RNA–Protein interactions for RNA: ENST00000530983.5

VPS28-213, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,337 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-213ENST00000530983 TRNP1Q6NT89 227 aa20.09■□□□□ 0.81
VPS28-213ENST00000530983 TTC8Q8TAM2 541 aa20.09■□□□□ 0.81
VPS28-213ENST00000530983 TRAPPC12Q8WVT3 735 aa20.09■□□□□ 0.81
VPS28-213ENST00000530983 FAM111AQ96PZ2 611 aa20.09■□□□□ 0.81
VPS28-213ENST00000530983 GPR20Q99678 358 aa20.09■□□□□ 0.81
VPS28-213ENST00000530983 INO80BQ9C086 356 aaPredicted RBP20.09■□□□□ 0.81
VPS28-213ENST00000530983 STAU2Q9NUL3 570 aaKnown RBP eCLIP20.09■□□□□ 0.81
VPS28-213ENST00000530983 HEY2Q9UBP5 337 aa20.09■□□□□ 0.81
VPS28-213ENST00000530983 CORO1CQ9ULV4 474 aaPredicted RBP20.09■□□□□ 0.81
VPS28-213ENST00000530983 M0QYV0 167 aa20.08■□□□□ 0.81
VPS28-213ENST00000530983 ENTPD5O75356 428 aa20.08■□□□□ 0.81
VPS28-213ENST00000530983 PCK1P35558 622 aa20.08■□□□□ 0.81
VPS28-213ENST00000530983 BAG6P46379 1132 aa20.08■□□□□ 0.81
VPS28-213ENST00000530983 BLMHQ13867 455 aa20.08■□□□□ 0.81
VPS28-213ENST00000530983 PRKD1Q15139 912 aaPredicted RBP20.08■□□□□ 0.81
VPS28-213ENST00000530983 FAM102AQ5T9C2 384 aaPredicted RBP20.08■□□□□ 0.81
VPS28-213ENST00000530983 MINDY3Q9H8M7 445 aa20.08■□□□□ 0.81
VPS28-213ENST00000530983 ASNSD1Q9NWL6 643 aa20.08■□□□□ 0.81
VPS28-213ENST00000530983 E7ENQ6 273 aa20.08■□□□□ 0.8
VPS28-213ENST00000530983 LIN7AO14910 233 aaPredicted RBP20.08■□□□□ 0.8
VPS28-213ENST00000530983 HNRNPCL1O60812 293 aaKnown RBP20.08■□□□□ 0.8
VPS28-213ENST00000530983 ZNF143P52747 638 aaPredicted RBP20.08■□□□□ 0.8
VPS28-213ENST00000530983 CDH6P55285 790 aa20.08■□□□□ 0.8
VPS28-213ENST00000530983 YWHAGP61981 247 aaKnown RBP eCLIP20.08■□□□□ 0.8
VPS28-213ENST00000530983 TAF11Q15544 211 aa20.08■□□□□ 0.8
VPS28-213ENST00000530983 SH3D19Q5HYK7 790 aa20.08■□□□□ 0.8
VPS28-213ENST00000530983 CXorf38Q8TB03 319 aa20.08■□□□□ 0.8
VPS28-213ENST00000530983 ZBTB10Q96DT7 871 aa20.08■□□□□ 0.8
VPS28-213ENST00000530983 PTCD3Q96EY7 689 aaKnown RBP20.08■□□□□ 0.8
VPS28-213ENST00000530983 TMEM176AQ96HP8 235 aa20.08■□□□□ 0.8
VPS28-213ENST00000530983 ANKRD27Q96NW4 1050 aa20.08■□□□□ 0.8
VPS28-213ENST00000530983 ADPGKQ9BRR6 497 aa20.08■□□□□ 0.8
VPS28-213ENST00000530983 RPF1Q9H9Y2 349 aaKnown RBP20.08■□□□□ 0.8
VPS28-213ENST00000530983 ARL8BQ9NVJ2 186 aa20.08■□□□□ 0.8
VPS28-213ENST00000530983 IKBKGQ9Y6K9 419 aa20.08■□□□□ 0.8
VPS28-213ENST00000530983 EVPLQ92817 2033 aa20.07■□□□□ 0.8
VPS28-213ENST00000530983 KAT6AQ92794 2004 aa20.07■□□□□ 0.8
VPS28-213ENST00000530983 C1QAP02745 245 aa20.07■□□□□ 0.8
VPS28-213ENST00000530983 ITGB3P05106 788 aa20.07■□□□□ 0.8
VPS28-213ENST00000530983 INHBAP08476 426 aa20.07■□□□□ 0.8
VPS28-213ENST00000530983 IQCF3P0C7M6 154 aa20.07■□□□□ 0.8
VPS28-213ENST00000530983 PYGBP11216 843 aa20.07■□□□□ 0.8
VPS28-213ENST00000530983 TMEM132AQ24JP5 1023 aa20.07■□□□□ 0.8
VPS28-213ENST00000530983 NOL9Q5SY16 702 aaKnown RBP20.07■□□□□ 0.8
VPS28-213ENST00000530983 PRPF39Q86UA1 669 aaKnown RBP20.07■□□□□ 0.8
VPS28-213ENST00000530983 RIOX2Q8IUF8 465 aa20.07■□□□□ 0.8
VPS28-213ENST00000530983 CADM1Q9BY67 442 aaKnown RBP20.07■□□□□ 0.8
VPS28-213ENST00000530983 ASCC2Q9H1I8 757 aaPredicted RBP20.07■□□□□ 0.8
VPS28-213ENST00000530983 CNTN3Q9P232 1028 aa20.07■□□□□ 0.8
VPS28-213ENST00000530983 RPL26L1Q9UNX3 145 aaKnown RBP20.07■□□□□ 0.8
VPS28-213ENST00000530983 BRCA1P38398 1863 aaKnown RBP20.07■□□□□ 0.8
VPS28-213ENST00000530983 LGR5O75473 907 aa20.07■□□□□ 0.8
VPS28-213ENST00000530983 HAUS5O94927 633 aa20.07■□□□□ 0.8
VPS28-213ENST00000530983 IL18RAPO95256 599 aa20.07■□□□□ 0.8
VPS28-213ENST00000530983 DLDP09622 509 aaKnown RBP20.07■□□□□ 0.8
VPS28-213ENST00000530983 BGNP21810 368 aa20.07■□□□□ 0.8
VPS28-213ENST00000530983 ARFIP2P53365 341 aa20.07■□□□□ 0.8
VPS28-213ENST00000530983 MBTD1Q05BQ5 628 aa20.07■□□□□ 0.8
VPS28-213ENST00000530983 APOBEC3FQ8IUX4 373 aaKnown RBP20.07■□□□□ 0.8
VPS28-213ENST00000530983 TTC17Q96AE7 1141 aa20.07■□□□□ 0.8
VPS28-213ENST00000530983 SKA1Q96BD8 255 aa20.07■□□□□ 0.8
VPS28-213ENST00000530983 PRR11Q96HE9 360 aaPredicted RBP20.07■□□□□ 0.8
VPS28-213ENST00000530983 NAF1Q96HR8 494 aaKnown RBP20.07■□□□□ 0.8
VPS28-213ENST00000530983 PIWIL1Q96J94 861 aaKnown RBP20.07■□□□□ 0.8
VPS28-213ENST00000530983 FAM167BQ9BTA0 163 aa20.07■□□□□ 0.8
VPS28-213ENST00000530983 TMEM120AQ9BXJ8 343 aa20.07■□□□□ 0.8
VPS28-213ENST00000530983 USP29Q9HBJ7 922 aa20.07■□□□□ 0.8
VPS28-213ENST00000530983 LRRC42Q9Y546 428 aa20.07■□□□□ 0.8
VPS28-213ENST00000530983 CFAP69A5D8W1 941 aa20.06■□□□□ 0.8
VPS28-213ENST00000530983 CHADO15335 359 aa20.06■□□□□ 0.8
VPS28-213ENST00000530983 DNAJC6O75061 913 aa20.06■□□□□ 0.8
VPS28-213ENST00000530983 TGDSO95455 350 aa20.06■□□□□ 0.8
VPS28-213ENST00000530983 CALRP27797 417 aaKnown RBP20.06■□□□□ 0.8
VPS28-213ENST00000530983 SERPINB3P29508 390 aa20.06■□□□□ 0.8
VPS28-213ENST00000530983 PRKG1Q13976 671 aa20.06■□□□□ 0.8
VPS28-213ENST00000530983 C15orf59Q2T9L4 293 aaPredicted RBP20.06■□□□□ 0.8
VPS28-213ENST00000530983 RFWD3Q6PCD5 774 aa20.06■□□□□ 0.8
VPS28-213ENST00000530983 UBA3Q8TBC4 463 aa20.06■□□□□ 0.8
VPS28-213ENST00000530983 SH3TC2Q8TF17 1288 aa20.06■□□□□ 0.8
VPS28-213ENST00000530983 FBXO6Q9NRD1 293 aaPredicted RBP20.06■□□□□ 0.8
VPS28-213ENST00000530983 C2CD4BA6NLJ0 364 aa20.05■□□□□ 0.8
VPS28-213ENST00000530983 LACTBL1A8MY62 500 aa20.05■□□□□ 0.8
VPS28-213ENST00000530983 H0Y3Z8 333 aa20.05■□□□□ 0.8
VPS28-213ENST00000530983 GPR25O00155 361 aa20.05■□□□□ 0.8
VPS28-213ENST00000530983 CCDC22O60826 627 aa20.05■□□□□ 0.8
VPS28-213ENST00000530983 SPAG6O75602 509 aa20.05■□□□□ 0.8
VPS28-213ENST00000530983 FAM155BO75949 473 aa20.05■□□□□ 0.8
VPS28-213ENST00000530983 GPD1P21695 349 aa20.05■□□□□ 0.8
VPS28-213ENST00000530983 JADE1Q6IE81 842 aa20.05■□□□□ 0.8
VPS28-213ENST00000530983 NCAPG2Q86XI2 1143 aa20.05■□□□□ 0.8
VPS28-213ENST00000530983 FAF2Q96CS3 445 aa20.05■□□□□ 0.8
VPS28-213ENST00000530983 CNPY3Q9BT09 278 aa20.05■□□□□ 0.8
VPS28-213ENST00000530983 R3HDMLQ9H3Y0 253 aa20.05■□□□□ 0.8
VPS28-213ENST00000530983 PNPLA8Q9NP80 782 aa20.05■□□□□ 0.8
VPS28-213ENST00000530983 TNFSF13BQ9Y275 285 aa20.05■□□□□ 0.8
VPS28-213ENST00000530983 H7C0C1 242 aa20.05■□□□□ 0.8
VPS28-213ENST00000530983 PIK3R2O00459 728 aa20.05■□□□□ 0.8
VPS28-213ENST00000530983 HMGCRP04035 888 aa20.05■□□□□ 0.8
VPS28-213ENST00000530983 ATP5OP48047 213 aa20.05■□□□□ 0.8
VPS28-213ENST00000530983 GCLCP48506 637 aaPredicted RBP20.05■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms