RNA–Protein interactions for RNA: ENST00000323701.10

USP39-201, Transcript of ubiquitin specific peptidase 39, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP39, Length 2,177 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-201ENST00000323701 ZDHHC17Q8IUH5 632 aa19.29■□□□□ 0.68
USP39-201ENST00000323701 URGCPQ8TCY9 931 aa19.29■□□□□ 0.68
USP39-201ENST00000323701 HAUS1Q96CS2 278 aa19.29■□□□□ 0.68
USP39-201ENST00000323701 ACBD6Q9BR61 282 aa19.29■□□□□ 0.68
USP39-201ENST00000323701 DDX56Q9NY93 547 aaKnown RBP19.29■□□□□ 0.68
USP39-201ENST00000323701 SNX24Q9Y343 169 aa19.29■□□□□ 0.68
USP39-201ENST00000323701 PCDHB7Q9Y5E2 793 aa19.29■□□□□ 0.68
USP39-201ENST00000323701 HHLA1C9JL84 531 aa19.29■□□□□ 0.68
USP39-201ENST00000323701 ATP8B1O43520 1251 aa19.29■□□□□ 0.68
USP39-201ENST00000323701 KRT7P08729 469 aa19.29■□□□□ 0.68
USP39-201ENST00000323701 OR4Q2P0C623 313 aa19.29■□□□□ 0.68
USP39-201ENST00000323701 PCSK1P29120 753 aa19.29■□□□□ 0.68
USP39-201ENST00000323701 SDC4P31431 198 aa19.29■□□□□ 0.68
USP39-201ENST00000323701 ACAP1Q15027 740 aa19.29■□□□□ 0.68
USP39-201ENST00000323701 PPP2R5EQ16537 467 aa19.29■□□□□ 0.68
USP39-201ENST00000323701 TFDP3Q5H9I0 405 aa19.29■□□□□ 0.68
USP39-201ENST00000323701 INTS6LQ5JSJ4 861 aaKnown RBP19.29■□□□□ 0.68
USP39-201ENST00000323701 PRUNE1Q86TP1 453 aa19.29■□□□□ 0.68
USP39-201ENST00000323701 DNAJC5GQ8N7S2 189 aa19.29■□□□□ 0.68
USP39-201ENST00000323701 CMASQ8NFW8 434 aaPredicted RBP19.29■□□□□ 0.68
USP39-201ENST00000323701 B3GALT6Q96L58 329 aa19.29■□□□□ 0.68
USP39-201ENST00000323701 NRDE2Q9H7Z3 1164 aa19.29■□□□□ 0.68
USP39-201ENST00000323701 CYLDQ9NQC7 956 aa19.29■□□□□ 0.68
USP39-201ENST00000323701 UTP11Q9Y3A2 253 aaKnown RBP19.29■□□□□ 0.68
USP39-201ENST00000323701 TANC1Q9C0D5 1861 aa19.28■□□□□ 0.68
USP39-201ENST00000323701 BDNFP23560 247 aa19.28■□□□□ 0.68
USP39-201ENST00000323701 ACADSBP45954 432 aa19.28■□□□□ 0.68
USP39-201ENST00000323701 RPL21P46778 160 aaKnown RBP19.28■□□□□ 0.68
USP39-201ENST00000323701 FNTAP49354 379 aa19.28■□□□□ 0.68
USP39-201ENST00000323701 TKTL1P51854 596 aa19.28■□□□□ 0.68
USP39-201ENST00000323701 MMRN1Q13201 1228 aa19.28■□□□□ 0.68
USP39-201ENST00000323701 HLTFQ14527 1009 aaKnown RBP eCLIP19.28■□□□□ 0.68
USP39-201ENST00000323701 CA9Q16790 459 aa19.28■□□□□ 0.68
USP39-201ENST00000323701 HADHQ16836 314 aaKnown RBP19.28■□□□□ 0.68
USP39-201ENST00000323701 SCYL2Q6P3W7 929 aa19.28■□□□□ 0.68
USP39-201ENST00000323701 KCTD13Q8WZ19 329 aa19.28■□□□□ 0.68
USP39-201ENST00000323701 ELAC1Q9H777 363 aaKnown RBP19.28■□□□□ 0.68
USP39-201ENST00000323701 HPCAL4Q9UM19 191 aa19.28■□□□□ 0.68
USP39-201ENST00000323701 CXCL10P02778 98 aa19.27■□□□□ 0.68
USP39-201ENST00000323701 DYNLT1P63172 113 aa19.27■□□□□ 0.68
USP39-201ENST00000323701 MRPS5P82675 430 aaKnown RBP19.27■□□□□ 0.68
USP39-201ENST00000323701 TAZQ16635 292 aa19.27■□□□□ 0.68
USP39-201ENST00000323701 ZC3H12AQ5D1E8 599 aaKnown RBP19.27■□□□□ 0.68
USP39-201ENST00000323701 METTL23Q86XA0 190 aa19.27■□□□□ 0.68
USP39-201ENST00000323701 DNAI2Q9GZS0 605 aa19.27■□□□□ 0.68
USP39-201ENST00000323701 STAU2Q9NUL3 570 aaKnown RBP eCLIP19.27■□□□□ 0.68
USP39-201ENST00000323701 GRHL1Q9NZI5 618 aa19.27■□□□□ 0.68
USP39-201ENST00000323701 ATP11BQ9Y2G3 1177 aa19.27■□□□□ 0.68
USP39-201ENST00000323701 FAM187AA6NFU0 413 aa19.27■□□□□ 0.68
USP39-201ENST00000323701 DCDC2CA8MYV0 355 aa19.27■□□□□ 0.68
USP39-201ENST00000323701 ARSEP51690 589 aa19.27■□□□□ 0.68
USP39-201ENST00000323701 TRIP13Q15645 432 aaPredicted RBP19.27■□□□□ 0.68
USP39-201ENST00000323701 OTUD1Q5VV17 481 aaPredicted RBP19.27■□□□□ 0.68
USP39-201ENST00000323701 SYPL2Q5VXT5 272 aa19.27■□□□□ 0.68
USP39-201ENST00000323701 EMBQ6PCB8 327 aa19.27■□□□□ 0.68
USP39-201ENST00000323701 LIN28BQ6ZN17 250 aaKnown RBP eCLIP19.27■□□□□ 0.68
USP39-201ENST00000323701 DEFB106AQ8N104 65 aa19.27■□□□□ 0.68
USP39-201ENST00000323701 CENPIQ92674 756 aaPredicted RBP19.27■□□□□ 0.68
USP39-201ENST00000323701 CAVIN3Q969G5 261 aa19.27■□□□□ 0.68
USP39-201ENST00000323701 FAM149B1Q96BN6 582 aa19.27■□□□□ 0.68
USP39-201ENST00000323701 ULBP1Q9BZM6 244 aa19.27■□□□□ 0.68
USP39-201ENST00000323701 DNPEPQ9ULA0 475 aa19.27■□□□□ 0.68
USP39-201ENST00000323701 VWA8A3KMH1 1905 aa19.27■□□□□ 0.67
USP39-201ENST00000323701 YJEFN3A6XGL0 299 aa19.26■□□□□ 0.67
USP39-201ENST00000323701 E7ENQ6 273 aa19.26■□□□□ 0.67
USP39-201ENST00000323701 TP73O15350 636 aa19.26■□□□□ 0.67
USP39-201ENST00000323701 FYNP06241 537 aa19.26■□□□□ 0.67
USP39-201ENST00000323701 PTPN7P35236 360 aa19.26■□□□□ 0.67
USP39-201ENST00000323701 SLC8A3P57103 927 aa19.26■□□□□ 0.67
USP39-201ENST00000323701 SNX16P57768 344 aa19.26■□□□□ 0.67
USP39-201ENST00000323701 COPS2P61201 443 aa19.26■□□□□ 0.67
USP39-201ENST00000323701 CUL1Q13616 776 aa19.26■□□□□ 0.67
USP39-201ENST00000323701 ZDHHC24Q6UX98 284 aa19.26■□□□□ 0.67
USP39-201ENST00000323701 TMEM173Q86WV6 379 aaPredicted RBP19.26■□□□□ 0.67
USP39-201ENST00000323701 KCTD6Q8NC69 237 aa19.26■□□□□ 0.67
USP39-201ENST00000323701 TBCBQ99426 244 aa19.26■□□□□ 0.67
USP39-201ENST00000323701 DDX23Q9BUQ8 820 aaKnown RBP19.26■□□□□ 0.67
USP39-201ENST00000323701 LRRC4Q9HBW1 653 aa19.26■□□□□ 0.67
USP39-201ENST00000323701 ZDHHC18Q9NUE0 388 aa19.26■□□□□ 0.67
USP39-201ENST00000323701 KANSL3Q9P2N6 904 aa19.26■□□□□ 0.67
USP39-201ENST00000323701 TBX21Q9UL17 535 aa19.26■□□□□ 0.67
USP39-201ENST00000323701 PCDHB8Q9UN66 801 aa19.26■□□□□ 0.67
USP39-201ENST00000323701 NLRC5Q86WI3 1866 aa19.26■□□□□ 0.67
USP39-201ENST00000323701 NT5C1B-RDH14C9J2C7 533 aa19.26■□□□□ 0.67
USP39-201ENST00000323701 H3BQF6 201 aa19.26■□□□□ 0.67
USP39-201ENST00000323701 TYMPP19971 482 aa19.26■□□□□ 0.67
USP39-201ENST00000323701 ITGB8P26012 769 aa19.26■□□□□ 0.67
USP39-201ENST00000323701 PTPN9P43378 593 aa19.26■□□□□ 0.67
USP39-201ENST00000323701 KRT17Q04695 432 aa19.26■□□□□ 0.67
USP39-201ENST00000323701 YWHAHQ04917 246 aaPredicted RBP19.26■□□□□ 0.67
USP39-201ENST00000323701 CCNG2Q16589 344 aa19.26■□□□□ 0.67
USP39-201ENST00000323701 ODF2Q5BJF6 829 aa19.26■□□□□ 0.67
USP39-201ENST00000323701 RAB41Q5JT25 222 aa19.26■□□□□ 0.67
USP39-201ENST00000323701 ABI1Q8IZP0 508 aa19.26■□□□□ 0.67
USP39-201ENST00000323701 GLIS1Q8NBF1 620 aa19.26■□□□□ 0.67
USP39-201ENST00000323701 SMARCD1Q96GM5 515 aa19.26■□□□□ 0.67
USP39-201ENST00000323701 FAM193BQ96PV7 902 aaPredicted RBP19.26■□□□□ 0.67
USP39-201ENST00000323701 GPR62Q9BZJ7 368 aa19.26■□□□□ 0.67
USP39-201ENST00000323701 UBXN6Q9BZV1 441 aa19.26■□□□□ 0.67
USP39-201ENST00000323701 C10orf88Q9H8K7 445 aa19.26■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms