RNA–Protein interactions for RNA: ENST00000455727.6

LDLR-202, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,333 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-202ENST00000455727 HESX1Q9UBX0 185 aa15.74■□□□□ 0.11
LDLR-202ENST00000455727 MBLAC1A4D2B0 266 aaPredicted RBP15.73■□□□□ 0.11
LDLR-202ENST00000455727 SLC15A5A6NIM6 579 aa15.73■□□□□ 0.11
LDLR-202ENST00000455727 RASSF9O75901 435 aa15.73■□□□□ 0.11
LDLR-202ENST00000455727 DNAJC8O75937 253 aaPredicted RBP15.73■□□□□ 0.11
LDLR-202ENST00000455727 ASMTLO95671 621 aa15.73■□□□□ 0.11
LDLR-202ENST00000455727 F2P00734 622 aa15.73■□□□□ 0.11
LDLR-202ENST00000455727 TGM2P21980 687 aa15.73■□□□□ 0.11
LDLR-202ENST00000455727 MSS51Q4VC12 460 aa15.73■□□□□ 0.11
LDLR-202ENST00000455727 DARS2Q6PI48 645 aaKnown RBP15.73■□□□□ 0.11
LDLR-202ENST00000455727 ARCQ7LC44 396 aa15.73■□□□□ 0.11
LDLR-202ENST00000455727 GDAP1Q8TB36 358 aa15.73■□□□□ 0.11
LDLR-202ENST00000455727 SMC6Q96SB8 1091 aa15.73■□□□□ 0.11
LDLR-202ENST00000455727 DHRS4Q9BTZ2 278 aa15.73■□□□□ 0.11
LDLR-202ENST00000455727 CXCL16Q9H2A7 254 aa15.73■□□□□ 0.11
LDLR-202ENST00000455727 ACSS3Q9H6R3 686 aa15.73■□□□□ 0.11
LDLR-202ENST00000455727 MLXIPLQ9NP71 852 aa15.73■□□□□ 0.11
LDLR-202ENST00000455727 SLC5A4Q9NY91 659 aa15.73■□□□□ 0.11
LDLR-202ENST00000455727 XPO7Q9UIA9 1087 aaKnown RBP15.73■□□□□ 0.11
LDLR-202ENST00000455727 MDM4O15151 490 aa15.73■□□□□ 0.11
LDLR-202ENST00000455727 CAPN15O75808 1086 aa15.73■□□□□ 0.11
LDLR-202ENST00000455727 DARSP14868 501 aaKnown RBP15.73■□□□□ 0.11
LDLR-202ENST00000455727 KRT15P19012 456 aa15.73■□□□□ 0.11
LDLR-202ENST00000455727 IL4RP24394 825 aa15.73■□□□□ 0.11
LDLR-202ENST00000455727 SDC4P31431 198 aa15.73■□□□□ 0.11
LDLR-202ENST00000455727 HNRNPH1P31943 449 aaKnown RBP15.73■□□□□ 0.11
LDLR-202ENST00000455727 SCNN1AP37088 669 aa15.73■□□□□ 0.11
LDLR-202ENST00000455727 RGS7P49802 495 aa15.73■□□□□ 0.11
LDLR-202ENST00000455727 WDR4P57081 412 aaKnown RBP15.73■□□□□ 0.11
LDLR-202ENST00000455727 RNASELQ05823 741 aaKnown RBP15.73■□□□□ 0.11
LDLR-202ENST00000455727 XRCC4Q13426 336 aa15.73■□□□□ 0.11
LDLR-202ENST00000455727 PKN2Q16513 984 aaKnown RBP15.73■□□□□ 0.11
LDLR-202ENST00000455727 KLHL38Q2WGJ6 581 aa15.73■□□□□ 0.11
LDLR-202ENST00000455727 RGS9BPQ6ZS82 235 aa15.73■□□□□ 0.11
LDLR-202ENST00000455727 C3orf62Q6ZUJ4 267 aa15.73■□□□□ 0.11
LDLR-202ENST00000455727 ANKMY2Q8IV38 441 aa15.73■□□□□ 0.11
LDLR-202ENST00000455727 RTP4Q96DX8 246 aa15.73■□□□□ 0.11
LDLR-202ENST00000455727 EIF2AQ9BY44 585 aaKnown RBP15.73■□□□□ 0.11
LDLR-202ENST00000455727 UBQLN1Q9UMX0 589 aaKnown RBP15.73■□□□□ 0.11
LDLR-202ENST00000455727 SLC12A4Q9UP95 1085 aa15.73■□□□□ 0.11
LDLR-202ENST00000455727 NME7Q9Y5B8 376 aa15.73■□□□□ 0.11
LDLR-202ENST00000455727 CFAP69A5D8W1 941 aa15.72■□□□□ 0.11
LDLR-202ENST00000455727 PIK3R2O00459 728 aa15.72■□□□□ 0.11
LDLR-202ENST00000455727 PPEF2O14830 753 aa15.72■□□□□ 0.11
LDLR-202ENST00000455727 ADCY6O43306 1168 aa15.72■□□□□ 0.11
LDLR-202ENST00000455727 TMEM63AO94886 807 aa15.72■□□□□ 0.11
LDLR-202ENST00000455727 SMIM10L2AP0DMW4 78 aa15.72■□□□□ 0.11
LDLR-202ENST00000455727 SMIM10L2BP0DMW5 78 aa15.72■□□□□ 0.11
LDLR-202ENST00000455727 TAC1P20366 129 aa15.72■□□□□ 0.11
LDLR-202ENST00000455727 GAD2Q05329 585 aa15.72■□□□□ 0.11
LDLR-202ENST00000455727 KRT81Q14533 505 aa15.72■□□□□ 0.11
LDLR-202ENST00000455727 C9orf57Q5W0N0 161 aa15.72■□□□□ 0.11
LDLR-202ENST00000455727 ADGRD1Q6QNK2 874 aa15.72■□□□□ 0.11
LDLR-202ENST00000455727 PLD5Q8N7P1 536 aa15.72■□□□□ 0.11
LDLR-202ENST00000455727 NPLOC4Q8TAT6 608 aa15.72■□□□□ 0.11
LDLR-202ENST00000455727 TRAF3IP1Q8TDR0 691 aaPredicted RBP15.72■□□□□ 0.11
LDLR-202ENST00000455727 FRMD8Q9BZ67 464 aaPredicted RBP15.72■□□□□ 0.11
LDLR-202ENST00000455727 FAM49AQ9H0Q0 323 aaPredicted RBP15.72■□□□□ 0.11
LDLR-202ENST00000455727 ZNF408Q9H9D4 720 aa15.72■□□□□ 0.11
LDLR-202ENST00000455727 CDHR5Q9HBB8 845 aa15.72■□□□□ 0.11
LDLR-202ENST00000455727 CYLDQ9NQC7 956 aa15.72■□□□□ 0.11
LDLR-202ENST00000455727 PRKAG3Q9UGI9 489 aa15.72■□□□□ 0.11
LDLR-202ENST00000455727 TUBGCP4Q9UGJ1 667 aa15.72■□□□□ 0.11
LDLR-202ENST00000455727 ARL2BPQ9Y2Y0 163 aa15.72■□□□□ 0.11
LDLR-202ENST00000455727 TCRBV7S3A2A0A539 114 aa15.72■□□□□ 0.11
LDLR-202ENST00000455727 CHADO15335 359 aa15.72■□□□□ 0.11
LDLR-202ENST00000455727 PAPSS1O43252 624 aaPredicted RBP15.72■□□□□ 0.11
LDLR-202ENST00000455727 GRAP2O75791 330 aa15.72■□□□□ 0.11
LDLR-202ENST00000455727 CD4P01730 458 aa15.72■□□□□ 0.11
LDLR-202ENST00000455727 ATP2A2P16615 1042 aaKnown RBP15.72■□□□□ 0.11
LDLR-202ENST00000455727 SSTR1P30872 391 aa15.72■□□□□ 0.11
LDLR-202ENST00000455727 RPL34P49207 117 aaKnown RBP15.72■□□□□ 0.11
LDLR-202ENST00000455727 SPARCL1Q14515 664 aa15.72■□□□□ 0.11
LDLR-202ENST00000455727 MTFR1Q15390 333 aa15.72■□□□□ 0.11
LDLR-202ENST00000455727 CDO1Q16878 200 aa15.72■□□□□ 0.11
LDLR-202ENST00000455727 SOWAHAQ2M3V2 549 aa15.72■□□□□ 0.11
LDLR-202ENST00000455727 RAB6CQ53S08 254 aa15.72■□□□□ 0.11
LDLR-202ENST00000455727 SLC9A4Q6AI14 798 aa15.72■□□□□ 0.11
LDLR-202ENST00000455727 SPATA21Q7Z572 469 aa15.72■□□□□ 0.11
LDLR-202ENST00000455727 SUGP1Q8IWZ8 645 aaKnown RBP15.72■□□□□ 0.11
LDLR-202ENST00000455727 PALM2Q8IXS6 379 aa15.72■□□□□ 0.11
LDLR-202ENST00000455727 CRYBG2Q8N1P7 616 aa15.72■□□□□ 0.11
LDLR-202ENST00000455727 GBP7Q8N8V2 638 aaPredicted RBP15.72■□□□□ 0.11
LDLR-202ENST00000455727 FBXO36Q8NEA4 188 aa15.72■□□□□ 0.11
LDLR-202ENST00000455727 FAM172AQ8WUF8 416 aa15.72■□□□□ 0.11
LDLR-202ENST00000455727 FAF2Q96CS3 445 aa15.72■□□□□ 0.11
LDLR-202ENST00000455727 RAB6CQ9H0N0 254 aa15.72■□□□□ 0.11
LDLR-202ENST00000455727 USP29Q9HBJ7 922 aa15.72■□□□□ 0.11
LDLR-202ENST00000455727 PIRO00625 290 aa15.71■□□□□ 0.11
LDLR-202ENST00000455727 BANF1O75531 89 aa15.71■□□□□ 0.11
LDLR-202ENST00000455727 ECM2O94769 699 aaPredicted RBP15.71■□□□□ 0.11
LDLR-202ENST00000455727 PTPN9P43378 593 aa15.71■□□□□ 0.11
LDLR-202ENST00000455727 BASP1P80723 227 aaKnown RBP15.71■□□□□ 0.11
LDLR-202ENST00000455727 ATP11AP98196 1134 aa15.71■□□□□ 0.11
LDLR-202ENST00000455727 PDE4CQ08493 712 aa15.71■□□□□ 0.11
LDLR-202ENST00000455727 TMEM62Q0P6H9 643 aa15.71■□□□□ 0.11
LDLR-202ENST00000455727 KCNJ11Q14654 390 aa15.71■□□□□ 0.11
LDLR-202ENST00000455727 NPNTQ6UXI9 565 aa15.71■□□□□ 0.11
LDLR-202ENST00000455727 SCUBE3Q8IX30 993 aa15.71■□□□□ 0.11
LDLR-202ENST00000455727 OR6B3Q8NGW1 331 aa15.71■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms