RNA–Protein interactions for RNA: ENST00000570296.1

CLK3-227, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 916 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-227ENST00000570296 MYO1EQ12965 1108 aa19.35■□□□□ 0.69
CLK3-227ENST00000570296 RTP5Q14D33 572 aa19.35■□□□□ 0.69
CLK3-227ENST00000570296 SV2CQ496J9 727 aa19.35■□□□□ 0.69
CLK3-227ENST00000570296 CCDC157Q569K6 752 aa19.35■□□□□ 0.69
CLK3-227ENST00000570296 INTS6LQ5JSJ4 861 aaKnown RBP19.35■□□□□ 0.69
CLK3-227ENST00000570296 LY6G5CQ5SRR4 150 aa19.35■□□□□ 0.69
CLK3-227ENST00000570296 BTBD8Q5XKL5 378 aa19.35■□□□□ 0.69
CLK3-227ENST00000570296 OTUB2Q96DC9 234 aa19.35■□□□□ 0.69
CLK3-227ENST00000570296 FUBP3Q96I24 572 aaKnown RBP eCLIP19.35■□□□□ 0.69
CLK3-227ENST00000570296 MRGPRX1Q96LB2 322 aa19.35■□□□□ 0.69
CLK3-227ENST00000570296 PKMYT1Q99640 499 aa19.35■□□□□ 0.69
CLK3-227ENST00000570296 GABRG3Q99928 467 aa19.35■□□□□ 0.69
CLK3-227ENST00000570296 NRSN2Q9GZP1 204 aa19.35■□□□□ 0.69
CLK3-227ENST00000570296 CFAP97Q9P2B7 532 aa19.35■□□□□ 0.69
CLK3-227ENST00000570296 C2CD2Q9Y426 696 aa19.35■□□□□ 0.69
CLK3-227ENST00000570296 TMEM131Q92545 1883 aa19.35■□□□□ 0.69
CLK3-227ENST00000570296 H0YCG3 227 aa19.34■□□□□ 0.69
CLK3-227ENST00000570296 HOXC11O43248 304 aaPredicted RBP19.34■□□□□ 0.69
CLK3-227ENST00000570296 MAGEA11P43364 429 aa19.34■□□□□ 0.69
CLK3-227ENST00000570296 LIG4P49917 911 aa19.34■□□□□ 0.69
CLK3-227ENST00000570296 CXADRP78310 365 aa19.34■□□□□ 0.69
CLK3-227ENST00000570296 METTL3Q86U44 580 aaKnown RBP19.34■□□□□ 0.69
CLK3-227ENST00000570296 SCN4BQ8IWT1 228 aa19.34■□□□□ 0.69
CLK3-227ENST00000570296 CHPFQ8IZ52 775 aa19.34■□□□□ 0.69
CLK3-227ENST00000570296 KCNN1Q92952 543 aa19.34■□□□□ 0.69
CLK3-227ENST00000570296 CEP295NLQ96MC4 621 aa19.34■□□□□ 0.69
CLK3-227ENST00000570296 ASB7Q9H672 318 aa19.34■□□□□ 0.69
CLK3-227ENST00000570296 WSB2Q9NYS7 404 aaPredicted RBP19.34■□□□□ 0.69
CLK3-227ENST00000570296 CPSF3Q9UKF6 684 aaKnown RBP19.34■□□□□ 0.69
CLK3-227ENST00000570296 PCDHGA1Q9Y5H4 931 aa19.34■□□□□ 0.69
CLK3-227ENST00000570296 MYO9AB2RTY4 2548 aa19.33■□□□□ 0.69
CLK3-227ENST00000570296 MYLKQ15746 1914 aa19.33■□□□□ 0.69
CLK3-227ENST00000570296 E9PMD0 336 aa19.33■□□□□ 0.68
CLK3-227ENST00000570296 PYCARD-AS1I3L0S3 204 aa19.33■□□□□ 0.68
CLK3-227ENST00000570296 SCAMP3O14828 347 aaKnown RBP19.33■□□□□ 0.68
CLK3-227ENST00000570296 CTDNEP1O95476 244 aa19.33■□□□□ 0.68
CLK3-227ENST00000570296 C6P13671 934 aa19.33■□□□□ 0.68
CLK3-227ENST00000570296 JUPP14923 745 aa19.33■□□□□ 0.68
CLK3-227ENST00000570296 IL12RB1P42701 662 aa19.33■□□□□ 0.68
CLK3-227ENST00000570296 PPP3CCP48454 512 aa19.33■□□□□ 0.68
CLK3-227ENST00000570296 FXR2P51116 673 aaKnown RBP eCLIP19.33■□□□□ 0.68
CLK3-227ENST00000570296 EGFLAMQ63HQ2 1017 aa19.33■□□□□ 0.68
CLK3-227ENST00000570296 KIAA1324Q6UXG2 1013 aaKnown RBP19.33■□□□□ 0.68
CLK3-227ENST00000570296 SPATA2LQ8IUW3 424 aaPredicted RBP19.33■□□□□ 0.68
CLK3-227ENST00000570296 PDCL2Q8N4E4 241 aa19.33■□□□□ 0.68
CLK3-227ENST00000570296 FGF11Q92914 225 aa19.33■□□□□ 0.68
CLK3-227ENST00000570296 TOE1Q96GM8 510 aaKnown RBP19.33■□□□□ 0.68
CLK3-227ENST00000570296 SPATA17Q96L03 361 aa19.33■□□□□ 0.68
CLK3-227ENST00000570296 ZNF560Q96MR9 790 aa19.33■□□□□ 0.68
CLK3-227ENST00000570296 RNF38Q9H0F5 515 aa19.33■□□□□ 0.68
CLK3-227ENST00000570296 SMPD4Q9NXE4 827 aa19.33■□□□□ 0.68
CLK3-227ENST00000570296 DPP3Q9NY33 737 aa19.33■□□□□ 0.68
CLK3-227ENST00000570296 LRWD1Q9UFC0 647 aa19.33■□□□□ 0.68
CLK3-227ENST00000570296 DACH1Q9UI36 760 aa19.33■□□□□ 0.68
CLK3-227ENST00000570296 ZNF840PA6NDX5 716 aa19.32■□□□□ 0.68
CLK3-227ENST00000570296 HNRNPDLO14979 420 aaKnown RBP19.32■□□□□ 0.68
CLK3-227ENST00000570296 PCDHGA12O60330 932 aa19.32■□□□□ 0.68
CLK3-227ENST00000570296 PFKFB2O60825 505 aa19.32■□□□□ 0.68
CLK3-227ENST00000570296 DTNBO60941 627 aa19.32■□□□□ 0.68
CLK3-227ENST00000570296 CDK4P11802 303 aa19.32■□□□□ 0.68
CLK3-227ENST00000570296 FDPSP14324 419 aaKnown RBP19.32■□□□□ 0.68
CLK3-227ENST00000570296 PNPLA4P41247 253 aa19.32■□□□□ 0.68
CLK3-227ENST00000570296 MYL7Q01449 175 aa19.32■□□□□ 0.68
CLK3-227ENST00000570296 DCAF12L1Q5VU92 463 aa19.32■□□□□ 0.68
CLK3-227ENST00000570296 FMNL3Q8IVF7 1028 aa19.32■□□□□ 0.68
CLK3-227ENST00000570296 NAT16Q8N8M0 369 aa19.32■□□□□ 0.68
CLK3-227ENST00000570296 SNX29Q8TEQ0 813 aa19.32■□□□□ 0.68
CLK3-227ENST00000570296 ACOX2Q99424 681 aa19.32■□□□□ 0.68
CLK3-227ENST00000570296 MSTO1Q9BUK6 570 aa19.32■□□□□ 0.68
CLK3-227ENST00000570296 GPR174Q9BXC1 333 aa19.32■□□□□ 0.68
CLK3-227ENST00000570296 SLC6A17Q9H1V8 727 aa19.32■□□□□ 0.68
CLK3-227ENST00000570296 DDX43Q9NXZ2 648 aaKnown RBP19.32■□□□□ 0.68
CLK3-227ENST00000570296 EHD2Q9NZN4 543 aa19.32■□□□□ 0.68
CLK3-227ENST00000570296 GMIPQ9P107 970 aa19.32■□□□□ 0.68
CLK3-227ENST00000570296 GTF3C4Q9UKN8 822 aa19.32■□□□□ 0.68
CLK3-227ENST00000570296 PCDHB6Q9Y5E3 794 aa19.32■□□□□ 0.68
CLK3-227ENST00000570296 DOPEY2Q9Y3R5 2298 aa19.32■□□□□ 0.68
CLK3-227ENST00000570296 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP19.31■□□□□ 0.68
CLK3-227ENST00000570296 A0A0B4J269 797 aa19.31■□□□□ 0.68
CLK3-227ENST00000570296 A0A1B0GVT2 93 aa19.31■□□□□ 0.68
CLK3-227ENST00000570296 E2F8A0AVK6 867 aa19.31■□□□□ 0.68
CLK3-227ENST00000570296 METTL12A8MUP2 240 aa19.31■□□□□ 0.68
CLK3-227ENST00000570296 PIGRP01833 764 aa19.31■□□□□ 0.68
CLK3-227ENST00000570296 CSRP3P50461 194 aa19.31■□□□□ 0.68
CLK3-227ENST00000570296 INAVAQ3KP66 663 aa19.31■□□□□ 0.68
CLK3-227ENST00000570296 PKDCCQ504Y2 493 aa19.31■□□□□ 0.68
CLK3-227ENST00000570296 TMEM86AQ8N2M4 240 aa19.31■□□□□ 0.68
CLK3-227ENST00000570296 C1orf216Q8TAB5 229 aa19.31■□□□□ 0.68
CLK3-227ENST00000570296 TMEM176AQ96HP8 235 aa19.31■□□□□ 0.68
CLK3-227ENST00000570296 TM6SF1Q9BZW5 370 aa19.31■□□□□ 0.68
CLK3-227ENST00000570296 USP36Q9P275 1121 aaKnown RBP19.31■□□□□ 0.68
CLK3-227ENST00000570296 FTSJ1Q9UET6 329 aa19.31■□□□□ 0.68
CLK3-227ENST00000570296 GFRA2O00451 464 aa19.3■□□□□ 0.68
CLK3-227ENST00000570296 OAS1P00973 400 aaKnown RBP19.3■□□□□ 0.68
CLK3-227ENST00000570296 ACAT1P24752 427 aaKnown RBP19.3■□□□□ 0.68
CLK3-227ENST00000570296 AFF3P51826 1226 aaKnown RBP19.3■□□□□ 0.68
CLK3-227ENST00000570296 NCKAP1LP55160 1127 aa19.3■□□□□ 0.68
CLK3-227ENST00000570296 SF3A1Q15459 793 aaKnown RBP19.3■□□□□ 0.68
CLK3-227ENST00000570296 DENND5BQ6ZUT9 1274 aa19.3■□□□□ 0.68
CLK3-227ENST00000570296 SPACA3Q8IXA5 215 aa19.3■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms