RNA–Protein interactions for RNA: ENST00000493475.2

COL6A3-213, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 669 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-213ENST00000493475 CFAP97Q9P2B7 532 aa12.3□□□□□ -0.44
COL6A3-213ENST00000493475 MMP17Q9ULZ9 603 aa12.3□□□□□ -0.44
COL6A3-213ENST00000493475 ZNF638Q14966 1978 aaKnown RBP12.29□□□□□ -0.44
COL6A3-213ENST00000493475 BCLAF3A2AJT9 711 aaKnown RBP12.29□□□□□ -0.44
COL6A3-213ENST00000493475 CLIC2O15247 247 aa12.29□□□□□ -0.44
COL6A3-213ENST00000493475 POLR2DO15514 142 aaKnown RBP12.29□□□□□ -0.44
COL6A3-213ENST00000493475 KAT7O95251 611 aa12.29□□□□□ -0.44
COL6A3-213ENST00000493475 RPN1P04843 607 aaKnown RBP12.29□□□□□ -0.44
COL6A3-213ENST00000493475 GRIA2P42262 883 aa12.29□□□□□ -0.44
COL6A3-213ENST00000493475 TNFRSF4P43489 277 aa12.29□□□□□ -0.44
COL6A3-213ENST00000493475 E2F5Q15329 346 aa12.29□□□□□ -0.44
COL6A3-213ENST00000493475 DHCR24Q15392 516 aa12.29□□□□□ -0.44
COL6A3-213ENST00000493475 CCDC6Q16204 474 aa12.29□□□□□ -0.44
COL6A3-213ENST00000493475 E2F4Q16254 413 aa12.29□□□□□ -0.44
COL6A3-213ENST00000493475 CRY1Q16526 586 aa12.29□□□□□ -0.44
COL6A3-213ENST00000493475 HECTD3Q5T447 861 aa12.29□□□□□ -0.44
COL6A3-213ENST00000493475 SDE2Q6IQ49 451 aa12.29□□□□□ -0.44
COL6A3-213ENST00000493475 RABEPKQ7Z6M1 372 aa12.29□□□□□ -0.44
COL6A3-213ENST00000493475 TADA2BQ86TJ2 420 aa12.29□□□□□ -0.44
COL6A3-213ENST00000493475 PGBD3Q8N328 593 aa12.29□□□□□ -0.44
COL6A3-213ENST00000493475 TAF4BQ92750 862 aa12.29□□□□□ -0.44
COL6A3-213ENST00000493475 CCDC34Q96HJ3 373 aa12.29□□□□□ -0.44
COL6A3-213ENST00000493475 DUSP15Q9H1R2 295 aaPredicted RBP12.29□□□□□ -0.44
COL6A3-213ENST00000493475 LINC00597Q9H2U6 94 aa12.29□□□□□ -0.44
COL6A3-213ENST00000493475 ARHGEF4Q9NR80 690 aa12.29□□□□□ -0.44
COL6A3-213ENST00000493475 LSM7Q9UK45 103 aaKnown RBP12.29□□□□□ -0.44
COL6A3-213ENST00000493475 FRMD4BQ9Y2L6 1034 aa12.29□□□□□ -0.44
COL6A3-213ENST00000493475 PTPRJQ12913 1337 aa12.29□□□□□ -0.44
COL6A3-213ENST00000493475 CACNA1BQ00975 2339 aa12.28□□□□□ -0.44
COL6A3-213ENST00000493475 KIF26AQ9ULI4 1882 aaPredicted RBP12.28□□□□□ -0.44
COL6A3-213ENST00000493475 TBC1D3BA6NDS4 549 aa12.28□□□□□ -0.44
COL6A3-213ENST00000493475 TGFB1I1O43294 461 aa12.28□□□□□ -0.44
COL6A3-213ENST00000493475 HCRTO43612 131 aa12.28□□□□□ -0.44
COL6A3-213ENST00000493475 OLFM2O95897 454 aa12.28□□□□□ -0.44
COL6A3-213ENST00000493475 OAS1P00973 400 aaKnown RBP12.28□□□□□ -0.44
COL6A3-213ENST00000493475 CST3P01034 146 aaPredicted RBP12.28□□□□□ -0.44
COL6A3-213ENST00000493475 CYP17A1P05093 508 aa12.28□□□□□ -0.44
COL6A3-213ENST00000493475 MYL1P05976 194 aa12.28□□□□□ -0.44
COL6A3-213ENST00000493475 RDXP35241 583 aaKnown RBP12.28□□□□□ -0.44
COL6A3-213ENST00000493475 DHPSP49366 369 aaPredicted RBP12.28□□□□□ -0.44
COL6A3-213ENST00000493475 MYL6P60660 151 aa12.28□□□□□ -0.44
COL6A3-213ENST00000493475 USP46P62068 366 aa12.28□□□□□ -0.44
COL6A3-213ENST00000493475 NCOA4Q13772 614 aa12.28□□□□□ -0.44
COL6A3-213ENST00000493475 BMT2Q1RMZ1 405 aa12.28□□□□□ -0.44
COL6A3-213ENST00000493475 SGSM1Q2NKQ1 1148 aa12.28□□□□□ -0.44
COL6A3-213ENST00000493475 SPDYCQ5MJ68 293 aa12.28□□□□□ -0.44
COL6A3-213ENST00000493475 PMS2CLQ68D20 193 aa12.28□□□□□ -0.44
COL6A3-213ENST00000493475 RASSF3Q86WH2 238 aa12.28□□□□□ -0.44
COL6A3-213ENST00000493475 ADGRG2Q8IZP9 1017 aa12.28□□□□□ -0.44
COL6A3-213ENST00000493475 RIN3Q8TB24 985 aa12.28□□□□□ -0.44
COL6A3-213ENST00000493475 SCFD1Q8WVM8 642 aa12.28□□□□□ -0.44
COL6A3-213ENST00000493475 HPS3Q969F9 1004 aa12.28□□□□□ -0.44
COL6A3-213ENST00000493475 LSM14BQ9BX40 385 aaKnown RBP12.28□□□□□ -0.44
COL6A3-213ENST00000493475 NUSAP1Q9BXS6 441 aaKnown RBP12.28□□□□□ -0.44
COL6A3-213ENST00000493475 VRTNQ9H8Y1 702 aa12.28□□□□□ -0.44
COL6A3-213ENST00000493475 SLC39A2Q9NP94 309 aa12.28□□□□□ -0.44
COL6A3-213ENST00000493475 TMEM9BQ9NQ34 198 aa12.28□□□□□ -0.44
COL6A3-213ENST00000493475 UTP3Q9NQZ2 479 aaKnown RBP eCLIP12.28□□□□□ -0.44
COL6A3-213ENST00000493475 TLR8Q9NR97 1041 aaKnown RBP12.28□□□□□ -0.44
COL6A3-213ENST00000493475 DEC1Q9P2X7 70 aa12.28□□□□□ -0.44
COL6A3-213ENST00000493475 USP25Q9UHP3 1055 aa12.28□□□□□ -0.44
COL6A3-213ENST00000493475 KLF8O95600 359 aaPredicted RBP12.27□□□□□ -0.45
COL6A3-213ENST00000493475 OPRD1P41143 372 aa12.27□□□□□ -0.45
COL6A3-213ENST00000493475 NOVA1P51513 510 aaKnown RBP12.27□□□□□ -0.45
COL6A3-213ENST00000493475 SLC5A3P53794 718 aa12.27□□□□□ -0.45
COL6A3-213ENST00000493475 ATXN3P54252 364 aaPredicted RBP12.27□□□□□ -0.45
COL6A3-213ENST00000493475 CCDC142Q17RM4 750 aa12.27□□□□□ -0.45
COL6A3-213ENST00000493475 SHC4Q6S5L8 630 aa12.27□□□□□ -0.45
COL6A3-213ENST00000493475 FAM35AQ86V20 835 aa12.27□□□□□ -0.45
COL6A3-213ENST00000493475 CCDC33Q8N5R6 958 aa12.27□□□□□ -0.45
COL6A3-213ENST00000493475 TXNDC5Q8NBS9 432 aaKnown RBP12.27□□□□□ -0.45
COL6A3-213ENST00000493475 GLIS3Q8NEA6 775 aa12.27□□□□□ -0.45
COL6A3-213ENST00000493475 FAM84AQ96KN4 292 aa12.27□□□□□ -0.45
COL6A3-213ENST00000493475 XPO6Q96QU8 1125 aaKnown RBP12.27□□□□□ -0.45
COL6A3-213ENST00000493475 DUSP9Q99956 384 aaKnown RBP12.27□□□□□ -0.45
COL6A3-213ENST00000493475 TPSD1Q9BZJ3 242 aa12.27□□□□□ -0.45
COL6A3-213ENST00000493475 ZNF518BQ9C0D4 1074 aa12.27□□□□□ -0.45
COL6A3-213ENST00000493475 SLC32A1Q9H598 525 aa12.27□□□□□ -0.45
COL6A3-213ENST00000493475 CHD8Q9HCK8 2581 aa12.27□□□□□ -0.45
COL6A3-213ENST00000493475 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.26□□□□□ -0.45
COL6A3-213ENST00000493475 K7EQS6 105 aa12.26□□□□□ -0.45
COL6A3-213ENST00000493475 TNFRSF10BO14763 440 aa12.26□□□□□ -0.45
COL6A3-213ENST00000493475 AP5Z1O43299 807 aa12.26□□□□□ -0.45
COL6A3-213ENST00000493475 CALUO43852 315 aaPredicted RBP12.26□□□□□ -0.45
COL6A3-213ENST00000493475 AP1G2O75843 785 aa12.26□□□□□ -0.45
COL6A3-213ENST00000493475 KCNK5O95279 499 aa12.26□□□□□ -0.45
COL6A3-213ENST00000493475 ZSCAN22P10073 491 aaPredicted RBP12.26□□□□□ -0.45
COL6A3-213ENST00000493475 HOXD12P35452 270 aa12.26□□□□□ -0.45
COL6A3-213ENST00000493475 AFMP43652 599 aa12.26□□□□□ -0.45
COL6A3-213ENST00000493475 SHC2P98077 582 aa12.26□□□□□ -0.45
COL6A3-213ENST00000493475 ANO4Q32M45 955 aa12.26□□□□□ -0.45
COL6A3-213ENST00000493475 SNX30Q5VWJ9 437 aa12.26□□□□□ -0.45
COL6A3-213ENST00000493475 PSAPL1Q6NUJ1 521 aa12.26□□□□□ -0.45
COL6A3-213ENST00000493475 SLC36A4Q6YBV0 504 aa12.26□□□□□ -0.45
COL6A3-213ENST00000493475 UNC93AQ86WB7 457 aa12.26□□□□□ -0.45
COL6A3-213ENST00000493475 ALLCQ8N6M5 410 aa12.26□□□□□ -0.45
COL6A3-213ENST00000493475 MDGA1Q8NFP4 955 aa12.26□□□□□ -0.45
COL6A3-213ENST00000493475 CDK5RAP1Q96SZ6 601 aaKnown RBP12.26□□□□□ -0.45
COL6A3-213ENST00000493475 B3GNT5Q9BYG0 378 aa12.26□□□□□ -0.45
COL6A3-213ENST00000493475 RNF38Q9H0F5 515 aa12.26□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms