RNA–Protein interactions for RNA: ENST00000541005.1

LTBR-208, Transcript of lymphotoxin beta receptor, humanhuman

TSL 2

Gene LTBR, Length 583 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LTBR-208ENST00000541005 TTC30AQ86WT1 665 aa13.84□□□□□ -0.19
LTBR-208ENST00000541005 CSGALNACT1Q8TDX6 532 aa13.84□□□□□ -0.19
LTBR-208ENST00000541005 ZFYVE19Q96K21 471 aa13.84□□□□□ -0.19
LTBR-208ENST00000541005 CYP2S1Q96SQ9 504 aa13.84□□□□□ -0.19
LTBR-208ENST00000541005 NELL2Q99435 816 aa13.84□□□□□ -0.19
LTBR-208ENST00000541005 FOXQ1Q9C009 403 aa13.84□□□□□ -0.19
LTBR-208ENST00000541005 C8orf33Q9H7E9 229 aaPredicted RBP13.84□□□□□ -0.19
LTBR-208ENST00000541005 ANO10Q9NW15 660 aa13.84□□□□□ -0.19
LTBR-208ENST00000541005 GMIPQ9P107 970 aa13.84□□□□□ -0.19
LTBR-208ENST00000541005 MRPS17Q9Y2R5 130 aaKnown RBP13.84□□□□□ -0.19
LTBR-208ENST00000541005 SIT1Q9Y3P8 196 aa13.84□□□□□ -0.19
LTBR-208ENST00000541005 USP3Q9Y6I4 520 aa13.84□□□□□ -0.19
LTBR-208ENST00000541005 PIAS3Q9Y6X2 628 aa13.84□□□□□ -0.19
LTBR-208ENST00000541005 WDFY4Q6ZS81 3184 aa13.83□□□□□ -0.19
LTBR-208ENST00000541005 TARSP26639 723 aaKnown RBP13.83□□□□□ -0.2
LTBR-208ENST00000541005 EEF1GP26641 437 aaKnown RBP13.83□□□□□ -0.2
LTBR-208ENST00000541005 MAGEA9P43362 315 aa13.83□□□□□ -0.2
LTBR-208ENST00000541005 BCAT1P54687 386 aa13.83□□□□□ -0.2
LTBR-208ENST00000541005 ZXDBP98169 803 aa13.83□□□□□ -0.2
LTBR-208ENST00000541005 PDGFRLQ15198 375 aa13.83□□□□□ -0.2
LTBR-208ENST00000541005 STILQ15468 1287 aa13.83□□□□□ -0.2
LTBR-208ENST00000541005 STX1AQ16623 288 aa13.83□□□□□ -0.2
LTBR-208ENST00000541005 EXOC3L4Q17RC7 722 aa13.83□□□□□ -0.2
LTBR-208ENST00000541005 GOLGA7BQ2TAP0 167 aa13.83□□□□□ -0.2
LTBR-208ENST00000541005 RAB41Q5JT25 222 aa13.83□□□□□ -0.2
LTBR-208ENST00000541005 HECTD3Q5T447 861 aa13.83□□□□□ -0.2
LTBR-208ENST00000541005 CDKAL1Q5VV42 579 aa13.83□□□□□ -0.2
LTBR-208ENST00000541005 LCLAT1Q6UWP7 414 aa13.83□□□□□ -0.2
LTBR-208ENST00000541005 RRAGAQ7L523 313 aa13.83□□□□□ -0.2
LTBR-208ENST00000541005 RALGPS2Q86X27 583 aaPredicted RBP13.83□□□□□ -0.2
LTBR-208ENST00000541005 ZNF276Q8N554 614 aa13.83□□□□□ -0.2
LTBR-208ENST00000541005 PRSS33Q8NF86 280 aa13.83□□□□□ -0.2
LTBR-208ENST00000541005 SH3RF2Q8TEC5 729 aa13.83□□□□□ -0.2
LTBR-208ENST00000541005 OSCP1Q8WVF1 389 aa13.83□□□□□ -0.2
LTBR-208ENST00000541005 CLDN23Q96B33 292 aa13.83□□□□□ -0.2
LTBR-208ENST00000541005 RNF38Q9H0F5 515 aa13.83□□□□□ -0.2
LTBR-208ENST00000541005 CYLDQ9NQC7 956 aa13.83□□□□□ -0.2
LTBR-208ENST00000541005 HPS4Q9NQG7 708 aa13.83□□□□□ -0.2
LTBR-208ENST00000541005 TLR8Q9NR97 1041 aaKnown RBP13.83□□□□□ -0.2
LTBR-208ENST00000541005 TMEM63CQ9P1W3 806 aa13.83□□□□□ -0.2
LTBR-208ENST00000541005 TSPAN16Q9UKR8 245 aa13.83□□□□□ -0.2
LTBR-208ENST00000541005 NFE2L3Q9Y4A8 694 aa13.83□□□□□ -0.2
LTBR-208ENST00000541005 PCDHB4Q9Y5E5 795 aa13.83□□□□□ -0.2
LTBR-208ENST00000541005 KCNJ18B7U540 433 aa13.82□□□□□ -0.2
LTBR-208ENST00000541005 RNF225M0QZC1 329 aaPredicted RBP13.82□□□□□ -0.2
LTBR-208ENST00000541005 XPO1O14980 1071 aaKnown RBP13.82□□□□□ -0.2
LTBR-208ENST00000541005 CYP26A1O43174 497 aa13.82□□□□□ -0.2
LTBR-208ENST00000541005 COCHO43405 550 aa13.82□□□□□ -0.2
LTBR-208ENST00000541005 SETSIPP0DME0 302 aa13.82□□□□□ -0.2
LTBR-208ENST00000541005 CD19P15391 556 aa13.82□□□□□ -0.2
LTBR-208ENST00000541005 PON1P27169 355 aa13.82□□□□□ -0.2
LTBR-208ENST00000541005 CTHP32929 405 aa13.82□□□□□ -0.2
LTBR-208ENST00000541005 RPS9P46781 194 aaKnown RBP13.82□□□□□ -0.2
LTBR-208ENST00000541005 PLA2G4AP47712 749 aa13.82□□□□□ -0.2
LTBR-208ENST00000541005 PGFP49763 221 aa13.82□□□□□ -0.2
LTBR-208ENST00000541005 PSEN1P49768 467 aa13.82□□□□□ -0.2
LTBR-208ENST00000541005 SLC8A3P57103 927 aa13.82□□□□□ -0.2
LTBR-208ENST00000541005 TNK2Q07912 1038 aa13.82□□□□□ -0.2
LTBR-208ENST00000541005 BST2Q10589 180 aaKnown RBP13.82□□□□□ -0.2
LTBR-208ENST00000541005 TCF15Q12870 199 aa13.82□□□□□ -0.2
LTBR-208ENST00000541005 KCNJ12Q14500 433 aa13.82□□□□□ -0.2
LTBR-208ENST00000541005 MEA1Q16626 185 aa13.82□□□□□ -0.2
LTBR-208ENST00000541005 ITPRIPL2Q3MIP1 535 aa13.82□□□□□ -0.2
LTBR-208ENST00000541005 VWA3BQ502W6 1294 aa13.82□□□□□ -0.2
LTBR-208ENST00000541005 TCP11X2Q5H9J9 407 aa13.82□□□□□ -0.2
LTBR-208ENST00000541005 CC2D1AQ6P1N0 951 aaPredicted RBP13.82□□□□□ -0.2
LTBR-208ENST00000541005 KLHDC10Q6PID8 442 aa13.82□□□□□ -0.2
LTBR-208ENST00000541005 SASS6Q6UVJ0 657 aa13.82□□□□□ -0.2
LTBR-208ENST00000541005 C11orf57Q6ZUT1 292 aaPredicted RBP13.82□□□□□ -0.2
LTBR-208ENST00000541005 PIGZQ86VD9 579 aa13.82□□□□□ -0.2
LTBR-208ENST00000541005 DDX42Q86XP3 938 aaKnown RBP eCLIP13.82□□□□□ -0.2
LTBR-208ENST00000541005 CREBRFQ8IUR6 639 aa13.82□□□□□ -0.2
LTBR-208ENST00000541005 DTWD2Q8NBA8 298 aa13.82□□□□□ -0.2
LTBR-208ENST00000541005 RBBP8NLQ8NC74 664 aaPredicted RBP13.82□□□□□ -0.2
LTBR-208ENST00000541005 TFAP2BQ92481 460 aa13.82□□□□□ -0.2
LTBR-208ENST00000541005 ZFRQ96KR1 1074 aaKnown RBP13.82□□□□□ -0.2
LTBR-208ENST00000541005 ZSWIM1Q9BR11 485 aa13.82□□□□□ -0.2
LTBR-208ENST00000541005 TUBGCP2Q9BSJ2 902 aa13.82□□□□□ -0.2
LTBR-208ENST00000541005 CRACR2AQ9BSW2 395 aa13.82□□□□□ -0.2
LTBR-208ENST00000541005 NDST4Q9H3R1 872 aa13.82□□□□□ -0.2
LTBR-208ENST00000541005 GKN1Q9NS71 199 aa13.82□□□□□ -0.2
LTBR-208ENST00000541005 SAMSN1Q9NSI8 373 aaKnown RBP13.82□□□□□ -0.2
LTBR-208ENST00000541005 GTSE1Q9NYZ3 720 aa13.82□□□□□ -0.2
LTBR-208ENST00000541005 APEX2Q9UBZ4 518 aa13.82□□□□□ -0.2
LTBR-208ENST00000541005 CHORDC1Q9UHD1 332 aaPredicted RBP13.82□□□□□ -0.2
LTBR-208ENST00000541005 WDR3Q9UNX4 943 aaKnown RBP eCLIP13.82□□□□□ -0.2
LTBR-208ENST00000541005 SPECC1L-ADORA2AF8WAN1 911 aa13.81□□□□□ -0.2
LTBR-208ENST00000541005 LEFTY2O00292 366 aa13.81□□□□□ -0.2
LTBR-208ENST00000541005 STK25O00506 426 aa13.81□□□□□ -0.2
LTBR-208ENST00000541005 TLR5O60602 858 aa13.81□□□□□ -0.2
LTBR-208ENST00000541005 ABL1P00519 1130 aa13.81□□□□□ -0.2
LTBR-208ENST00000541005 SLC9A1P19634 815 aa13.81□□□□□ -0.2
LTBR-208ENST00000541005 KPNA1P52294 538 aaPredicted RBP13.81□□□□□ -0.2
LTBR-208ENST00000541005 PTPN5P54829 565 aa13.81□□□□□ -0.2
LTBR-208ENST00000541005 PDE4CQ08493 712 aa13.81□□□□□ -0.2
LTBR-208ENST00000541005 FZD5Q13467 585 aa13.81□□□□□ -0.2
LTBR-208ENST00000541005 RUNX3Q13761 415 aa13.81□□□□□ -0.2
LTBR-208ENST00000541005 UBXN2BQ14CS0 331 aa13.81□□□□□ -0.2
LTBR-208ENST00000541005 CNGA2Q16280 664 aa13.81□□□□□ -0.2
LTBR-208ENST00000541005 EML3Q32P44 896 aa13.81□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms