RNA–Protein interactions for RNA: ENST00000558528.1

LDLR-209, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 456 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-209ENST00000558528 TMEM169Q96HH4 297 aa5.53□□□□□ -1.52
LDLR-209ENST00000558528 ZC3H10Q96K80 434 aaKnown RBP5.53□□□□□ -1.52
LDLR-209ENST00000558528 TRIM47Q96LD4 638 aa5.53□□□□□ -1.52
LDLR-209ENST00000558528 ACCSQ96QU6 501 aa5.53□□□□□ -1.52
LDLR-209ENST00000558528 GPR20Q99678 358 aa5.53□□□□□ -1.52
LDLR-209ENST00000558528 REEP2Q9BRK0 252 aa5.53□□□□□ -1.52
LDLR-209ENST00000558528 NTPCRQ9BSD7 190 aaKnown RBP5.53□□□□□ -1.52
LDLR-209ENST00000558528 SEZ6LQ9BYH1 1024 aa5.53□□□□□ -1.52
LDLR-209ENST00000558528 C2orf40Q9H1Z8 148 aa5.53□□□□□ -1.52
LDLR-209ENST00000558528 SEMA6BQ9H3T3 888 aa5.53□□□□□ -1.52
LDLR-209ENST00000558528 IPPKQ9H8X2 491 aa5.53□□□□□ -1.52
LDLR-209ENST00000558528 DNAJC28Q9NX36 388 aa5.53□□□□□ -1.52
LDLR-209ENST00000558528 H2AFY2Q9P0M6 372 aaPredicted RBP5.53□□□□□ -1.52
LDLR-209ENST00000558528 GJD2Q9UKL4 321 aa5.53□□□□□ -1.52
LDLR-209ENST00000558528 ZHX1Q9UKY1 873 aaPredicted RBP5.53□□□□□ -1.52
LDLR-209ENST00000558528 ZMYND8Q9ULU4 1186 aaPredicted RBP5.53□□□□□ -1.52
LDLR-209ENST00000558528 PADI4Q9UM07 663 aa5.53□□□□□ -1.52
LDLR-209ENST00000558528 TRAF3IP3Q9Y228 551 aa5.53□□□□□ -1.52
LDLR-209ENST00000558528 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP5.53□□□□□ -1.522e-13■□□□□ 8.9
LDLR-209ENST00000558528 ZSWIM8A7E2V4 1837 aa5.53□□□□□ -1.52
LDLR-209ENST00000558528 SYNRGQ9UMZ2 1314 aa5.52□□□□□ -1.53
LDLR-209ENST00000558528 IGSF9BQ9UPX0 1349 aa5.52□□□□□ -1.53
LDLR-209ENST00000558528 SPTBN4Q9H254 2564 aa5.52□□□□□ -1.53
LDLR-209ENST00000558528 EPG5Q9HCE0 2579 aa5.52□□□□□ -1.53
LDLR-209ENST00000558528 M0R082 166 aa5.52□□□□□ -1.53
LDLR-209ENST00000558528 DYNC1LI2O43237 492 aaPredicted RBP5.52□□□□□ -1.53
LDLR-209ENST00000558528 MGEA5O60502 916 aa5.52□□□□□ -1.53
LDLR-209ENST00000558528 USO1O60763 962 aaKnown RBP5.52□□□□□ -1.53
LDLR-209ENST00000558528 DUSP11O75319 330 aaKnown RBP5.52□□□□□ -1.53
LDLR-209ENST00000558528 MAFO75444 373 aaPredicted RBP5.52□□□□□ -1.53
LDLR-209ENST00000558528 PRAMEF1O95521 474 aa5.52□□□□□ -1.53
LDLR-209ENST00000558528 EPXP11678 715 aa5.52□□□□□ -1.53
LDLR-209ENST00000558528 PAMP19021 973 aa5.52□□□□□ -1.53
LDLR-209ENST00000558528 CYP2B6P20813 491 aa5.52□□□□□ -1.53
LDLR-209ENST00000558528 AGXTP21549 392 aa5.52□□□□□ -1.53
LDLR-209ENST00000558528 ENPP1P22413 925 aa5.52□□□□□ -1.53
LDLR-209ENST00000558528 EFNA5P52803 228 aa5.52□□□□□ -1.53
LDLR-209ENST00000558528 SLC5A3P53794 718 aa5.52□□□□□ -1.53
LDLR-209ENST00000558528 SLC16A1P53985 500 aa5.52□□□□□ -1.53
LDLR-209ENST00000558528 IRF9Q00978 393 aa5.52□□□□□ -1.53
LDLR-209ENST00000558528 SP2Q02086 613 aa5.52□□□□□ -1.53
LDLR-209ENST00000558528 PRKCEQ02156 737 aa5.52□□□□□ -1.53
LDLR-209ENST00000558528 NCBP1Q09161 790 aaKnown RBP5.52□□□□□ -1.53
LDLR-209ENST00000558528 CETN1Q12798 172 aa5.52□□□□□ -1.53
LDLR-209ENST00000558528 TRIM14Q14142 442 aa5.52□□□□□ -1.53
LDLR-209ENST00000558528 FKBP15Q5T1M5 1219 aa5.52□□□□□ -1.53
LDLR-209ENST00000558528 UTP14CQ5TAP6 766 aaKnown RBP5.52□□□□□ -1.53
LDLR-209ENST00000558528 ANKRD34AQ69YU3 496 aa5.52□□□□□ -1.53
LDLR-209ENST00000558528 SLFN12LQ6IEE8 588 aa5.52□□□□□ -1.53
LDLR-209ENST00000558528 TLDC1Q6P9B6 456 aa5.52□□□□□ -1.53
LDLR-209ENST00000558528 FAM43BQ6ZT52 329 aaPredicted RBP5.52□□□□□ -1.53
LDLR-209ENST00000558528 USP45Q70EL2 814 aa5.52□□□□□ -1.53
LDLR-209ENST00000558528 ANO5Q75V66 913 aa5.52□□□□□ -1.53
LDLR-209ENST00000558528 OVCH2Q7RTZ1 564 aa5.52□□□□□ -1.53
LDLR-209ENST00000558528 CDH24Q86UP0 819 aa5.52□□□□□ -1.53
LDLR-209ENST00000558528 PTRH1Q86Y79 214 aaKnown RBP5.52□□□□□ -1.53
LDLR-209ENST00000558528 CCDC60Q8IWA6 550 aaPredicted RBP5.52□□□□□ -1.53
LDLR-209ENST00000558528 FBXO16Q8IX29 292 aaPredicted RBP5.52□□□□□ -1.53
LDLR-209ENST00000558528 KIAA0319LQ8IZA0 1049 aa5.52□□□□□ -1.53
LDLR-209ENST00000558528 SYCP3Q8IZU3 236 aa5.52□□□□□ -1.53
LDLR-209ENST00000558528 OR2C3Q8N628 320 aa5.52□□□□□ -1.53
LDLR-209ENST00000558528 ZNF655Q8N720 491 aaPredicted RBP5.52□□□□□ -1.53
LDLR-209ENST00000558528 CCDC89Q8N998 374 aa5.52□□□□□ -1.53
LDLR-209ENST00000558528 ZNF417Q8TAU3 575 aa5.52□□□□□ -1.53
LDLR-209ENST00000558528 ATP8B4Q8TF62 1192 aa5.52□□□□□ -1.53
LDLR-209ENST00000558528 TMEM174Q8WUU8 243 aa5.52□□□□□ -1.53
LDLR-209ENST00000558528 UIMC1Q96RL1 719 aa5.52□□□□□ -1.53
LDLR-209ENST00000558528 ZNF587Q96SQ5 575 aaPredicted RBP5.52□□□□□ -1.53
LDLR-209ENST00000558528 UHRF1Q96T88 793 aaPredicted RBP5.52□□□□□ -1.53
LDLR-209ENST00000558528 NUP58Q9BVL2 599 aa5.52□□□□□ -1.53
LDLR-209ENST00000558528 YIPF2Q9BWQ6 316 aa5.52□□□□□ -1.53
LDLR-209ENST00000558528 WDR12Q9GZL7 423 aaKnown RBP5.52□□□□□ -1.53
LDLR-209ENST00000558528 DHX33Q9H6R0 707 aaKnown RBP5.52□□□□□ -1.53
LDLR-209ENST00000558528 RSAD1Q9HA92 442 aa5.52□□□□□ -1.53
LDLR-209ENST00000558528 KIAA1586Q9HCI6 787 aa5.52□□□□□ -1.53
LDLR-209ENST00000558528 GPRC5CQ9NQ84 441 aa5.52□□□□□ -1.53
LDLR-209ENST00000558528 KMT5AQ9NQR1 393 aa5.52□□□□□ -1.53
LDLR-209ENST00000558528 PLA2G2EQ9NZK7 142 aa5.52□□□□□ -1.53
LDLR-209ENST00000558528 TBC1D7Q9P0N9 293 aa5.52□□□□□ -1.53
LDLR-209ENST00000558528 LIMA1Q9UHB6 759 aaKnown RBP5.52□□□□□ -1.53
LDLR-209ENST00000558528 CTNND2Q9UQB3 1225 aa5.52□□□□□ -1.53
LDLR-209ENST00000558528 FRMD4BQ9Y2L6 1034 aa5.52□□□□□ -1.53
LDLR-209ENST00000558528 GDAQ9Y2T3 454 aa5.52□□□□□ -1.53
LDLR-209ENST00000558528 PCDHA2Q9Y5H9 948 aa5.52□□□□□ -1.53
LDLR-209ENST00000558528 PHIPQ8WWQ0 1821 aa5.52□□□□□ -1.53
LDLR-209ENST00000558528 DNAH12Q6ZR08 3092 aa5.52□□□□□ -1.53
LDLR-209ENST00000558528 COL1A2P08123 1366 aa5.52□□□□□ -1.53
LDLR-209ENST00000558528 ASTN1O14525 1302 aa5.51□□□□□ -1.53
LDLR-209ENST00000558528 ATAD5Q96QE3 1844 aa5.51□□□□□ -1.53
LDLR-209ENST00000558528 KMT2BQ9UMN6 2715 aaPredicted RBP5.51□□□□□ -1.53
LDLR-209ENST00000558528 CCDC169A6NNP5 214 aa5.51□□□□□ -1.53
LDLR-209ENST00000558528 A6NNZ2 444 aa5.51□□□□□ -1.53
LDLR-209ENST00000558528 KCNJ18B7U540 433 aa5.51□□□□□ -1.53
LDLR-209ENST00000558528 SHISA8B8ZZ34 492 aa5.51□□□□□ -1.53
LDLR-209ENST00000558528 ZNF561-AS1K7EIQ3 104 aa5.51□□□□□ -1.53
LDLR-209ENST00000558528 N4BP3O15049 544 aa5.51□□□□□ -1.53
LDLR-209ENST00000558528 MAPK13O15264 365 aa5.51□□□□□ -1.53
LDLR-209ENST00000558528 SLC16A3O15427 465 aaKnown RBP5.51□□□□□ -1.53
LDLR-209ENST00000558528 SEPT4O43236 478 aa5.51□□□□□ -1.53
LDLR-209ENST00000558528 STX10O60499 249 aa5.51□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms