RNA–Protein interactions for RNA: ENST00000486641.2

CCDC171-208, Transcript of coiled-coil domain containing 171, humanhuman

TSL 1 (best)

Gene CCDC171, Length 2,322 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC171-208ENST00000486641 SF3B1O75533 1304 aaKnown RBP eCLIP11.08□□□□□ -0.64
CCDC171-208ENST00000486641 GAS7O60861 476 aa11.07□□□□□ -0.64
CCDC171-208ENST00000486641 SNNO75324 88 aaPredicted RBP11.07□□□□□ -0.64
CCDC171-208ENST00000486641 TNFAIP8O95379 198 aa11.07□□□□□ -0.64
CCDC171-208ENST00000486641 ATP5BP06576 529 aaKnown RBP11.07□□□□□ -0.64
CCDC171-208ENST00000486641 POLR2MP0CAP2 368 aa11.07□□□□□ -0.64
CCDC171-208ENST00000486641 SRGAP2CP0DJJ0 459 aa11.07□□□□□ -0.64
CCDC171-208ENST00000486641 SRGAP2BP0DMP2 458 aa11.07□□□□□ -0.64
CCDC171-208ENST00000486641 CDH2P19022 906 aaPredicted RBP11.07□□□□□ -0.64
CCDC171-208ENST00000486641 COPAP53621 1224 aa11.07□□□□□ -0.64
CCDC171-208ENST00000486641 HDAC4P56524 1084 aa11.07□□□□□ -0.64
CCDC171-208ENST00000486641 PSMC5P62195 406 aa11.07□□□□□ -0.64
CCDC171-208ENST00000486641 WASHC5Q12768 1159 aa11.07□□□□□ -0.64
CCDC171-208ENST00000486641 KRT81Q14533 505 aa11.07□□□□□ -0.64
CCDC171-208ENST00000486641 LPIN1Q14693 890 aa11.07□□□□□ -0.64
CCDC171-208ENST00000486641 ZCCHC23Q6ZST2 131 aa11.07□□□□□ -0.64
CCDC171-208ENST00000486641 SV2AQ7L0J3 742 aa11.07□□□□□ -0.64
CCDC171-208ENST00000486641 HAUS6Q7Z4H7 955 aa11.07□□□□□ -0.64
CCDC171-208ENST00000486641 AHI1Q8N157 1196 aa11.07□□□□□ -0.64
CCDC171-208ENST00000486641 PDIK1LQ8N165 341 aa11.07□□□□□ -0.64
CCDC171-208ENST00000486641 FEZF2Q8TBJ5 459 aa11.07□□□□□ -0.64
CCDC171-208ENST00000486641 SENP7Q9BQF6 1050 aa11.07□□□□□ -0.64
CCDC171-208ENST00000486641 SORCS3Q9UPU3 1222 aa11.07□□□□□ -0.64
CCDC171-208ENST00000486641 GTF3C5Q9Y5Q8 519 aaPredicted RBP11.07□□□□□ -0.64
CCDC171-208ENST00000486641 AP4B1Q9Y6B7 739 aa11.07□□□□□ -0.64
CCDC171-208ENST00000486641 AK5Q9Y6K8 562 aa11.07□□□□□ -0.64
CCDC171-208ENST00000486641 ZNF536O15090 1300 aa11.07□□□□□ -0.64
CCDC171-208ENST00000486641 ASTN2O75129 1339 aaPredicted RBP11.07□□□□□ -0.64
CCDC171-208ENST00000486641 MYH9P35579 1960 aaKnown RBP11.07□□□□□ -0.64
CCDC171-208ENST00000486641 KAT6AQ92794 2004 aa11.07□□□□□ -0.64
CCDC171-208ENST00000486641 KBTBD13C9JR72 458 aa11.07□□□□□ -0.64
CCDC171-208ENST00000486641 WEE2P0C1S8 567 aa11.07□□□□□ -0.64
CCDC171-208ENST00000486641 MCCD1P59942 119 aaPredicted RBP11.07□□□□□ -0.64
CCDC171-208ENST00000486641 DYNLT1P63172 113 aa11.07□□□□□ -0.64
CCDC171-208ENST00000486641 UBXN2AP68543 259 aa11.07□□□□□ -0.64
CCDC171-208ENST00000486641 PEX6Q13608 980 aa11.07□□□□□ -0.64
CCDC171-208ENST00000486641 APOFQ13790 326 aa11.07□□□□□ -0.64
CCDC171-208ENST00000486641 BTG3Q14201 252 aaPredicted RBP11.07□□□□□ -0.64
CCDC171-208ENST00000486641 ACAP1Q15027 740 aa11.07□□□□□ -0.64
CCDC171-208ENST00000486641 CNGA3Q16281 694 aa11.07□□□□□ -0.64
CCDC171-208ENST00000486641 TFDP3Q5H9I0 405 aa11.07□□□□□ -0.64
CCDC171-208ENST00000486641 TTC39BQ5VTQ0 682 aaPredicted RBP11.07□□□□□ -0.64
CCDC171-208ENST00000486641 BORAQ6PGQ7 559 aa11.07□□□□□ -0.64
CCDC171-208ENST00000486641 Q6ZNX1 250 aa11.07□□□□□ -0.64
CCDC171-208ENST00000486641 ZNF677Q86XU0 584 aa11.07□□□□□ -0.64
CCDC171-208ENST00000486641 DEFB107AQ8IZN7 70 aa11.07□□□□□ -0.64
CCDC171-208ENST00000486641 FBXW8Q8N3Y1 598 aa11.07□□□□□ -0.64
CCDC171-208ENST00000486641 GFM2Q969S9 779 aaKnown RBP11.07□□□□□ -0.64
CCDC171-208ENST00000486641 MMP19Q99542 508 aa11.07□□□□□ -0.64
CCDC171-208ENST00000486641 Q9H521 79 aa11.07□□□□□ -0.64
CCDC171-208ENST00000486641 LIN28AQ9H9Z2 209 aaKnown RBP11.07□□□□□ -0.64
CCDC171-208ENST00000486641 TBCCD1Q9NVR7 557 aa11.07□□□□□ -0.64
CCDC171-208ENST00000486641 TMOD2Q9NZR1 351 aa11.07□□□□□ -0.64
CCDC171-208ENST00000486641 RAB26Q9ULW5 256 aa11.07□□□□□ -0.64
CCDC171-208ENST00000486641 DAGLAQ9Y4D2 1042 aa11.07□□□□□ -0.64
CCDC171-208ENST00000486641 F8VP50 259 aa11.06□□□□□ -0.64
CCDC171-208ENST00000486641 SLC16A4O15374 487 aa11.06□□□□□ -0.64
CCDC171-208ENST00000486641 DKC1O60832 514 aaKnown RBP eCLIP11.06□□□□□ -0.64
CCDC171-208ENST00000486641 ITGAXP20702 1163 aa11.06□□□□□ -0.64
CCDC171-208ENST00000486641 CDKN2BP42772 138 aa11.06□□□□□ -0.64
CCDC171-208ENST00000486641 ECE1P42892 770 aa11.06□□□□□ -0.64
CCDC171-208ENST00000486641 YWHAGP61981 247 aaKnown RBP eCLIP11.06□□□□□ -0.64
CCDC171-208ENST00000486641 GTF2BQ00403 316 aa11.06□□□□□ -0.64
CCDC171-208ENST00000486641 GCNT1Q02742 428 aa11.06□□□□□ -0.64
CCDC171-208ENST00000486641 PQLC1Q8N2U9 271 aa11.06□□□□□ -0.64
CCDC171-208ENST00000486641 DDI1Q8WTU0 396 aa11.06□□□□□ -0.64
CCDC171-208ENST00000486641 NLRP4Q96MN2 994 aa11.06□□□□□ -0.64
CCDC171-208ENST00000486641 SH2D3AQ9BRG2 576 aa11.06□□□□□ -0.64
CCDC171-208ENST00000486641 OXCT2Q9BYC2 517 aaPredicted RBP11.06□□□□□ -0.64
CCDC171-208ENST00000486641 PFDN4Q9NQP4 134 aa11.06□□□□□ -0.64
CCDC171-208ENST00000486641 IP6K2Q9UHH9 426 aa11.06□□□□□ -0.64
CCDC171-208ENST00000486641 ITGA11Q9UKX5 1188 aa11.06□□□□□ -0.64
CCDC171-208ENST00000486641 RBBP6Q7Z6E9 1792 aaKnown RBP11.06□□□□□ -0.64
CCDC171-208ENST00000486641 FOCADQ5VW36 1801 aa11.06□□□□□ -0.64
CCDC171-208ENST00000486641 SMCHD1A6NHR9 2005 aa11.06□□□□□ -0.64
CCDC171-208ENST00000486641 LOC100653049A0A140TA62 436 aa11.06□□□□□ -0.64
CCDC171-208ENST00000486641 ADCY3O60266 1144 aa11.06□□□□□ -0.64
CCDC171-208ENST00000486641 KRT34O76011 436 aa11.06□□□□□ -0.64
CCDC171-208ENST00000486641 KLHL2O95198 593 aa11.06□□□□□ -0.64
CCDC171-208ENST00000486641 MAPTP10636 758 aaKnown RBP11.06□□□□□ -0.64
CCDC171-208ENST00000486641 RBP3P10745 1247 aa11.06□□□□□ -0.64
CCDC171-208ENST00000486641 TSHRP16473 764 aa11.06□□□□□ -0.64
CCDC171-208ENST00000486641 STT3AP46977 705 aa11.06□□□□□ -0.64
CCDC171-208ENST00000486641 NR1H2P55055 460 aa11.06□□□□□ -0.64
CCDC171-208ENST00000486641 NOMO3P69849 1222 aa11.06□□□□□ -0.64
CCDC171-208ENST00000486641 OTUD4Q01804 1114 aaKnown RBP11.06□□□□□ -0.64
CCDC171-208ENST00000486641 ZNF252P-AS1Q0IIN9 211 aa11.06□□□□□ -0.64
CCDC171-208ENST00000486641 STX3Q13277 289 aa11.06□□□□□ -0.64
CCDC171-208ENST00000486641 USP41Q3LFD5 358 aa11.06□□□□□ -0.64
CCDC171-208ENST00000486641 FAM182AQ5T1J6 154 aa11.06□□□□□ -0.64
CCDC171-208ENST00000486641 SYCP2LQ5T4T6 812 aa11.06□□□□□ -0.64
CCDC171-208ENST00000486641 AMIGO2Q86SJ2 522 aa11.06□□□□□ -0.64
CCDC171-208ENST00000486641 SLF2Q8IX21 1173 aa11.06□□□□□ -0.64
CCDC171-208ENST00000486641 PPM1NQ8N819 430 aa11.06□□□□□ -0.64
CCDC171-208ENST00000486641 ACTL9Q8TC94 416 aa11.06□□□□□ -0.64
CCDC171-208ENST00000486641 DCAF4Q8WV16 495 aa11.06□□□□□ -0.64
CCDC171-208ENST00000486641 RSPH1Q8WYR4 309 aa11.06□□□□□ -0.64
CCDC171-208ENST00000486641 ZNF778Q96MU6 729 aa11.06□□□□□ -0.64
CCDC171-208ENST00000486641 FAF1Q9UNN5 650 aaPredicted RBP11.06□□□□□ -0.64
CCDC171-208ENST00000486641 A0A1B0GTW7 788 aa11.05□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms