RNA–Protein interactions for RNA: ENST00000474432.1

COL7A1-209, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 728 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-209ENST00000474432 SCAMP3O14828 347 aaKnown RBP19.68■□□□□ 0.74
COL7A1-209ENST00000474432 COCHO43405 550 aa19.68■□□□□ 0.74
COL7A1-209ENST00000474432 ABL1P00519 1130 aa19.68■□□□□ 0.74
COL7A1-209ENST00000474432 DRD1P21728 446 aa19.68■□□□□ 0.74
COL7A1-209ENST00000474432 ID4P47928 161 aa19.68■□□□□ 0.74
COL7A1-209ENST00000474432 PMS1P54277 932 aaKnown RBP19.68■□□□□ 0.74
COL7A1-209ENST00000474432 AMPD2Q01433 879 aa19.68■□□□□ 0.74
COL7A1-209ENST00000474432 LPAL2Q16609 132 aa19.68■□□□□ 0.74
COL7A1-209ENST00000474432 COBLL1Q53SF7 1204 aa19.68■□□□□ 0.74
COL7A1-209ENST00000474432 FILIP1Q7Z7B0 1213 aa19.68■□□□□ 0.74
COL7A1-209ENST00000474432 ZC3H3Q8IXZ2 948 aaKnown RBP19.68■□□□□ 0.74
COL7A1-209ENST00000474432 CD101Q93033 1021 aa19.68■□□□□ 0.74
COL7A1-209ENST00000474432 HINFPQ9BQA5 517 aa19.68■□□□□ 0.74
COL7A1-209ENST00000474432 CYP3A43Q9HB55 503 aa19.68■□□□□ 0.74
COL7A1-209ENST00000474432 TMEM8AQ9HCN3 771 aa19.68■□□□□ 0.74
COL7A1-209ENST00000474432 NCDNQ9UBB6 729 aa19.68■□□□□ 0.74
COL7A1-209ENST00000474432 PCDHA5Q9Y5H7 936 aa19.68■□□□□ 0.74
COL7A1-209ENST00000474432 ATP8B3O60423 1300 aa19.68■□□□□ 0.74
COL7A1-209ENST00000474432 CILPO75339 1184 aa19.67■□□□□ 0.74
COL7A1-209ENST00000474432 CLSTN1O94985 981 aa19.67■□□□□ 0.74
COL7A1-209ENST00000474432 CYP17A1P05093 508 aa19.67■□□□□ 0.74
COL7A1-209ENST00000474432 CHRM1P11229 460 aaPredicted RBP19.67■□□□□ 0.74
COL7A1-209ENST00000474432 KRT13P13646 458 aa19.67■□□□□ 0.74
COL7A1-209ENST00000474432 GTF2H1P32780 548 aa19.67■□□□□ 0.74
COL7A1-209ENST00000474432 MAP3K7CLP57077 242 aa19.67■□□□□ 0.74
COL7A1-209ENST00000474432 NUCB2P80303 420 aa19.67■□□□□ 0.74
COL7A1-209ENST00000474432 MESP2Q0VG99 397 aa19.67■□□□□ 0.74
COL7A1-209ENST00000474432 BECN1Q14457 450 aa19.67■□□□□ 0.74
COL7A1-209ENST00000474432 GPRIN1Q7Z2K8 1008 aa19.67■□□□□ 0.74
COL7A1-209ENST00000474432 WDR5BQ86VZ2 330 aa19.67■□□□□ 0.74
COL7A1-209ENST00000474432 PDZD8Q8NEN9 1154 aa19.67■□□□□ 0.74
COL7A1-209ENST00000474432 WBP2Q969T9 261 aa19.67■□□□□ 0.74
COL7A1-209ENST00000474432 HNRNPABQ99729 332 aaKnown RBP19.67■□□□□ 0.74
COL7A1-209ENST00000474432 NIF3L1Q9GZT8 377 aa19.67■□□□□ 0.74
COL7A1-209ENST00000474432 CCSER2Q9H7U1 834 aa19.67■□□□□ 0.74
COL7A1-209ENST00000474432 MMRN2Q9H8L6 949 aa19.67■□□□□ 0.74
COL7A1-209ENST00000474432 COMMD8Q9NX08 183 aa19.67■□□□□ 0.74
COL7A1-209ENST00000474432 GMIPQ9P107 970 aa19.67■□□□□ 0.74
COL7A1-209ENST00000474432 CFAP97Q9P2B7 532 aa19.67■□□□□ 0.74
COL7A1-209ENST00000474432 NFATC1O95644 943 aa19.66■□□□□ 0.74
COL7A1-209ENST00000474432 PXNP49023 591 aaPredicted RBP19.66■□□□□ 0.74
COL7A1-209ENST00000474432 ZNF658Q5TYW1 1059 aaPredicted RBP19.66■□□□□ 0.74
COL7A1-209ENST00000474432 RHBDF2Q6PJF5 856 aa19.66■□□□□ 0.74
COL7A1-209ENST00000474432 CLEC20AQ6ZU45 233 aa19.66■□□□□ 0.74
COL7A1-209ENST00000474432 GSDMAQ96QA5 445 aa19.66■□□□□ 0.74
COL7A1-209ENST00000474432 SPAG17Q6Q759 2223 aa19.66■□□□□ 0.74
COL7A1-209ENST00000474432 SDK1Q7Z5N4 2213 aa19.66■□□□□ 0.74
COL7A1-209ENST00000474432 K7EQS6 105 aa19.65■□□□□ 0.74
COL7A1-209ENST00000474432 MBL2P11226 248 aaPredicted RBP19.65■□□□□ 0.74
COL7A1-209ENST00000474432 ADORA2BP29275 332 aa19.65■□□□□ 0.74
COL7A1-209ENST00000474432 CNR2P34972 360 aa19.65■□□□□ 0.74
COL7A1-209ENST00000474432 TUBP50607 506 aa19.65■□□□□ 0.74
COL7A1-209ENST00000474432 NR1H3Q13133 447 aa19.65■□□□□ 0.74
COL7A1-209ENST00000474432 SIM2Q14190 667 aaPredicted RBP19.65■□□□□ 0.74
COL7A1-209ENST00000474432 DHCR24Q15392 516 aa19.65■□□□□ 0.74
COL7A1-209ENST00000474432 FBXO43Q4G163 708 aa19.65■□□□□ 0.74
COL7A1-209ENST00000474432 HECTD3Q5T447 861 aa19.65■□□□□ 0.74
COL7A1-209ENST00000474432 KRT39Q6A163 491 aa19.65■□□□□ 0.74
COL7A1-209ENST00000474432 ANKRD40Q6AI12 368 aa19.65■□□□□ 0.74
COL7A1-209ENST00000474432 LAIR1Q6GTX8 287 aa19.65■□□□□ 0.74
COL7A1-209ENST00000474432 CYFIP2Q96F07 1278 aa19.65■□□□□ 0.74
COL7A1-209ENST00000474432 TIGD1Q96MW7 591 aa19.65■□□□□ 0.74
COL7A1-209ENST00000474432 NT5C1AQ9BXI3 368 aa19.65■□□□□ 0.74
COL7A1-209ENST00000474432 OSER1Q9NX31 292 aa19.65■□□□□ 0.74
COL7A1-209ENST00000474432 GREM1O60565 184 aa19.64■□□□□ 0.73
COL7A1-209ENST00000474432 ATG13O75143 517 aa19.64■□□□□ 0.73
COL7A1-209ENST00000474432 CD58P19256 250 aa19.64■□□□□ 0.73
COL7A1-209ENST00000474432 SLC6A11P48066 632 aa19.64■□□□□ 0.73
COL7A1-209ENST00000474432 C12orf40Q86WS4 652 aa19.64■□□□□ 0.73
COL7A1-209ENST00000474432 SFTPA1Q8IWL2 248 aa19.64■□□□□ 0.73
COL7A1-209ENST00000474432 RPLP0P6Q8NHW5 317 aa19.64■□□□□ 0.73
COL7A1-209ENST00000474432 TATDN2Q93075 761 aa19.64■□□□□ 0.73
COL7A1-209ENST00000474432 IMPG2Q9BZV3 1241 aa19.64■□□□□ 0.73
COL7A1-209ENST00000474432 RMND1Q9NWS8 449 aa19.64■□□□□ 0.73
COL7A1-209ENST00000474432 DLL3Q9NYJ7 618 aa19.64■□□□□ 0.73
COL7A1-209ENST00000474432 RALGAPA1Q6GYQ0 2036 aa19.63■□□□□ 0.73
COL7A1-209ENST00000474432 CCDC163A0A0D9SF12 145 aa19.63■□□□□ 0.73
COL7A1-209ENST00000474432 E2F8A0AVK6 867 aa19.63■□□□□ 0.73
COL7A1-209ENST00000474432 TRIM49BA6NDI0 452 aa19.63■□□□□ 0.73
COL7A1-209ENST00000474432 CETN3O15182 167 aa19.63■□□□□ 0.73
COL7A1-209ENST00000474432 FAM200BP0CF97 657 aa19.63■□□□□ 0.73
COL7A1-209ENST00000474432 CBWD6Q4V339 395 aa19.63■□□□□ 0.73
COL7A1-209ENST00000474432 CBWD3Q5JTY5 395 aa19.63■□□□□ 0.73
COL7A1-209ENST00000474432 CBWD5Q5RIA9 395 aa19.63■□□□□ 0.73
COL7A1-209ENST00000474432 PPP1R26Q5T8A7 1209 aaPredicted RBP19.63■□□□□ 0.73
COL7A1-209ENST00000474432 PRR23BQ6ZRT6 265 aa19.63■□□□□ 0.73
COL7A1-209ENST00000474432 SYT13Q7L8C5 426 aa19.63■□□□□ 0.73
COL7A1-209ENST00000474432 FBXL13Q8NEE6 735 aa19.63■□□□□ 0.73
COL7A1-209ENST00000474432 USP33Q8TEY7 942 aa19.63■□□□□ 0.73
COL7A1-209ENST00000474432 FAXDC2Q96IV6 333 aa19.63■□□□□ 0.73
COL7A1-209ENST00000474432 ARID3AQ99856 593 aa19.63■□□□□ 0.73
COL7A1-209ENST00000474432 DUSP9Q99956 384 aaKnown RBP19.63■□□□□ 0.73
COL7A1-209ENST00000474432 NMUR1Q9HB89 426 aa19.63■□□□□ 0.73
COL7A1-209ENST00000474432 RAB20Q9NX57 234 aa19.63■□□□□ 0.73
COL7A1-209ENST00000474432 COQ4Q9Y3A0 265 aa19.63■□□□□ 0.73
COL7A1-209ENST00000474432 SLC9A3R1O14745 358 aaPredicted RBP19.62■□□□□ 0.73
COL7A1-209ENST00000474432 TBX18O95935 607 aa19.62■□□□□ 0.73
COL7A1-209ENST00000474432 RETP07949 1114 aa19.62■□□□□ 0.73
COL7A1-209ENST00000474432 CD44P16070 742 aaKnown RBP19.62■□□□□ 0.73
COL7A1-209ENST00000474432 BMP6P22004 513 aa19.62■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms