RNA–Protein interactions for RNA: ENST00000613444.4

USP39-220, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-220ENST00000613444 FBXO21O94952 628 aa14.95□□□□□ -0.02
USP39-220ENST00000613444 IL1R2P27930 398 aa14.95□□□□□ -0.02
USP39-220ENST00000613444 ATP13A4Q4VNC1 1196 aa14.95□□□□□ -0.02
USP39-220ENST00000613444 RASIP1Q5U651 963 aa14.95□□□□□ -0.02
USP39-220ENST00000613444 PM20D1Q6GTS8 502 aa14.95□□□□□ -0.02
USP39-220ENST00000613444 HFE2Q6ZVN8 426 aa14.95□□□□□ -0.02
USP39-220ENST00000613444 CYP4V2Q6ZWL3 525 aaPredicted RBP14.95□□□□□ -0.02
USP39-220ENST00000613444 HERC6Q8IVU3 1022 aa14.95□□□□□ -0.02
USP39-220ENST00000613444 KATNAL2Q8IYT4 538 aa14.95□□□□□ -0.02
USP39-220ENST00000613444 SIX6OS1Q8N1H7 587 aa14.95□□□□□ -0.02
USP39-220ENST00000613444 SCML4Q8N228 414 aa14.95□□□□□ -0.02
USP39-220ENST00000613444 ATAD1Q8NBU5 361 aa14.95□□□□□ -0.02
USP39-220ENST00000613444 SP7Q8TDD2 431 aaPredicted RBP14.95□□□□□ -0.02
USP39-220ENST00000613444 RIN2Q8WYP3 895 aaPredicted RBP14.95□□□□□ -0.02
USP39-220ENST00000613444 CLP1Q92989 425 aaKnown RBP14.95□□□□□ -0.02
USP39-220ENST00000613444 TMEM169Q96HH4 297 aa14.95□□□□□ -0.02
USP39-220ENST00000613444 PGLYRP2Q96PD5 576 aa14.95□□□□□ -0.02
USP39-220ENST00000613444 DDX23Q9BUQ8 820 aaKnown RBP14.95□□□□□ -0.02
USP39-220ENST00000613444 CRISPLD1Q9H336 500 aa14.95□□□□□ -0.02
USP39-220ENST00000613444 ASNSD1Q9NWL6 643 aa14.95□□□□□ -0.02
USP39-220ENST00000613444 NOL12Q9UGY1 213 aaKnown RBP eCLIP14.95□□□□□ -0.02
USP39-220ENST00000613444 PCDHB5Q9Y5E4 795 aa14.95□□□□□ -0.02
USP39-220ENST00000613444 V9GYY5 206 aaPredicted RBP14.95□□□□□ -0.02
USP39-220ENST00000613444 MTMR11A4FU01 709 aa14.95□□□□□ -0.02
USP39-220ENST00000613444 CARNS1A5YM72 827 aa14.95□□□□□ -0.02
USP39-220ENST00000613444 YJEFN3A6XGL0 299 aa14.95□□□□□ -0.02
USP39-220ENST00000613444 E7ENQ6 273 aa14.95□□□□□ -0.02
USP39-220ENST00000613444 CEP290O15078 2479 aa14.95□□□□□ -0.02
USP39-220ENST00000613444 HSF2BPO75031 334 aa14.95□□□□□ -0.02
USP39-220ENST00000613444 FYNP06241 537 aa14.95□□□□□ -0.02
USP39-220ENST00000613444 GLI1P08151 1106 aa14.95□□□□□ -0.02
USP39-220ENST00000613444 TFE3P19532 575 aaPredicted RBP14.95□□□□□ -0.02
USP39-220ENST00000613444 PAFAH1B1P43034 410 aa14.95□□□□□ -0.02
USP39-220ENST00000613444 MAGEA11P43364 429 aa14.95□□□□□ -0.02
USP39-220ENST00000613444 DSG1Q02413 1049 aa14.95□□□□□ -0.02
USP39-220ENST00000613444 CCDC181Q5TID7 509 aa14.95□□□□□ -0.02
USP39-220ENST00000613444 VSTM1Q6UX27 236 aa14.95□□□□□ -0.02
USP39-220ENST00000613444 RNF19BQ6ZMZ0 732 aa14.95□□□□□ -0.02
USP39-220ENST00000613444 DDX53Q86TM3 631 aaKnown RBP14.95□□□□□ -0.02
USP39-220ENST00000613444 FBXO22Q8NEZ5 403 aa14.95□□□□□ -0.02
USP39-220ENST00000613444 TSC1Q92574 1164 aa14.95□□□□□ -0.02
USP39-220ENST00000613444 CENPIQ92674 756 aaPredicted RBP14.95□□□□□ -0.02
USP39-220ENST00000613444 RPGRIP1Q96KN7 1286 aa14.95□□□□□ -0.02
USP39-220ENST00000613444 SLC2A13Q96QE2 648 aa14.95□□□□□ -0.02
USP39-220ENST00000613444 HERC2P3Q9BVR0 1158 aa14.95□□□□□ -0.02
USP39-220ENST00000613444 INSL6Q9Y581 213 aa14.95□□□□□ -0.02
USP39-220ENST00000613444 CDY1Q9Y6F8 540 aa14.95□□□□□ -0.02
USP39-220ENST00000613444 GBF1Q92538 1859 aa14.94□□□□□ -0.02
USP39-220ENST00000613444 PGRMC1O00264 195 aaKnown RBP14.94□□□□□ -0.02
USP39-220ENST00000613444 ZBED1O96006 694 aa14.94□□□□□ -0.02
USP39-220ENST00000613444 USP17L7P0C7H9 530 aa14.94□□□□□ -0.02
USP39-220ENST00000613444 PCK1P35558 622 aa14.94□□□□□ -0.02
USP39-220ENST00000613444 GRIK1P39086 918 aa14.94□□□□□ -0.02
USP39-220ENST00000613444 PTPN9P43378 593 aa14.94□□□□□ -0.02
USP39-220ENST00000613444 YWHAZP63104 245 aaKnown RBP14.94□□□□□ -0.02
USP39-220ENST00000613444 PSMD5Q16401 504 aa14.94□□□□□ -0.02
USP39-220ENST00000613444 ERCC6LQ2NKX8 1250 aa14.94□□□□□ -0.02
USP39-220ENST00000613444 POLNQ7Z5Q5 900 aa14.94□□□□□ -0.02
USP39-220ENST00000613444 ANKS1BQ7Z6G8 1248 aa14.94□□□□□ -0.02
USP39-220ENST00000613444 SCAMP5Q8TAC9 235 aa14.94□□□□□ -0.02
USP39-220ENST00000613444 PHOSPHO2Q8TCD6 241 aa14.94□□□□□ -0.02
USP39-220ENST00000613444 NT5C3BQ969T7 300 aa14.94□□□□□ -0.02
USP39-220ENST00000613444 C8orf48Q96LL4 319 aa14.94□□□□□ -0.02
USP39-220ENST00000613444 PEBP4Q96S96 227 aa14.94□□□□□ -0.02
USP39-220ENST00000613444 SLC9A7Q96T83 725 aa14.94□□□□□ -0.02
USP39-220ENST00000613444 CLSTN3Q9BQT9 956 aa14.94□□□□□ -0.02
USP39-220ENST00000613444 CALCOCO1Q9P1Z2 691 aa14.94□□□□□ -0.02
USP39-220ENST00000613444 SLC4A7Q9Y6M7 1214 aa14.94□□□□□ -0.02
USP39-220ENST00000613444 WDR27A2RRH5 827 aa14.94□□□□□ -0.02
USP39-220ENST00000613444 DAB1O75553 588 aa14.94□□□□□ -0.02
USP39-220ENST00000613444 FGGP02679 453 aa14.94□□□□□ -0.02
USP39-220ENST00000613444 CPB1P15086 417 aa14.94□□□□□ -0.02
USP39-220ENST00000613444 RPL17P18621 184 aaKnown RBP14.94□□□□□ -0.02
USP39-220ENST00000613444 MIPP30301 263 aa14.94□□□□□ -0.02
USP39-220ENST00000613444 SDC4P31431 198 aa14.94□□□□□ -0.02
USP39-220ENST00000613444 MATKP42679 507 aa14.94□□□□□ -0.02
USP39-220ENST00000613444 GPR15P49685 360 aa14.94□□□□□ -0.02
USP39-220ENST00000613444 SLC5A3P53794 718 aa14.94□□□□□ -0.02
USP39-220ENST00000613444 ARPP19P56211 112 aa14.94□□□□□ -0.02
USP39-220ENST00000613444 C2orf54Q08AI8 447 aa14.94□□□□□ -0.02
USP39-220ENST00000613444 SMARCB1Q12824 385 aa14.94□□□□□ -0.02
USP39-220ENST00000613444 OTUD1Q5VV17 481 aaPredicted RBP14.94□□□□□ -0.02
USP39-220ENST00000613444 BNIPLQ7Z465 357 aa14.94□□□□□ -0.02
USP39-220ENST00000613444 ZDHHC14Q8IZN3 488 aa14.94□□□□□ -0.02
USP39-220ENST00000613444 DEFB106AQ8N104 65 aa14.94□□□□□ -0.02
USP39-220ENST00000613444 FIBCD1Q8N539 461 aa14.94□□□□□ -0.02
USP39-220ENST00000613444 RAD9AQ99638 391 aa14.94□□□□□ -0.02
USP39-220ENST00000613444 RBM12Q9NTZ6 932 aaKnown RBP14.94□□□□□ -0.02
USP39-220ENST00000613444 SBDSQ9Y3A5 250 aaKnown RBP eCLIP14.94□□□□□ -0.02
USP39-220ENST00000613444 NR2E1Q9Y466 385 aa14.94□□□□□ -0.02
USP39-220ENST00000613444 CHD9Q3L8U1 2897 aa14.93□□□□□ -0.02
USP39-220ENST00000613444 LCHNA4D1U4 455 aa14.93□□□□□ -0.02
USP39-220ENST00000613444 SSR1P43307 286 aaKnown RBP14.93□□□□□ -0.02
USP39-220ENST00000613444 HDAC4P56524 1084 aa14.93□□□□□ -0.02
USP39-220ENST00000613444 ATP11AP98196 1134 aa14.93□□□□□ -0.02
USP39-220ENST00000613444 ROR1Q01973 937 aa14.93□□□□□ -0.02
USP39-220ENST00000613444 DDR2Q16832 855 aa14.93□□□□□ -0.02
USP39-220ENST00000613444 EXD1Q8NHP7 514 aa14.93□□□□□ -0.02
USP39-220ENST00000613444 SPPL2BQ8TCT7 592 aa14.93□□□□□ -0.02
USP39-220ENST00000613444 IRGQQ8WZA9 623 aa14.93□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms