RNA–Protein interactions for RNA: ENST00000433762.1

COL6A3-207, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best)

Gene COL6A3, Length 2,379 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-207ENST00000433762 CCDC22O60826 627 aa14.24□□□□□ -0.13
COL6A3-207ENST00000433762 CXCL8P10145 99 aa14.24□□□□□ -0.13
COL6A3-207ENST00000433762 GNAZP19086 355 aa14.24□□□□□ -0.13
COL6A3-207ENST00000433762 PRKCHP24723 683 aa14.24□□□□□ -0.13
COL6A3-207ENST00000433762 CCNFP41002 786 aa14.24□□□□□ -0.13
COL6A3-207ENST00000433762 ELK3P41970 407 aa14.24□□□□□ -0.13
COL6A3-207ENST00000433762 BASP1P80723 227 aaKnown RBP14.24□□□□□ -0.13
COL6A3-207ENST00000433762 EFTUD2Q15029 972 aaKnown RBP eCLIP14.24□□□□□ -0.13
COL6A3-207ENST00000433762 KCNT1Q5JUK3 1230 aa14.24□□□□□ -0.13
COL6A3-207ENST00000433762 EEF1DP3Q658K8 133 aa14.24□□□□□ -0.13
COL6A3-207ENST00000433762 DARS2Q6PI48 645 aaKnown RBP14.24□□□□□ -0.13
COL6A3-207ENST00000433762 CAPN12Q6ZSI9 719 aa14.24□□□□□ -0.13
COL6A3-207ENST00000433762 FAM13CQ8NE31 585 aa14.24□□□□□ -0.13
COL6A3-207ENST00000433762 MIEF2Q96C03 454 aa14.24□□□□□ -0.13
COL6A3-207ENST00000433762 FAF2Q96CS3 445 aa14.24□□□□□ -0.13
COL6A3-207ENST00000433762 INO80BQ9C086 356 aaPredicted RBP14.24□□□□□ -0.13
COL6A3-207ENST00000433762 PRDM16Q9HAZ2 1276 aa14.24□□□□□ -0.13
COL6A3-207ENST00000433762 DONSONQ9NYP3 566 aa14.24□□□□□ -0.13
COL6A3-207ENST00000433762 SAE1Q9UBE0 346 aaPredicted RBP14.24□□□□□ -0.13
COL6A3-207ENST00000433762 LRRC42Q9Y546 428 aa14.24□□□□□ -0.13
COL6A3-207ENST00000433762 GJA3Q9Y6H8 435 aa14.24□□□□□ -0.13
COL6A3-207ENST00000433762 CITO14578 2027 aa14.24□□□□□ -0.13
COL6A3-207ENST00000433762 MDM4O15151 490 aa14.24□□□□□ -0.13
COL6A3-207ENST00000433762 PRPSAP2O60256 369 aa14.24□□□□□ -0.13
COL6A3-207ENST00000433762 PEX11AO75192 247 aa14.24□□□□□ -0.13
COL6A3-207ENST00000433762 BANF1O75531 89 aa14.24□□□□□ -0.13
COL6A3-207ENST00000433762 USP2O75604 605 aaPredicted RBP14.24□□□□□ -0.13
COL6A3-207ENST00000433762 KRT37O76014 449 aa14.24□□□□□ -0.13
COL6A3-207ENST00000433762 COL1A2P08123 1366 aa14.24□□□□□ -0.13
COL6A3-207ENST00000433762 CD48P09326 243 aa14.24□□□□□ -0.13
COL6A3-207ENST00000433762 MARK3P27448 753 aa14.24□□□□□ -0.13
COL6A3-207ENST00000433762 GAD2Q05329 585 aa14.24□□□□□ -0.13
COL6A3-207ENST00000433762 TAF1BQ53T94 588 aaPredicted RBP14.24□□□□□ -0.13
COL6A3-207ENST00000433762 FAM102AQ5T9C2 384 aaPredicted RBP14.24□□□□□ -0.13
COL6A3-207ENST00000433762 SLC9A4Q6AI14 798 aa14.24□□□□□ -0.13
COL6A3-207ENST00000433762 CCDC62Q6P9F0 684 aa14.24□□□□□ -0.13
COL6A3-207ENST00000433762 CYS1Q717R9 158 aa14.24□□□□□ -0.13
COL6A3-207ENST00000433762 ZDHHC17Q8IUH5 632 aa14.24□□□□□ -0.13
COL6A3-207ENST00000433762 TEX9Q8N6V9 391 aa14.24□□□□□ -0.13
COL6A3-207ENST00000433762 DDX51Q8N8A6 666 aaKnown RBP eCLIP14.24□□□□□ -0.13
COL6A3-207ENST00000433762 SKA1Q96BD8 255 aa14.24□□□□□ -0.13
COL6A3-207ENST00000433762 ZNF670Q9BS34 389 aa14.24□□□□□ -0.13
COL6A3-207ENST00000433762 USP29Q9HBJ7 922 aa14.24□□□□□ -0.13
COL6A3-207ENST00000433762 TJP2Q9UDY2 1190 aa14.24□□□□□ -0.13
COL6A3-207ENST00000433762 EVPLQ92817 2033 aa14.23□□□□□ -0.13
COL6A3-207ENST00000433762 DNAJC25-GNG10A0A024R161 153 aa14.23□□□□□ -0.13
COL6A3-207ENST00000433762 TCRBV7S3A2A0A539 114 aa14.23□□□□□ -0.13
COL6A3-207ENST00000433762 A8MUI8 341 aa14.23□□□□□ -0.13
COL6A3-207ENST00000433762 SOCS7O14512 581 aa14.23□□□□□ -0.13
COL6A3-207ENST00000433762 DIAPH2O60879 1101 aa14.23□□□□□ -0.13
COL6A3-207ENST00000433762 C1QAP02745 245 aa14.23□□□□□ -0.13
COL6A3-207ENST00000433762 NFICP08651 508 aa14.23□□□□□ -0.13
COL6A3-207ENST00000433762 KRT19P08727 400 aa14.23□□□□□ -0.13
COL6A3-207ENST00000433762 SCNN1AP37088 669 aa14.23□□□□□ -0.13
COL6A3-207ENST00000433762 CDH6P55285 790 aa14.23□□□□□ -0.13
COL6A3-207ENST00000433762 CDK16Q00536 496 aa14.23□□□□□ -0.13
COL6A3-207ENST00000433762 LY6KQ17RY6 165 aa14.23□□□□□ -0.13
COL6A3-207ENST00000433762 ANKRD20A2Q5SQ80 823 aa14.23□□□□□ -0.13
COL6A3-207ENST00000433762 ANKRD20A1Q5TYW2 823 aa14.23□□□□□ -0.13
COL6A3-207ENST00000433762 ANKRD20A3Q5VUR7 823 aa14.23□□□□□ -0.13
COL6A3-207ENST00000433762 ARCQ7LC44 396 aa14.23□□□□□ -0.13
COL6A3-207ENST00000433762 LRRC71Q8N4P6 559 aa14.23□□□□□ -0.13
COL6A3-207ENST00000433762 EMC1Q8N766 993 aa14.23□□□□□ -0.13
COL6A3-207ENST00000433762 CALN1Q9BXU9 219 aa14.23□□□□□ -0.13
COL6A3-207ENST00000433762 KLC2Q9H0B6 622 aa14.23□□□□□ -0.13
COL6A3-207ENST00000433762 SMYD3Q9H7B4 428 aa14.23□□□□□ -0.13
COL6A3-207ENST00000433762 DCLRE1BQ9H816 532 aa14.23□□□□□ -0.13
COL6A3-207ENST00000433762 GBA2Q9HCG7 927 aaPredicted RBP14.23□□□□□ -0.13
COL6A3-207ENST00000433762 NPHS2Q9NP85 383 aa14.23□□□□□ -0.13
COL6A3-207ENST00000433762 CHMP2BQ9UQN3 213 aa14.23□□□□□ -0.13
COL6A3-207ENST00000433762 LACTBL1A8MY62 500 aa14.23□□□□□ -0.13
COL6A3-207ENST00000433762 KBTBD13C9JR72 458 aa14.23□□□□□ -0.13
COL6A3-207ENST00000433762 HAUS5O94927 633 aa14.23□□□□□ -0.13
COL6A3-207ENST00000433762 SNRPAP09012 282 aaKnown RBP14.23□□□□□ -0.13
COL6A3-207ENST00000433762 STAG3L1P0CL83 205 aa14.23□□□□□ -0.13
COL6A3-207ENST00000433762 RAP1GAPP47736 663 aa14.23□□□□□ -0.13
COL6A3-207ENST00000433762 TREML2Q5T2D2 321 aa14.23□□□□□ -0.13
COL6A3-207ENST00000433762 JADE1Q6IE81 842 aa14.23□□□□□ -0.13
COL6A3-207ENST00000433762 LONP2Q86WA8 852 aa14.23□□□□□ -0.13
COL6A3-207ENST00000433762 NCAPG2Q86XI2 1143 aa14.23□□□□□ -0.13
COL6A3-207ENST00000433762 LINC01465Q8N7H1 131 aa14.23□□□□□ -0.13
COL6A3-207ENST00000433762 TRAF3IP1Q8TDR0 691 aaPredicted RBP14.23□□□□□ -0.13
COL6A3-207ENST00000433762 HSPH1Q92598 858 aa14.23□□□□□ -0.13
COL6A3-207ENST00000433762 C7orf26Q96N11 449 aa14.23□□□□□ -0.13
COL6A3-207ENST00000433762 PEBP4Q96S96 227 aa14.23□□□□□ -0.13
COL6A3-207ENST00000433762 GPRC5DQ9NZD1 345 aa14.23□□□□□ -0.13
COL6A3-207ENST00000433762 KANSL3Q9P2N6 904 aa14.23□□□□□ -0.13
COL6A3-207ENST00000433762 PCSK1NQ9UHG2 260 aa14.23□□□□□ -0.13
COL6A3-207ENST00000433762 APOL1O14791 398 aa14.22□□□□□ -0.13
COL6A3-207ENST00000433762 ARIH2O95376 493 aa14.22□□□□□ -0.13
COL6A3-207ENST00000433762 C22orf31O95567 290 aa14.22□□□□□ -0.13
COL6A3-207ENST00000433762 ITGB3P05106 788 aa14.22□□□□□ -0.13
COL6A3-207ENST00000433762 ZFXP17010 805 aaPredicted RBP14.22□□□□□ -0.13
COL6A3-207ENST00000433762 MAGEA3P43357 314 aa14.22□□□□□ -0.13
COL6A3-207ENST00000433762 ARFIP2P53365 341 aa14.22□□□□□ -0.13
COL6A3-207ENST00000433762 RBP5P82980 135 aa14.22□□□□□ -0.13
COL6A3-207ENST00000433762 AMHR2Q16671 573 aa14.22□□□□□ -0.13
COL6A3-207ENST00000433762 TMEM132AQ24JP5 1023 aa14.22□□□□□ -0.13
COL6A3-207ENST00000433762 HSDL1Q3SXM5 330 aa14.22□□□□□ -0.13
COL6A3-207ENST00000433762 EFCAB12Q6NXP0 572 aa14.22□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms