RNA–Protein interactions for RNA: ENST00000475873.2

USP4-209, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 536 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-209ENST00000475873 PRF1P14222 555 aa5.19□□□□□ -1.58
USP4-209ENST00000475873 TYMPP19971 482 aa5.19□□□□□ -1.58
USP4-209ENST00000475873 MARCKSP29966 332 aaPredicted RBP5.19□□□□□ -1.58
USP4-209ENST00000475873 GRIK1P39086 918 aa5.19□□□□□ -1.58
USP4-209ENST00000475873 CASRP41180 1078 aa5.19□□□□□ -1.58
USP4-209ENST00000475873 TUFMP49411 452 aaKnown RBP5.19□□□□□ -1.58
USP4-209ENST00000475873 ST3GAL1Q11201 340 aa5.19□□□□□ -1.58
USP4-209ENST00000475873 BNIP3Q12983 259 aa5.19□□□□□ -1.58
USP4-209ENST00000475873 ESPL1Q14674 2120 aa5.19□□□□□ -1.58
USP4-209ENST00000475873 EPHA7Q15375 998 aa5.19□□□□□ -1.58
USP4-209ENST00000475873 NPY5RQ15761 445 aa5.19□□□□□ -1.58
USP4-209ENST00000475873 TBR1Q16650 682 aa5.19□□□□□ -1.58
USP4-209ENST00000475873 RTN1Q16799 776 aa5.19□□□□□ -1.58
USP4-209ENST00000475873 DDR2Q16832 855 aa5.19□□□□□ -1.58
USP4-209ENST00000475873 ZSCAN23Q3MJ62 389 aa5.19□□□□□ -1.58
USP4-209ENST00000475873 SEZ6Q53EL9 994 aa5.19□□□□□ -1.58
USP4-209ENST00000475873 ATF7IP2Q5U623 682 aa5.19□□□□□ -1.58
USP4-209ENST00000475873 C1QL3Q5VWW1 255 aa5.19□□□□□ -1.58
USP4-209ENST00000475873 CASC1Q6TDU7 716 aa5.19□□□□□ -1.58
USP4-209ENST00000475873 IGF2-ASQ6U949 168 aa5.19□□□□□ -1.58
USP4-209ENST00000475873 TAS1R3Q7RTX0 852 aa5.19□□□□□ -1.58
USP4-209ENST00000475873 METTL3Q86U44 580 aaKnown RBP5.19□□□□□ -1.58
USP4-209ENST00000475873 CACUL1Q86Y37 369 aa5.19□□□□□ -1.58
USP4-209ENST00000475873 CHPFQ8IZ52 775 aa5.19□□□□□ -1.58
USP4-209ENST00000475873 ZNF564Q8TBZ8 553 aaPredicted RBP5.19□□□□□ -1.58
USP4-209ENST00000475873 PIGOQ8TEQ8 1089 aa5.19□□□□□ -1.58
USP4-209ENST00000475873 WBP2Q969T9 261 aa5.19□□□□□ -1.58
USP4-209ENST00000475873 MIB2Q96AX9 1013 aa5.19□□□□□ -1.58
USP4-209ENST00000475873 TMEM87BQ96K49 555 aa5.19□□□□□ -1.58
USP4-209ENST00000475873 MYRFLQ96LU7 910 aa5.19□□□□□ -1.58
USP4-209ENST00000475873 MTMR9Q96QG7 549 aa5.19□□□□□ -1.58
USP4-209ENST00000475873 ADPGKQ9BRR6 497 aa5.19□□□□□ -1.58
USP4-209ENST00000475873 MTA3Q9BTC8 594 aa5.19□□□□□ -1.58
USP4-209ENST00000475873 RNF38Q9H0F5 515 aa5.19□□□□□ -1.58
USP4-209ENST00000475873 SLC25A18Q9H1K4 315 aa5.19□□□□□ -1.58
USP4-209ENST00000475873 OSGEPQ9NPF4 335 aa5.19□□□□□ -1.58
USP4-209ENST00000475873 ABI2Q9NYB9 513 aaPredicted RBP5.19□□□□□ -1.58
USP4-209ENST00000475873 ADAMTS1Q9UHI8 967 aa5.19□□□□□ -1.58
USP4-209ENST00000475873 ZBTB32Q9Y2Y4 487 aaPredicted RBP5.19□□□□□ -1.58
USP4-209ENST00000475873 STARD13Q9Y3M8 1113 aa5.19□□□□□ -1.58
USP4-209ENST00000475873 RP1P56715 2156 aa5.18□□□□□ -1.58
USP4-209ENST00000475873 TRIM38O00635 465 aa5.18□□□□□ -1.58
USP4-209ENST00000475873 WNT9AO14904 365 aa5.18□□□□□ -1.58
USP4-209ENST00000475873 CASC3O15234 703 aaKnown RBP5.18□□□□□ -1.58
USP4-209ENST00000475873 HOXC11O43248 304 aaPredicted RBP5.18□□□□□ -1.58
USP4-209ENST00000475873 SEMA7AO75326 666 aa5.18□□□□□ -1.58
USP4-209ENST00000475873 PPFIA2O75334 1257 aa5.18□□□□□ -1.58
USP4-209ENST00000475873 LYPLA2O95372 231 aa5.18□□□□□ -1.58
USP4-209ENST00000475873 CLDN1O95832 211 aa5.18□□□□□ -1.58
USP4-209ENST00000475873 CKMT2P17540 419 aa5.18□□□□□ -1.58
USP4-209ENST00000475873 PROZP22891 400 aa5.18□□□□□ -1.58
USP4-209ENST00000475873 ACP1P24666 158 aa5.18□□□□□ -1.58
USP4-209ENST00000475873 EPHA8P29322 1005 aaPredicted RBP5.18□□□□□ -1.58
USP4-209ENST00000475873 LRPAP1P30533 357 aa5.18□□□□□ -1.58
USP4-209ENST00000475873 ACSL1P33121 698 aa5.18□□□□□ -1.58
USP4-209ENST00000475873 ADD1P35611 737 aaKnown RBP5.18□□□□□ -1.58
USP4-209ENST00000475873 AFMP43652 599 aa5.18□□□□□ -1.58
USP4-209ENST00000475873 CD97P48960 835 aa5.18□□□□□ -1.58
USP4-209ENST00000475873 COPAP53621 1224 aa5.18□□□□□ -1.58
USP4-209ENST00000475873 RPL10AP62906 217 aaKnown RBP5.18□□□□□ -1.58
USP4-209ENST00000475873 CYP4F2P78329 520 aa5.18□□□□□ -1.58
USP4-209ENST00000475873 ILKQ13418 452 aa5.18□□□□□ -1.58
USP4-209ENST00000475873 TGIF1Q15583 401 aa5.18□□□□□ -1.58
USP4-209ENST00000475873 ZBTB6Q15916 424 aa5.18□□□□□ -1.58
USP4-209ENST00000475873 TAF12Q16514 161 aa5.18□□□□□ -1.58
USP4-209ENST00000475873 TMEM132AQ24JP5 1023 aa5.18□□□□□ -1.58
USP4-209ENST00000475873 PROX2Q3B8N5 592 aa5.18□□□□□ -1.58
USP4-209ENST00000475873 XKR5Q6UX68 686 aa5.18□□□□□ -1.58
USP4-209ENST00000475873 OTUD6AQ7L8S5 288 aa5.18□□□□□ -1.58
USP4-209ENST00000475873 TRMT11Q7Z4G4 463 aaKnown RBP5.18□□□□□ -1.58
USP4-209ENST00000475873 USP37Q86T82 979 aa5.18□□□□□ -1.58
USP4-209ENST00000475873 FAM124AQ86V42 546 aa5.18□□□□□ -1.58
USP4-209ENST00000475873 TPH2Q8IWU9 490 aa5.18□□□□□ -1.58
USP4-209ENST00000475873 ADGRF2Q8IZF7 708 aa5.18□□□□□ -1.58
USP4-209ENST00000475873 TMTC2Q8N394 836 aa5.18□□□□□ -1.58
USP4-209ENST00000475873 ENGASEQ8NFI3 743 aa5.18□□□□□ -1.58
USP4-209ENST00000475873 KCNV2Q8TDN2 545 aa5.18□□□□□ -1.58
USP4-209ENST00000475873 SNX19Q92543 992 aa5.18□□□□□ -1.58
USP4-209ENST00000475873 BIRC7Q96CA5 298 aa5.18□□□□□ -1.58
USP4-209ENST00000475873 TRMT2BQ96GJ1 504 aaKnown RBP5.18□□□□□ -1.58
USP4-209ENST00000475873 ZBTB45Q96K62 511 aaPredicted RBP5.18□□□□□ -1.58
USP4-209ENST00000475873 SENP8Q96LD8 212 aa5.18□□□□□ -1.58
USP4-209ENST00000475873 TCEANC2Q96MN5 208 aa5.18□□□□□ -1.58
USP4-209ENST00000475873 SLC46A1Q96NT5 459 aa5.18□□□□□ -1.58
USP4-209ENST00000475873 CCNL2Q96S94 520 aaPredicted RBP5.18□□□□□ -1.58
USP4-209ENST00000475873 MMS19Q96T76 1030 aa5.18□□□□□ -1.58
USP4-209ENST00000475873 ELF4Q99607 663 aaPredicted RBP5.18□□□□□ -1.58
USP4-209ENST00000475873 HSD17B14Q9BPX1 270 aa5.18□□□□□ -1.58
USP4-209ENST00000475873 OXCT2Q9BYC2 517 aaPredicted RBP5.18□□□□□ -1.58
USP4-209ENST00000475873 LNPKQ9C0E8 428 aa5.18□□□□□ -1.58
USP4-209ENST00000475873 CHMP4BQ9H444 224 aaKnown RBP5.18□□□□□ -1.58
USP4-209ENST00000475873 ZSWIM4Q9H7M6 989 aa5.18□□□□□ -1.58
USP4-209ENST00000475873 EBF2Q9HAK2 575 aa5.18□□□□□ -1.58
USP4-209ENST00000475873 C6orf50Q9HD87 102 aa5.18□□□□□ -1.58
USP4-209ENST00000475873 THSD1Q9NS62 852 aa5.18□□□□□ -1.58
USP4-209ENST00000475873 GEMIN8Q9NWZ8 242 aaKnown RBP5.18□□□□□ -1.58
USP4-209ENST00000475873 SMPD4Q9NXE4 827 aa5.18□□□□□ -1.58
USP4-209ENST00000475873 VPS54Q9P1Q0 977 aa5.18□□□□□ -1.58
USP4-209ENST00000475873 DDX25Q9UHL0 483 aaKnown RBP5.18□□□□□ -1.58
USP4-209ENST00000475873 ATXN7L1Q9ULK2 861 aaPredicted RBP5.18□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms