RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 TTC17Q96AE7 1141 aa17.66■□□□□ 0.42
USP28-208ENST00000540438 MPHOSPH6Q99547 160 aaKnown RBP17.66■□□□□ 0.42
USP28-208ENST00000540438 ETNK2Q9NVF9 386 aa17.66■□□□□ 0.42
USP28-208ENST00000540438 GPD1P21695 349 aa17.66■□□□□ 0.42
USP28-208ENST00000540438 SPNS2Q8IVW8 549 aa17.66■□□□□ 0.42
USP28-208ENST00000540438 ANKLE1Q8NAG6 615 aa17.66■□□□□ 0.42
USP28-208ENST00000540438 MECRQ9BV79 373 aa17.66■□□□□ 0.42
USP28-208ENST00000540438 NT5C1AQ9BXI3 368 aa17.66■□□□□ 0.42
USP28-208ENST00000540438 SEPT10Q9P0V9 454 aa17.66■□□□□ 0.42
USP28-208ENST00000540438 RABGEF1Q9UJ41 708 aa17.66■□□□□ 0.42
USP28-208ENST00000540438 STRIP2Q9ULQ0 834 aa17.66■□□□□ 0.42
USP28-208ENST00000540438 PTPRFP10586 1907 aa17.65■□□□□ 0.42
USP28-208ENST00000540438 CXCL11O14625 94 aa17.65■□□□□ 0.42
USP28-208ENST00000540438 RASSF9O75901 435 aa17.65■□□□□ 0.42
USP28-208ENST00000540438 CBX6O95503 412 aa17.65■□□□□ 0.42
USP28-208ENST00000540438 KRT7P08729 469 aa17.65■□□□□ 0.42
USP28-208ENST00000540438 GTF2A2P52657 109 aa17.65■□□□□ 0.42
USP28-208ENST00000540438 PPP1R21Q6ZMI0 780 aa17.65■□□□□ 0.42
USP28-208ENST00000540438 PARP9Q8IXQ6 854 aa17.65■□□□□ 0.42
USP28-208ENST00000540438 TCP10LQ8TDR4 215 aa17.65■□□□□ 0.42
USP28-208ENST00000540438 ERP27Q96DN0 273 aa17.65■□□□□ 0.42
USP28-208ENST00000540438 ZFP42Q96MM3 310 aa17.65■□□□□ 0.42
USP28-208ENST00000540438 NSRP1Q9H0G5 558 aaKnown RBP17.65■□□□□ 0.42
USP28-208ENST00000540438 UBN1Q9NPG3 1134 aa17.65■□□□□ 0.42
USP28-208ENST00000540438 PHTF1Q9UMS5 762 aa17.65■□□□□ 0.42
USP28-208ENST00000540438 PIN4Q9Y237 131 aaKnown RBP17.65■□□□□ 0.42
USP28-208ENST00000540438 CXorf49A8MYA2 514 aaPredicted RBP17.65■□□□□ 0.42
USP28-208ENST00000540438 SPTLC1O15269 473 aa17.65■□□□□ 0.42
USP28-208ENST00000540438 AP3M2P53677 418 aa17.65■□□□□ 0.42
USP28-208ENST00000540438 CAV1Q03135 178 aa17.65■□□□□ 0.42
USP28-208ENST00000540438 CES3Q6UWW8 571 aa17.65■□□□□ 0.42
USP28-208ENST00000540438 ARHGEF18Q6ZSZ5 1173 aa17.65■□□□□ 0.42
USP28-208ENST00000540438 SPATS2Q86XZ4 545 aaKnown RBP17.65■□□□□ 0.42
USP28-208ENST00000540438 MPP5Q8N3R9 675 aa17.65■□□□□ 0.42
USP28-208ENST00000540438 GPATCH11Q8N954 259 aa17.65■□□□□ 0.42
USP28-208ENST00000540438 NPLOC4Q8TAT6 608 aa17.65■□□□□ 0.42
USP28-208ENST00000540438 PTPRN2Q92932 1015 aa17.65■□□□□ 0.42
USP28-208ENST00000540438 PCDH9Q9HC56 1237 aa17.65■□□□□ 0.42
USP28-208ENST00000540438 HAO1Q9UJM8 370 aa17.65■□□□□ 0.42
USP28-208ENST00000540438 PAPSS1O43252 624 aaPredicted RBP17.64■□□□□ 0.41
USP28-208ENST00000540438 SUN1O94901 812 aa17.64■□□□□ 0.41
USP28-208ENST00000540438 KRT16P08779 473 aa17.64■□□□□ 0.41
USP28-208ENST00000540438 NDUFV1P49821 464 aa17.64■□□□□ 0.41
USP28-208ENST00000540438 ROR1Q01973 937 aa17.64■□□□□ 0.41
USP28-208ENST00000540438 LMNB2Q03252 620 aa17.64■□□□□ 0.41
USP28-208ENST00000540438 FAAP100Q0VG06 881 aa17.64■□□□□ 0.41
USP28-208ENST00000540438 BBS12Q6ZW61 710 aa17.64■□□□□ 0.41
USP28-208ENST00000540438 CYP4V2Q6ZWL3 525 aaPredicted RBP17.64■□□□□ 0.41
USP28-208ENST00000540438 YTHDF3Q7Z739 585 aaKnown RBP17.64■□□□□ 0.41
USP28-208ENST00000540438 LRRC6Q86X45 466 aa17.64■□□□□ 0.41
USP28-208ENST00000540438 KLHL29Q96CT2 875 aa17.64■□□□□ 0.41
USP28-208ENST00000540438 SNRNP25Q9BV90 132 aaKnown RBP17.64■□□□□ 0.41
USP28-208ENST00000540438 DDX56Q9NY93 547 aaKnown RBP17.64■□□□□ 0.41
USP28-208ENST00000540438 BARX2Q9UMQ3 279 aaPredicted RBP17.64■□□□□ 0.41
USP28-208ENST00000540438 NUMBLQ9Y6R0 609 aa17.64■□□□□ 0.41
USP28-208ENST00000540438 ITGAVP06756 1048 aa17.64■□□□□ 0.41
USP28-208ENST00000540438 ABCD1P33897 745 aa17.64■□□□□ 0.41
USP28-208ENST00000540438 ARL4CP56559 192 aa17.64■□□□□ 0.41
USP28-208ENST00000540438 PPIL2Q13356 520 aa17.64■□□□□ 0.41
USP28-208ENST00000540438 MORF4L2Q15014 288 aa17.64■□□□□ 0.41
USP28-208ENST00000540438 CCL14Q16627 93 aa17.64■□□□□ 0.41
USP28-208ENST00000540438 PPIL6Q8IXY8 311 aa17.64■□□□□ 0.41
USP28-208ENST00000540438 RNF169Q8NCN4 708 aa17.64■□□□□ 0.41
USP28-208ENST00000540438 PCDH19Q8TAB3 1148 aa17.64■□□□□ 0.41
USP28-208ENST00000540438 PRR11Q96HE9 360 aaPredicted RBP17.64■□□□□ 0.41
USP28-208ENST00000540438 BRCA1P38398 1863 aaKnown RBP17.64■□□□□ 0.41
USP28-208ENST00000540438 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP17.64■□□□□ 0.41
USP28-208ENST00000540438 A0A0G2JND7 137 aa17.64■□□□□ 0.41
USP28-208ENST00000540438 ALOX15BO15296 676 aa17.64■□□□□ 0.41
USP28-208ENST00000540438 RECQL4O94761 1208 aa17.64■□□□□ 0.41
USP28-208ENST00000540438 KITP10721 976 aa17.64■□□□□ 0.41
USP28-208ENST00000540438 HOXA11P31270 313 aaPredicted RBP17.64■□□□□ 0.41
USP28-208ENST00000540438 BCAR1P56945 870 aa17.64■□□□□ 0.41
USP28-208ENST00000540438 ELF3P78545 371 aaPredicted RBP17.64■□□□□ 0.41
USP28-208ENST00000540438 RBP5P82980 135 aa17.64■□□□□ 0.41
USP28-208ENST00000540438 IL9RQ01113 521 aa17.64■□□□□ 0.41
USP28-208ENST00000540438 SNAPC2Q13487 334 aa17.64■□□□□ 0.41
USP28-208ENST00000540438 SOWAHAQ2M3V2 549 aa17.64■□□□□ 0.41
USP28-208ENST00000540438 NAT8LQ8N9F0 302 aa17.64■□□□□ 0.41
USP28-208ENST00000540438 BBOF1Q8ND07 529 aa17.64■□□□□ 0.41
USP28-208ENST00000540438 KCNV2Q8TDN2 545 aa17.64■□□□□ 0.41
USP28-208ENST00000540438 NKD2Q969F2 451 aaPredicted RBP17.64■□□□□ 0.41
USP28-208ENST00000540438 SERAC1Q96JX3 654 aa17.64■□□□□ 0.41
USP28-208ENST00000540438 FAM111AQ96PZ2 611 aa17.64■□□□□ 0.41
USP28-208ENST00000540438 MARCOQ9UEW3 520 aaPredicted RBP17.64■□□□□ 0.41
USP28-208ENST00000540438 C2CD4BA6NLJ0 364 aa17.63■□□□□ 0.41
USP28-208ENST00000540438 AMPD1P23109 780 aa17.63■□□□□ 0.41
USP28-208ENST00000540438 IL4RP24394 825 aa17.63■□□□□ 0.41
USP28-208ENST00000540438 ATP5DP30049 168 aa17.63■□□□□ 0.41
USP28-208ENST00000540438 MSH2P43246 934 aa17.63■□□□□ 0.41
USP28-208ENST00000540438 NCALDP61601 193 aa17.63■□□□□ 0.41
USP28-208ENST00000540438 SURF1Q15526 300 aa17.63■□□□□ 0.41
USP28-208ENST00000540438 ACCSLQ4AC99 568 aa17.63■□□□□ 0.41
USP28-208ENST00000540438 MDH1BQ5I0G3 518 aa17.63■□□□□ 0.41
USP28-208ENST00000540438 HACE1Q8IYU2 909 aa17.63■□□□□ 0.41
USP28-208ENST00000540438 PDIK1LQ8N165 341 aa17.63■□□□□ 0.41
USP28-208ENST00000540438 CCDC185Q8N715 623 aa17.63■□□□□ 0.41
USP28-208ENST00000540438 BRI3BPQ8WY22 251 aa17.63■□□□□ 0.41
USP28-208ENST00000540438 SYT17Q9BSW7 474 aa17.63■□□□□ 0.41
USP28-208ENST00000540438 ZNF518BQ9C0D4 1074 aa17.63■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms