RNA–Protein interactions for RNA: ENST00000338585.6

MCF2-201, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MCF2, Length 2,826 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-201ENST00000338585 NGRNQ9NPE2 291 aaKnown RBP4.34□□□□□ -1.71
MCF2-201ENST00000338585 ZNF446Q9NWS9 450 aa4.34□□□□□ -1.71
MCF2-201ENST00000338585 AMACRQ9UHK6 382 aa4.34□□□□□ -1.71
MCF2-201ENST00000338585 DSEQ9UL01 958 aa4.34□□□□□ -1.71
MCF2-201ENST00000338585 R3HDM2Q9Y2K5 976 aaKnown RBP4.34□□□□□ -1.71
MCF2-201ENST00000338585 FAN1Q9Y2M0 1017 aa4.34□□□□□ -1.71
MCF2-201ENST00000338585 SBDSQ9Y3A5 250 aaKnown RBP eCLIP4.34□□□□□ -1.71
MCF2-201ENST00000338585 NLRC5Q86WI3 1866 aa4.34□□□□□ -1.71
MCF2-201ENST00000338585 LRRD1A4D1F6 860 aa4.34□□□□□ -1.72
MCF2-201ENST00000338585 C3orf70A6NLC5 250 aaPredicted RBP4.34□□□□□ -1.72
MCF2-201ENST00000338585 YJEFN3A6XGL0 299 aa4.34□□□□□ -1.72
MCF2-201ENST00000338585 E7ENQ6 273 aa4.34□□□□□ -1.72
MCF2-201ENST00000338585 FSCN2O14926 492 aa4.34□□□□□ -1.72
MCF2-201ENST00000338585 KIAA0355O15063 1070 aa4.34□□□□□ -1.72
MCF2-201ENST00000338585 TTI1O43156 1089 aa4.34□□□□□ -1.72
MCF2-201ENST00000338585 HOXA2O43364 376 aa4.34□□□□□ -1.72
MCF2-201ENST00000338585 HEXIM1O94992 359 aaKnown RBP4.34□□□□□ -1.72
MCF2-201ENST00000338585 OAZ2O95190 189 aa4.34□□□□□ -1.72
MCF2-201ENST00000338585 ZRANB2O95218 330 aaKnown RBP eCLIP4.34□□□□□ -1.72
MCF2-201ENST00000338585 ALDH2P05091 517 aa4.34□□□□□ -1.72
MCF2-201ENST00000338585 CD48P09326 243 aa4.34□□□□□ -1.72
MCF2-201ENST00000338585 CYP2F1P24903 491 aa4.34□□□□□ -1.72
MCF2-201ENST00000338585 ACADSBP45954 432 aa4.34□□□□□ -1.72
MCF2-201ENST00000338585 KCNJ1P48048 391 aa4.34□□□□□ -1.72
MCF2-201ENST00000338585 GPR15P49685 360 aa4.34□□□□□ -1.72
MCF2-201ENST00000338585 ARPP19P56211 112 aa4.34□□□□□ -1.72
MCF2-201ENST00000338585 HDAC4P56524 1084 aa4.34□□□□□ -1.72
MCF2-201ENST00000338585 SLC8A3P57103 927 aa4.34□□□□□ -1.72
MCF2-201ENST00000338585 MRPS5P82675 430 aaKnown RBP4.34□□□□□ -1.72
MCF2-201ENST00000338585 TSPY1Q01534 308 aa4.34□□□□□ -1.72
MCF2-201ENST00000338585 RTP2Q5QGT7 225 aa4.34□□□□□ -1.72
MCF2-201ENST00000338585 LRRC38Q5VT99 294 aa4.34□□□□□ -1.72
MCF2-201ENST00000338585 SDHAF4Q5VUM1 108 aa4.34□□□□□ -1.72
MCF2-201ENST00000338585 SYPL2Q5VXT5 272 aa4.34□□□□□ -1.72
MCF2-201ENST00000338585 KAZNQ674X7 775 aa4.34□□□□□ -1.72
MCF2-201ENST00000338585 FUT10Q6P4F1 479 aa4.34□□□□□ -1.72
MCF2-201ENST00000338585 RSPO2Q6UXX9 243 aaPredicted RBP4.34□□□□□ -1.72
MCF2-201ENST00000338585 OTOP2Q7RTS6 562 aa4.34□□□□□ -1.72
MCF2-201ENST00000338585 LRRC43Q8N309 656 aa4.34□□□□□ -1.72
MCF2-201ENST00000338585 EXD1Q8NHP7 514 aa4.34□□□□□ -1.72
MCF2-201ENST00000338585 SPATA18Q8TC71 538 aa4.34□□□□□ -1.72
MCF2-201ENST00000338585 FAM172AQ8WUF8 416 aa4.34□□□□□ -1.72
MCF2-201ENST00000338585 C1orf54Q8WWF1 131 aa4.34□□□□□ -1.72
MCF2-201ENST00000338585 KCTD13Q8WZ19 329 aa4.34□□□□□ -1.72
MCF2-201ENST00000338585 HSPH1Q92598 858 aa4.34□□□□□ -1.72
MCF2-201ENST00000338585 ZBTB9Q96C00 473 aa4.34□□□□□ -1.72
MCF2-201ENST00000338585 SMARCD1Q96GM5 515 aa4.34□□□□□ -1.72
MCF2-201ENST00000338585 SLITRK1Q96PX8 696 aa4.34□□□□□ -1.72
MCF2-201ENST00000338585 TBCBQ99426 244 aa4.34□□□□□ -1.72
MCF2-201ENST00000338585 TRIM51Q9BSJ1 452 aa4.34□□□□□ -1.72
MCF2-201ENST00000338585 COLEC11Q9BWP8 271 aa4.34□□□□□ -1.72
MCF2-201ENST00000338585 VN1R3Q9BXE9 311 aa4.34□□□□□ -1.72
MCF2-201ENST00000338585 MRPL9Q9BYD2 267 aaKnown RBP4.34□□□□□ -1.72
MCF2-201ENST00000338585 MAGEB5Q9BZ81 275 aa4.34□□□□□ -1.72
MCF2-201ENST00000338585 CWH43Q9H720 699 aa4.34□□□□□ -1.72
MCF2-201ENST00000338585 CSNK1G1Q9HCP0 422 aa4.34□□□□□ -1.72
MCF2-201ENST00000338585 ASNSD1Q9NWL6 643 aa4.34□□□□□ -1.72
MCF2-201ENST00000338585 GPATCH2LQ9NWQ4 482 aa4.34□□□□□ -1.72
MCF2-201ENST00000338585 ABI2Q9NYB9 513 aaPredicted RBP4.34□□□□□ -1.72
MCF2-201ENST00000338585 RAB21Q9UL25 225 aa4.34□□□□□ -1.72
MCF2-201ENST00000338585 USP18Q9UMW8 372 aa4.34□□□□□ -1.72
MCF2-201ENST00000338585 LTBP2Q14767 1821 aa4.34□□□□□ -1.72
MCF2-201ENST00000338585 SF3B1O75533 1304 aaKnown RBP eCLIP4.33□□□□□ -1.72
MCF2-201ENST00000338585 TARSL2A2RTX5 802 aaKnown RBP4.33□□□□□ -1.72
MCF2-201ENST00000338585 CCDC188H7C350 402 aa4.33□□□□□ -1.72
MCF2-201ENST00000338585 DPYSL4O14531 572 aa4.33□□□□□ -1.72
MCF2-201ENST00000338585 TRAPPC3O43617 180 aa4.33□□□□□ -1.72
MCF2-201ENST00000338585 SOAT2O75908 522 aa4.33□□□□□ -1.72
MCF2-201ENST00000338585 RNF8O76064 485 aa4.33□□□□□ -1.72
MCF2-201ENST00000338585 TRUB2O95900 331 aaKnown RBP4.33□□□□□ -1.72
MCF2-201ENST00000338585 FYNP06241 537 aa4.33□□□□□ -1.72
MCF2-201ENST00000338585 USP17L7P0C7H9 530 aa4.33□□□□□ -1.72
MCF2-201ENST00000338585 FGFR3P22607 806 aa4.33□□□□□ -1.72
MCF2-201ENST00000338585 PAX3P23760 479 aa4.33□□□□□ -1.72
MCF2-201ENST00000338585 SDC4P31431 198 aa4.33□□□□□ -1.72
MCF2-201ENST00000338585 RFC2P35250 354 aa4.33□□□□□ -1.72
MCF2-201ENST00000338585 PGFP49763 221 aa4.33□□□□□ -1.72
MCF2-201ENST00000338585 SNX16P57768 344 aa4.33□□□□□ -1.72
MCF2-201ENST00000338585 WDR5P61964 334 aaKnown RBP4.33□□□□□ -1.72
MCF2-201ENST00000338585 TUBB4BP68371 445 aa4.33□□□□□ -1.72
MCF2-201ENST00000338585 GUCY2DQ02846 1103 aa4.33□□□□□ -1.72
MCF2-201ENST00000338585 IFRD2Q12894 506 aaPredicted RBP4.33□□□□□ -1.72
MCF2-201ENST00000338585 KLF1Q13351 362 aaPredicted RBP4.33□□□□□ -1.72
MCF2-201ENST00000338585 SNX1Q13596 522 aa4.33□□□□□ -1.72
MCF2-201ENST00000338585 SMC1AQ14683 1233 aaKnown RBP4.33□□□□□ -1.72
MCF2-201ENST00000338585 CA9Q16790 459 aa4.33□□□□□ -1.72
MCF2-201ENST00000338585 CTXN3Q4LDR2 81 aa4.33□□□□□ -1.72
MCF2-201ENST00000338585 ZC3H12AQ5D1E8 599 aaKnown RBP4.33□□□□□ -1.72
MCF2-201ENST00000338585 RAB41Q5JT25 222 aa4.33□□□□□ -1.72
MCF2-201ENST00000338585 OTUD1Q5VV17 481 aaPredicted RBP4.33□□□□□ -1.72
MCF2-201ENST00000338585 MFSD5Q6N075 450 aa4.33□□□□□ -1.72
MCF2-201ENST00000338585 WDR93Q6P2C0 686 aa4.33□□□□□ -1.72
MCF2-201ENST00000338585 SCYL2Q6P3W7 929 aa4.33□□□□□ -1.72
MCF2-201ENST00000338585 PRSS55Q6UWB4 352 aaPredicted RBP4.33□□□□□ -1.72
MCF2-201ENST00000338585 SPOCD1Q6ZMY3 1216 aa4.33□□□□□ -1.72
MCF2-201ENST00000338585 C16orf59Q7L2K0 433 aa4.33□□□□□ -1.72
MCF2-201ENST00000338585 BHLHA9Q7RTU4 235 aa4.33□□□□□ -1.72
MCF2-201ENST00000338585 UBE2Q1Q7Z7E8 422 aa4.33□□□□□ -1.72
MCF2-201ENST00000338585 DDX42Q86XP3 938 aaKnown RBP eCLIP4.33□□□□□ -1.72
MCF2-201ENST00000338585 ZDHHC17Q8IUH5 632 aa4.33□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms