RNA–Protein interactions for RNA: ENST00000487215.1

SMPDL3A-202, Transcript of sphingomyelin phosphodiesterase acid like 3A, humanhuman

TSL 2

Gene SMPDL3A, Length 903 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPDL3A-202ENST00000487215 ZZEF1O43149 2961 aa20.69■□□□□ 0.9
SMPDL3A-202ENST00000487215 PTPN1P18031 435 aaKnown RBP20.69■□□□□ 0.9
SMPDL3A-202ENST00000487215 HOXD13P35453 343 aa20.69■□□□□ 0.9
SMPDL3A-202ENST00000487215 TNFRSF4P43489 277 aa20.69■□□□□ 0.9
SMPDL3A-202ENST00000487215 SPDYCQ5MJ68 293 aa20.69■□□□□ 0.9
SMPDL3A-202ENST00000487215 LY6G5CQ5SRR4 150 aa20.69■□□□□ 0.9
SMPDL3A-202ENST00000487215 SLC23A3Q6PIS1 610 aa20.69■□□□□ 0.9
SMPDL3A-202ENST00000487215 STXBP4Q6ZWJ1 553 aa20.69■□□□□ 0.9
SMPDL3A-202ENST00000487215 PGBD3Q8N328 593 aa20.69■□□□□ 0.9
SMPDL3A-202ENST00000487215 ZFRQ96KR1 1074 aaKnown RBP20.69■□□□□ 0.9
SMPDL3A-202ENST00000487215 SLC32A1Q9H598 525 aa20.69■□□□□ 0.9
SMPDL3A-202ENST00000487215 KIAA1586Q9HCI6 787 aa20.69■□□□□ 0.9
SMPDL3A-202ENST00000487215 TBC1D14Q9P2M4 693 aa20.69■□□□□ 0.9
SMPDL3A-202ENST00000487215 PILRBQ9UKJ0 227 aa20.69■□□□□ 0.9
SMPDL3A-202ENST00000487215 FAM208BQ5VWN6 2430 aa20.69■□□□□ 0.9
SMPDL3A-202ENST00000487215 E2F8A0AVK6 867 aa20.68■□□□□ 0.9
SMPDL3A-202ENST00000487215 CLDN5O00501 218 aa20.68■□□□□ 0.9
SMPDL3A-202ENST00000487215 HYAL3O43820 417 aaPredicted RBP20.68■□□□□ 0.9
SMPDL3A-202ENST00000487215 DLATP10515 647 aaKnown RBP20.68■□□□□ 0.9
SMPDL3A-202ENST00000487215 ITPKAP23677 461 aa20.68■□□□□ 0.9
SMPDL3A-202ENST00000487215 DPP6P42658 865 aa20.68■□□□□ 0.9
SMPDL3A-202ENST00000487215 BYSLQ13895 437 aaKnown RBP20.68■□□□□ 0.9
SMPDL3A-202ENST00000487215 PEAR1Q5VY43 1037 aaPredicted RBP20.68■□□□□ 0.9
SMPDL3A-202ENST00000487215 ETFBKMTQ8IXQ9 262 aa20.68■□□□□ 0.9
SMPDL3A-202ENST00000487215 B3GNT5Q9BYG0 378 aa20.68■□□□□ 0.9
SMPDL3A-202ENST00000487215 FSCN3Q9NQT6 498 aa20.68■□□□□ 0.9
SMPDL3A-202ENST00000487215 IGF2RP11717 2491 aa20.68■□□□□ 0.9
SMPDL3A-202ENST00000487215 SRRM3A6NNA2 597 aaPredicted RBP20.67■□□□□ 0.9
SMPDL3A-202ENST00000487215 COCHO43405 550 aa20.67■□□□□ 0.9
SMPDL3A-202ENST00000487215 FAM163BP0C2L3 166 aa20.67■□□□□ 0.9
SMPDL3A-202ENST00000487215 YWHAQP27348 245 aa20.67■□□□□ 0.9
SMPDL3A-202ENST00000487215 TNNC1P63316 161 aa20.67■□□□□ 0.9
SMPDL3A-202ENST00000487215 GAD2Q05329 585 aa20.67■□□□□ 0.9
SMPDL3A-202ENST00000487215 SEMA3BQ13214 749 aa20.67■□□□□ 0.9
SMPDL3A-202ENST00000487215 SNRNP35Q16560 246 aaKnown RBP20.67■□□□□ 0.9
SMPDL3A-202ENST00000487215 WDR72Q3MJ13 1102 aa20.67■□□□□ 0.9
SMPDL3A-202ENST00000487215 PIP4P1Q86T03 277 aa20.67■□□□□ 0.9
SMPDL3A-202ENST00000487215 NUP93Q8N1F7 819 aa20.67■□□□□ 0.9
SMPDL3A-202ENST00000487215 PDILTQ8N807 584 aa20.67■□□□□ 0.9
SMPDL3A-202ENST00000487215 NAT16Q8N8M0 369 aa20.67■□□□□ 0.9
SMPDL3A-202ENST00000487215 RDH13Q8NBN7 331 aa20.67■□□□□ 0.9
SMPDL3A-202ENST00000487215 PDZD8Q8NEN9 1154 aa20.67■□□□□ 0.9
SMPDL3A-202ENST00000487215 ZCCHC14Q8WYQ9 949 aaKnown RBP20.67■□□□□ 0.9
SMPDL3A-202ENST00000487215 FBXO32Q969P5 355 aa20.67■□□□□ 0.9
SMPDL3A-202ENST00000487215 CGRRF1Q99675 332 aa20.67■□□□□ 0.9
SMPDL3A-202ENST00000487215 NEUROG3Q9Y4Z2 214 aa20.67■□□□□ 0.9
SMPDL3A-202ENST00000487215 PLXND1Q9Y4D7 1925 aa20.66■□□□□ 0.9
SMPDL3A-202ENST00000487215 SPAARA0A1B0GVQ0 90 aa20.66■□□□□ 0.9
SMPDL3A-202ENST00000487215 TBC1D3BA6NDS4 549 aa20.66■□□□□ 0.9
SMPDL3A-202ENST00000487215 A8MXQ7 604 aa20.66■□□□□ 0.9
SMPDL3A-202ENST00000487215 HOXC11O43248 304 aaPredicted RBP20.66■□□□□ 0.9
SMPDL3A-202ENST00000487215 CFIP05156 583 aa20.66■□□□□ 0.9
SMPDL3A-202ENST00000487215 HOXB3P14651 431 aaPredicted RBP20.66■□□□□ 0.9
SMPDL3A-202ENST00000487215 TNNI1P19237 187 aa20.66■□□□□ 0.9
SMPDL3A-202ENST00000487215 PDCP20941 246 aa20.66■□□□□ 0.9
SMPDL3A-202ENST00000487215 HOXD12P35452 270 aa20.66■□□□□ 0.9
SMPDL3A-202ENST00000487215 ZNF513Q8N8E2 541 aaPredicted RBP20.66■□□□□ 0.9
SMPDL3A-202ENST00000487215 B3GALNT2Q8NCR0 500 aa20.66■□□□□ 0.9
SMPDL3A-202ENST00000487215 OVCA2Q8WZ82 227 aa20.66■□□□□ 0.9
SMPDL3A-202ENST00000487215 OTUB2Q96DC9 234 aa20.66■□□□□ 0.9
SMPDL3A-202ENST00000487215 MORC2Q9Y6X9 1032 aaPredicted RBP20.66■□□□□ 0.9
SMPDL3A-202ENST00000487215 CACNA1GO43497 2377 aa20.66■□□□□ 0.9
SMPDL3A-202ENST00000487215 UPK3BL1B0FP48 263 aa20.65■□□□□ 0.9
SMPDL3A-202ENST00000487215 UPK3BL2E5RIL1 263 aa20.65■□□□□ 0.9
SMPDL3A-202ENST00000487215 EIF3DO15371 548 aaKnown RBP eCLIP20.65■□□□□ 0.9
SMPDL3A-202ENST00000487215 TGFB1I1O43294 461 aa20.65■□□□□ 0.9
SMPDL3A-202ENST00000487215 AP5Z1O43299 807 aa20.65■□□□□ 0.9
SMPDL3A-202ENST00000487215 TULP3O75386 442 aa20.65■□□□□ 0.9
SMPDL3A-202ENST00000487215 RTN3O95197 1032 aaPredicted RBP20.65■□□□□ 0.9
SMPDL3A-202ENST00000487215 GABRG2P18507 467 aa20.65■□□□□ 0.9
SMPDL3A-202ENST00000487215 SIM1P81133 766 aaPredicted RBP20.65■□□□□ 0.9
SMPDL3A-202ENST00000487215 RPL6Q02878 288 aaKnown RBP20.65■□□□□ 0.9
SMPDL3A-202ENST00000487215 CUL4AQ13619 759 aa20.65■□□□□ 0.9
SMPDL3A-202ENST00000487215 PSMD6Q15008 389 aa20.65■□□□□ 0.9
SMPDL3A-202ENST00000487215 HECTD3Q5T447 861 aa20.65■□□□□ 0.9
SMPDL3A-202ENST00000487215 BTBD8Q5XKL5 378 aa20.65■□□□□ 0.9
SMPDL3A-202ENST00000487215 TRMT11Q7Z4G4 463 aaKnown RBP20.65■□□□□ 0.9
SMPDL3A-202ENST00000487215 BBS7Q8IWZ6 715 aa20.65■□□□□ 0.9
SMPDL3A-202ENST00000487215 DEFB119Q8N690 84 aa20.65■□□□□ 0.9
SMPDL3A-202ENST00000487215 KCNV2Q8TDN2 545 aa20.65■□□□□ 0.9
SMPDL3A-202ENST00000487215 CCDC127Q96BQ5 260 aa20.65■□□□□ 0.9
SMPDL3A-202ENST00000487215 USP28Q96RU2 1077 aa20.65■□□□□ 0.9
SMPDL3A-202ENST00000487215 KCNK16Q96T55 309 aa20.65■□□□□ 0.9
SMPDL3A-202ENST00000487215 GTPBP2Q9BX10 602 aaKnown RBP20.65■□□□□ 0.9
SMPDL3A-202ENST00000487215 TNMDQ9H2S6 317 aa20.65■□□□□ 0.9
SMPDL3A-202ENST00000487215 AGPAT3Q9NRZ7 376 aa20.65■□□□□ 0.9
SMPDL3A-202ENST00000487215 DEC1Q9P2X7 70 aa20.65■□□□□ 0.9
SMPDL3A-202ENST00000487215 CHORDC1Q9UHD1 332 aaPredicted RBP20.65■□□□□ 0.9
SMPDL3A-202ENST00000487215 KLK13Q9UKR3 277 aa20.65■□□□□ 0.9
SMPDL3A-202ENST00000487215 HCN2Q9UL51 889 aa20.65■□□□□ 0.9
SMPDL3A-202ENST00000487215 SLC6A14Q9UN76 642 aa20.65■□□□□ 0.9
SMPDL3A-202ENST00000487215 SH3BP1Q9Y3L3 701 aa20.65■□□□□ 0.9
SMPDL3A-202ENST00000487215 AKAP13Q12802 2813 aa20.64■□□□□ 0.9
SMPDL3A-202ENST00000487215 ASCC3Q8N3C0 2202 aaKnown RBP20.64■□□□□ 0.89
SMPDL3A-202ENST00000487215 STAU1O95793 577 aaKnown RBP20.64■□□□□ 0.89
SMPDL3A-202ENST00000487215 ATXN3P54252 364 aaPredicted RBP20.64■□□□□ 0.89
SMPDL3A-202ENST00000487215 MYL6P60660 151 aa20.64■□□□□ 0.89
SMPDL3A-202ENST00000487215 CYP24A1Q07973 514 aa20.64■□□□□ 0.89
SMPDL3A-202ENST00000487215 COL9A2Q14055 689 aaPredicted RBP20.64■□□□□ 0.89
SMPDL3A-202ENST00000487215 SLC39A14Q15043 492 aa20.64■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 59 ms