254ENST00000637050 SP7Q8TDD2 431 aaPredicted RBP19.3■□□□□ 0.68
CLN3-254ENST00000637050 C2orf15Q8WU43 125 aaKnown RBP19.3■□□□□ 0.68
CLN3-254ENST00000637050 IRGQQ8WZA9 623 aa19.3■□□□□ 0.68
CLN3-254ENST00000637050 CLP1Q92989 425 aaKnown RBP19.3■□□□□ 0.68
CLN3-254ENST00000637050 PGLYRP2Q96PD5 576 aa19.3■□□□□ 0.68
CLN3-254ENST00000637050 PLVAPQ9BX97 442 aa19.3■□□□□ 0.68
CLN3-254ENST00000637050 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP19.3■□□□□ 0.68
CLN3-254ENST00000637050 CDY1Q9Y6F8 540 aa19.3■□□□□ 0.68
CLN3-254ENST00000637050 TRIM66O15016 1216 aa19.29■□□□□ 0.68
CLN3-254ENST00000637050 VNN2O95498 520 aa19.29■□□□□ 0.68
CLN3-254ENST00000637050 FGGP02679 453 aa19.29■□□□□ 0.68
CLN3-254ENST00000637050 USP17L7P0C7H9 530 aa19.29■□□□□ 0.68
CLN3-254ENST00000637050 MIPP30301 263 aa19.29■□□□□ 0.68
CLN3-254ENST00000637050 MATKP42679 507 aa19.29■□□□□ 0.68
CLN3-254ENST00000637050 GLUD2P49448 558 aa19.29■□□□□ 0.68
CLN3-254ENST00000637050 C2orf54Q08AI8 447 aa19.29■□□□□ 0.68
CLN3-254ENST00000637050 NAA30Q147X3 362 aaPredicted RBP19.29■□□□□ 0.68
CLN3-254ENST00000637050 HADHQ16836 314 aaKnown RBP19.29■□□□□ 0.68
CLN3-254ENST00000637050 SH3PXD2AQ5TCZ1 1133 aa19.29■□□□□ 0.68
CLN3-254ENST00000637050 TXNRD3NBQ6F5E7 133 aa19.29■□□□□ 0.68
CLN3-254ENST00000637050 RNF19BQ6ZMZ0 732 aa19.29■□□□□ 0.68
CLN3-254ENST00000637050 NOA1Q8NC60 698 aaKnown RBP19.29■□□□□ 0.68
CLN3-254ENST00000637050 EXD1Q8NHP7 514 aa19.29■□□□□ 0.68
CLN3-254ENST00000637050 UBXN4Q92575 508 aa19.29■□□□□ 0.68
CLN3-254ENST00000637050 CENPIQ92674 756 aaPredicted RBP19.29■□□□□ 0.68
CLN3-254ENST00000637050 FAM149B1Q96BN6 582 aa19.29■□□□□ 0.68
CLN3-254ENST00000637050 SLC2A13Q96QE2 648 aa19.29■□□□□ 0.68
CLN3-254ENST00000637050 NAP1L3Q99457 506 aaPredicted RBP19.29■□□□□ 0.68
CLN3-254ENST00000637050 RAD9AQ99638 391 aa19.29■□□□□ 0.68
CLN3-254ENST00000637050 NCAPGQ9BPX3 1015 aa19.29■□□□□ 0.68
CLN3-254ENST00000637050 LBHD1Q9BQE6 289 aaPredicted RBP19.29■□□□□ 0.68
CLN3-254ENST00000637050 NOL12Q9UGY1 213 aaKnown RBP eCLIP19.29■□□□□ 0.68
CLN3-254ENST00000637050 PCDHB12Q9Y5F1 795 aa19.29■□□□□ 0.68
CLN3-254ENST00000637050 V9GYY5 206 aaPredicted RBP19.29■□□□□ 0.68
CLN3-254ENST00000637050 YJEFN3A6XGL0 299 aa19.28■□□□□ 0.68
CLN3-254ENST00000637050 E7ENQ6 273 aa19.28■□□□□ 0.68
CLN3-254ENST00000637050 ADAM12O43184 909 aa19.28■□□□□ 0.68
CLN3-254ENST00000637050 DESP17661 470 aa19.28■□□□□ 0.68
CLN3-254ENST00000637050 IL1R2P27930 398 aa19.28■□□□□ 0.68
CLN3-254ENST00000637050 ATP11AP98196 1134 aa19.28■□□□□ 0.68
CLN3-254ENST00000637050 ERCC6LQ2NKX8 1250 aa19.28■□□□□ 0.68
CLN3-254ENST00000637050 ATP13A4Q4VNC1 1196 aa19.28■□□□□ 0.68
CLN3-254ENST00000637050 TEX35Q5T0J7 233 aa19.28■□□□□ 0.68
CLN3-254ENST00000637050 RASIP1Q5U651 963 aa19.28■□□□□ 0.68
CLN3-254ENST00000637050 HFE2Q6ZVN8 426 aa19.28■□□□□ 0.68
CLN3-254ENST00000637050 SCN4BQ8IWT1 228 aa19.28■□□□□ 0.68
CLN3-254ENST00000637050 DEFB106AQ8N104 65 aa19.28■□□□□ 0.68
CLN3-254ENST00000637050 MTIF3Q9H2K0 278 aaKnown RBP19.28■□□□□ 0.68
CLN3-254ENST00000637050 POPDC2Q9HBU9 364 aa19.28■□□□□ 0.68
CLN3-254ENST00000637050 RBM12Q9NTZ6 932 aaKnown RBP19.28■□□□□ 0.68
CLN3-254ENST00000637050 DDX56Q9NY93 547 aaKnown RBP19.28■□□□□ 0.68
CLN3-254ENST00000637050 ZRANB2O95218 330 aaKnown RBP eCLIP19.27■□□□□ 0.68
CLN3-254ENST00000637050 TRUB2O95900 331 aaKnown RBP19.27■□□□□ 0.68
CLN3-254ENST00000637050 FYNP06241 537 aa19.27■□□□□ 0.68
CLN3-254ENST00000637050 KRT7P08729 469 aa19.27■□□□□ 0.68
CLN3-254ENST00000637050 ATP2A2P16615 1042 aaKnown RBP19.27■□□□□ 0.68
CLN3-254ENST00000637050 NOS2P35228 1153 aa19.27■□□□□ 0.68
CLN3-254ENST00000637050 GJC1P36383 396 aa19.27■□□□□ 0.68
CLN3-254ENST00000637050 SLC5A3P53794 718 aa19.27■□□□□ 0.68
CLN3-254ENST00000637050 ROR1Q01973 937 aa19.27■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms