RNA–Protein interactions for RNA: ENST00000401394.5

CTCF-202, Transcript of CCCTC-binding factor, humanhuman

TSL 1 (best) BASIC

Gene CTCF, Length 2,978 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-202ENST00000401394 COPEO14579 308 aa21.87■■□□□ 1.09
CTCF-202ENST00000401394 PDE5AO76074 875 aa21.87■■□□□ 1.09
CTCF-202ENST00000401394 SNUPNO95149 360 aaKnown RBP21.87■■□□□ 1.09
CTCF-202ENST00000401394 KRT19P08727 400 aa21.87■■□□□ 1.09
CTCF-202ENST00000401394 SRGAP2CP0DJJ0 459 aa21.87■■□□□ 1.09
CTCF-202ENST00000401394 CWF19L1Q69YN2 538 aaKnown RBP21.87■■□□□ 1.09
CTCF-202ENST00000401394 RNF111Q6ZNA4 994 aa21.87■■□□□ 1.09
CTCF-202ENST00000401394 TMEM35BQ8NCS4 154 aa21.87■■□□□ 1.09
CTCF-202ENST00000401394 RILPQ96NA2 401 aa21.87■■□□□ 1.09
CTCF-202ENST00000401394 WDR35Q9P2L0 1181 aa21.87■■□□□ 1.09
CTCF-202ENST00000401394 STRIP2Q9ULQ0 834 aa21.87■■□□□ 1.09
CTCF-202ENST00000401394 BRWD3Q6RI45 1802 aa21.87■■□□□ 1.09
CTCF-202ENST00000401394 TM9SF1O15321 606 aa21.87■■□□□ 1.09
CTCF-202ENST00000401394 CRADDP78560 199 aa21.87■■□□□ 1.09
CTCF-202ENST00000401394 MCL1Q07820 350 aa21.87■■□□□ 1.09
CTCF-202ENST00000401394 KLHL38Q2WGJ6 581 aa21.87■■□□□ 1.09
CTCF-202ENST00000401394 LPCAT4Q643R3 524 aa21.87■■□□□ 1.09
CTCF-202ENST00000401394 CIAPIN1Q6FI81 312 aa21.87■■□□□ 1.09
CTCF-202ENST00000401394 IRGCQ6NXR0 463 aa21.87■■□□□ 1.09
CTCF-202ENST00000401394 UBA3Q8TBC4 463 aa21.87■■□□□ 1.09
CTCF-202ENST00000401394 MOCOSQ96EN8 888 aa21.87■■□□□ 1.09
CTCF-202ENST00000401394 STX18Q9P2W9 335 aaKnown RBP21.87■■□□□ 1.09
CTCF-202ENST00000401394 KCNG1Q9UIX4 513 aa21.87■■□□□ 1.09
CTCF-202ENST00000401394 SPATA31D3P0C874 917 aa21.86■■□□□ 1.09
CTCF-202ENST00000401394 SPATA31D4Q6ZUB0 917 aa21.86■■□□□ 1.09
CTCF-202ENST00000401394 SLC44A1Q8WWI5 657 aa21.86■■□□□ 1.09
CTCF-202ENST00000401394 GATA6Q92908 595 aa21.86■■□□□ 1.09
CTCF-202ENST00000401394 FAF2Q96CS3 445 aa21.86■■□□□ 1.09
CTCF-202ENST00000401394 PPP1R16BQ96T49 567 aa21.86■■□□□ 1.09
CTCF-202ENST00000401394 CGRRF1Q99675 332 aa21.86■■□□□ 1.09
CTCF-202ENST00000401394 MAP3K7O43318 606 aa21.86■■□□□ 1.09
CTCF-202ENST00000401394 AHCYL1O43865 530 aa21.86■■□□□ 1.09
CTCF-202ENST00000401394 C6orf222P0C671 652 aaPredicted RBP21.86■■□□□ 1.09
CTCF-202ENST00000401394 CSH1P0DML2 217 aa21.86■■□□□ 1.09
CTCF-202ENST00000401394 CSH2P0DML3 217 aa21.86■■□□□ 1.09
CTCF-202ENST00000401394 SKIP12755 728 aa21.86■■□□□ 1.09
CTCF-202ENST00000401394 TGFB2P61812 414 aa21.86■■□□□ 1.09
CTCF-202ENST00000401394 AP1B1Q10567 949 aa21.86■■□□□ 1.09
CTCF-202ENST00000401394 EEPD1Q7L9B9 569 aa21.86■■□□□ 1.09
CTCF-202ENST00000401394 RSPH3Q86UC2 560 aa21.86■■□□□ 1.09
CTCF-202ENST00000401394 ATP6V0A1Q93050 837 aa21.86■■□□□ 1.09
CTCF-202ENST00000401394 ZNF184Q99676 751 aaPredicted RBP21.86■■□□□ 1.09
CTCF-202ENST00000401394 TIPINQ9BVW5 301 aa21.86■■□□□ 1.09
CTCF-202ENST00000401394 APOL6Q9BWW8 343 aa21.86■■□□□ 1.09
CTCF-202ENST00000401394 MTO1Q9Y2Z2 717 aaKnown RBP21.86■■□□□ 1.09
CTCF-202ENST00000401394 ITM2AO43736 263 aa21.85■■□□□ 1.09
CTCF-202ENST00000401394 RNASEH1O60930 286 aaKnown RBP21.85■■□□□ 1.09
CTCF-202ENST00000401394 ASS1P00966 412 aaKnown RBP21.85■■□□□ 1.09
CTCF-202ENST00000401394 ASNSP08243 561 aa21.85■■□□□ 1.09
CTCF-202ENST00000401394 ANPEPP15144 967 aa21.85■■□□□ 1.09
CTCF-202ENST00000401394 TRNP1Q6NT89 227 aa21.85■■□□□ 1.09
CTCF-202ENST00000401394 ULK2Q8IYT8 1036 aa21.85■■□□□ 1.09
CTCF-202ENST00000401394 DEFB129Q9H1M3 183 aa21.85■■□□□ 1.09
CTCF-202ENST00000401394 EBF3Q9H4W6 596 aa21.85■■□□□ 1.09
CTCF-202ENST00000401394 E7ESA3 106 aa21.85■■□□□ 1.09
CTCF-202ENST00000401394 CALB1P05937 261 aa21.85■■□□□ 1.09
CTCF-202ENST00000401394 EPHB1P54762 984 aa21.85■■□□□ 1.09
CTCF-202ENST00000401394 OCRLQ01968 901 aa21.85■■□□□ 1.09
CTCF-202ENST00000401394 PIGHQ14442 188 aaPredicted RBP21.85■■□□□ 1.09
CTCF-202ENST00000401394 LBRQ14739 615 aaKnown RBP21.85■■□□□ 1.09
CTCF-202ENST00000401394 VWA5B1Q5TIE3 1220 aa21.85■■□□□ 1.09
CTCF-202ENST00000401394 RSBN1LQ6PCB5 846 aaPredicted RBP21.85■■□□□ 1.09
CTCF-202ENST00000401394 MCPH1Q8NEM0 835 aa21.85■■□□□ 1.09
CTCF-202ENST00000401394 PHACTR1Q9C0D0 580 aa21.85■■□□□ 1.09
CTCF-202ENST00000401394 IQCGQ9H095 443 aaKnown RBP21.85■■□□□ 1.09
CTCF-202ENST00000401394 CYP4F11Q9HBI6 524 aa21.85■■□□□ 1.09
CTCF-202ENST00000401394 STAU2Q9NUL3 570 aaKnown RBP eCLIP21.85■■□□□ 1.09
CTCF-202ENST00000401394 TEX264Q9Y6I9 313 aa21.85■■□□□ 1.09
CTCF-202ENST00000401394 H7C0C1 242 aa21.84■■□□□ 1.09
CTCF-202ENST00000401394 APRTP07741 180 aa21.84■■□□□ 1.09
CTCF-202ENST00000401394 ATP5OP48047 213 aa21.84■■□□□ 1.09
CTCF-202ENST00000401394 PDE1BQ01064 536 aa21.84■■□□□ 1.09
CTCF-202ENST00000401394 C1orf146Q5VVC0 180 aa21.84■■□□□ 1.09
CTCF-202ENST00000401394 SNRNP48Q6IEG0 339 aaKnown RBP21.84■■□□□ 1.09
CTCF-202ENST00000401394 BBS12Q6ZW61 710 aa21.84■■□□□ 1.09
CTCF-202ENST00000401394 LRRC71Q8N4P6 559 aa21.84■■□□□ 1.09
CTCF-202ENST00000401394 CCDC110Q8TBZ0 833 aa21.84■■□□□ 1.09
CTCF-202ENST00000401394 HMX2A2RU54 273 aa21.84■■□□□ 1.09
CTCF-202ENST00000401394 CAPN14A8MX76 684 aa21.84■■□□□ 1.09
CTCF-202ENST00000401394 C1QAP02745 245 aa21.84■■□□□ 1.09
CTCF-202ENST00000401394 ADORA2AP29274 412 aa21.84■■□□□ 1.09
CTCF-202ENST00000401394 ABHD15Q6UXT9 468 aa21.84■■□□□ 1.09
CTCF-202ENST00000401394 SCUBE1Q8IWY4 988 aa21.84■■□□□ 1.09
CTCF-202ENST00000401394 FGD4Q96M96 766 aa21.84■■□□□ 1.09
CTCF-202ENST00000401394 CNTN6Q9UQ52 1028 aa21.84■■□□□ 1.09
CTCF-202ENST00000401394 PSAPP07602 524 aa21.84■■□□□ 1.09
CTCF-202ENST00000401394 LYNP07948 512 aa21.84■■□□□ 1.09
CTCF-202ENST00000401394 CDH6P55285 790 aa21.84■■□□□ 1.09
CTCF-202ENST00000401394 CAPSQ13938 189 aa21.84■■□□□ 1.09
CTCF-202ENST00000401394 ZC3H12AQ5D1E8 599 aaKnown RBP21.84■■□□□ 1.09
CTCF-202ENST00000401394 DENND5BQ6ZUT9 1274 aa21.84■■□□□ 1.09
CTCF-202ENST00000401394 UBR7Q8N806 425 aa21.84■■□□□ 1.09
CTCF-202ENST00000401394 TTLL3Q9Y4R7 772 aa21.84■■□□□ 1.09
CTCF-202ENST00000401394 MAD1L1Q9Y6D9 718 aa21.84■■□□□ 1.09
CTCF-202ENST00000401394 KCNN4O15554 427 aa21.83■■□□□ 1.09
CTCF-202ENST00000401394 HMGB2P26583 209 aaKnown RBP21.83■■□□□ 1.09
CTCF-202ENST00000401394 YWHAZP63104 245 aaKnown RBP21.83■■□□□ 1.09
CTCF-202ENST00000401394 LOC100653049A0A140TA62 436 aa21.83■■□□□ 1.08
CTCF-202ENST00000401394 IQANK1A0A1B0GTG1 560 aa21.83■■□□□ 1.08
CTCF-202ENST00000401394 ARHGAP42A6NI28 874 aa21.83■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms