RNA–Protein interactions for RNA: ENST00000054666.10

VAMP3-201, Transcript of vesicle associated membrane protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VAMP3, Length 2,205 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAMP3-201ENST00000054666 IFT88Q13099 833 aa8.63□□□□□ -1.03
VAMP3-201ENST00000054666 DPYSL3Q14195 570 aa8.63□□□□□ -1.03
VAMP3-201ENST00000054666 NOMO1Q15155 1222 aa8.63□□□□□ -1.03
VAMP3-201ENST00000054666 FSCN1Q16658 493 aaKnown RBP8.63□□□□□ -1.03
VAMP3-201ENST00000054666 SOWAHAQ2M3V2 549 aa8.63□□□□□ -1.03
VAMP3-201ENST00000054666 CCDC14Q49A88 953 aa8.63□□□□□ -1.03
VAMP3-201ENST00000054666 ALKAL1Q6UXT8 129 aa8.63□□□□□ -1.03
VAMP3-201ENST00000054666 PPP1R21Q6ZMI0 780 aa8.63□□□□□ -1.03
VAMP3-201ENST00000054666 VSIG1Q86XK7 387 aa8.63□□□□□ -1.03
VAMP3-201ENST00000054666 RASAL3Q86YV0 1011 aa8.63□□□□□ -1.03
VAMP3-201ENST00000054666 SRRM1Q8IYB3 904 aaKnown RBP8.63□□□□□ -1.03
VAMP3-201ENST00000054666 ADGRF2Q8IZF7 708 aa8.63□□□□□ -1.03
VAMP3-201ENST00000054666 PDIK1LQ8N165 341 aa8.63□□□□□ -1.03
VAMP3-201ENST00000054666 NME8Q8N427 588 aa8.63□□□□□ -1.03
VAMP3-201ENST00000054666 ANKRD42Q8N9B4 389 aa8.63□□□□□ -1.03
VAMP3-201ENST00000054666 FAM71DQ8N9W8 422 aa8.63□□□□□ -1.03
VAMP3-201ENST00000054666 CCDC197Q8NCU1 140 aa8.63□□□□□ -1.03
VAMP3-201ENST00000054666 SLC35F5Q8WV83 523 aa8.63□□□□□ -1.03
VAMP3-201ENST00000054666 USP6NLQ92738 828 aa8.63□□□□□ -1.03
VAMP3-201ENST00000054666 SEC16BQ96JE7 1060 aa8.63□□□□□ -1.03
VAMP3-201ENST00000054666 RRAGCQ9HB90 399 aa8.63□□□□□ -1.03
VAMP3-201ENST00000054666 CYLDQ9NQC7 956 aa8.63□□□□□ -1.03
VAMP3-201ENST00000054666 KLK14Q9P0G3 267 aa8.63□□□□□ -1.03
VAMP3-201ENST00000054666 SENP1Q9P0U3 644 aa8.63□□□□□ -1.03
VAMP3-201ENST00000054666 DDX20Q9UHI6 824 aaKnown RBP8.63□□□□□ -1.03
VAMP3-201ENST00000054666 DOCK3Q8IZD9 2030 aa8.63□□□□□ -1.03
VAMP3-201ENST00000054666 POC1B-GALNT4F8VUJ3 575 aa8.62□□□□□ -1.03
VAMP3-201ENST00000054666 PIRO00625 290 aa8.62□□□□□ -1.03
VAMP3-201ENST00000054666 TNPO2O14787 897 aaKnown RBP8.62□□□□□ -1.03
VAMP3-201ENST00000054666 ALOX15BO15296 676 aa8.62□□□□□ -1.03
VAMP3-201ENST00000054666 PAPSS1O43252 624 aaPredicted RBP8.62□□□□□ -1.03
VAMP3-201ENST00000054666 CAPN15O75808 1086 aa8.62□□□□□ -1.03
VAMP3-201ENST00000054666 CCDC130P13994 396 aa8.62□□□□□ -1.03
VAMP3-201ENST00000054666 AKR1A1P14550 325 aa8.62□□□□□ -1.03
VAMP3-201ENST00000054666 RPL22P35268 128 aaKnown RBP8.62□□□□□ -1.03
VAMP3-201ENST00000054666 GNL1P36915 607 aaPredicted RBP8.62□□□□□ -1.03
VAMP3-201ENST00000054666 SCNN1AP37088 669 aa8.62□□□□□ -1.03
VAMP3-201ENST00000054666 ADAM17P78536 824 aa8.62□□□□□ -1.03
VAMP3-201ENST00000054666 RNASELQ05823 741 aaKnown RBP8.62□□□□□ -1.03
VAMP3-201ENST00000054666 MMRN1Q13201 1228 aa8.62□□□□□ -1.03
VAMP3-201ENST00000054666 FASTKD3Q14CZ7 662 aaKnown RBP8.62□□□□□ -1.03
VAMP3-201ENST00000054666 CCL14Q16627 93 aa8.62□□□□□ -1.03
VAMP3-201ENST00000054666 QPCTQ16769 361 aa8.62□□□□□ -1.03
VAMP3-201ENST00000054666 SH3PXD2AQ5TCZ1 1133 aa8.62□□□□□ -1.03
VAMP3-201ENST00000054666 TRNP1Q6NT89 227 aa8.62□□□□□ -1.03
VAMP3-201ENST00000054666 TAF2Q6P1X5 1199 aa8.62□□□□□ -1.03
VAMP3-201ENST00000054666 CAPN12Q6ZSI9 719 aa8.62□□□□□ -1.03
VAMP3-201ENST00000054666 TDRPQ86YL5 185 aa8.62□□□□□ -1.03
VAMP3-201ENST00000054666 HACE1Q8IYU2 909 aa8.62□□□□□ -1.03
VAMP3-201ENST00000054666 ANKRD52Q8NB46 1076 aa8.62□□□□□ -1.03
VAMP3-201ENST00000054666 PYROXD1Q8WU10 500 aa8.62□□□□□ -1.03
VAMP3-201ENST00000054666 TMEM40Q8WWA1 233 aa8.62□□□□□ -1.03
VAMP3-201ENST00000054666 CPT1BQ92523 772 aa8.62□□□□□ -1.03
VAMP3-201ENST00000054666 RNF157Q96PX1 679 aa8.62□□□□□ -1.03
VAMP3-201ENST00000054666 ZNF670Q9BS34 389 aa8.62□□□□□ -1.03
VAMP3-201ENST00000054666 CXCL16Q9H2A7 254 aa8.62□□□□□ -1.03
VAMP3-201ENST00000054666 DPEP3Q9H4B8 488 aa8.62□□□□□ -1.03
VAMP3-201ENST00000054666 UBN1Q9NPG3 1134 aa8.62□□□□□ -1.03
VAMP3-201ENST00000054666 GDAP2Q9NXN4 497 aa8.62□□□□□ -1.03
VAMP3-201ENST00000054666 NAALADL1Q9UQQ1 740 aa8.62□□□□□ -1.03
VAMP3-201ENST00000054666 IPPQ9Y573 584 aa8.62□□□□□ -1.03
VAMP3-201ENST00000054666 H0YHG0 523 aa8.62□□□□□ -1.03
VAMP3-201ENST00000054666 ENDOD1O94919 500 aa8.62□□□□□ -1.03
VAMP3-201ENST00000054666 ITGBL1O95965 494 aaPredicted RBP8.62□□□□□ -1.03
VAMP3-201ENST00000054666 ZBED1O96006 694 aa8.62□□□□□ -1.03
VAMP3-201ENST00000054666 PDGFRBP09619 1106 aa8.62□□□□□ -1.03
VAMP3-201ENST00000054666 KRT15P19012 456 aa8.62□□□□□ -1.03
VAMP3-201ENST00000054666 STX2P32856 288 aa8.62□□□□□ -1.03
VAMP3-201ENST00000054666 PTPN9P43378 593 aa8.62□□□□□ -1.03
VAMP3-201ENST00000054666 BCAR1P56945 870 aa8.62□□□□□ -1.03
VAMP3-201ENST00000054666 KLHL38Q2WGJ6 581 aa8.62□□□□□ -1.03
VAMP3-201ENST00000054666 VSTM1Q6UX27 236 aa8.62□□□□□ -1.03
VAMP3-201ENST00000054666 SLC26A9Q7LBE3 791 aa8.62□□□□□ -1.03
VAMP3-201ENST00000054666 RSPH3Q86UC2 560 aa8.62□□□□□ -1.03
VAMP3-201ENST00000054666 ZC3H18Q86VM9 953 aaKnown RBP8.62□□□□□ -1.03
VAMP3-201ENST00000054666 UNC45BQ8IWX7 931 aa8.62□□□□□ -1.03
VAMP3-201ENST00000054666 SCUBE3Q8IX30 993 aa8.62□□□□□ -1.03
VAMP3-201ENST00000054666 MICALL1Q8N3F8 863 aa8.62□□□□□ -1.03
VAMP3-201ENST00000054666 NAT8LQ8N9F0 302 aa8.62□□□□□ -1.03
VAMP3-201ENST00000054666 KBTBD7Q8WVZ9 684 aa8.62□□□□□ -1.03
VAMP3-201ENST00000054666 ZNF317Q96PQ6 595 aaPredicted RBP8.62□□□□□ -1.03
VAMP3-201ENST00000054666 SNRNP25Q9BV90 132 aaKnown RBP8.62□□□□□ -1.03
VAMP3-201ENST00000054666 C10orf88Q9H8K7 445 aa8.62□□□□□ -1.03
VAMP3-201ENST00000054666 GPATCH2LQ9NWQ4 482 aa8.62□□□□□ -1.03
VAMP3-201ENST00000054666 PAK5Q9P286 719 aa8.62□□□□□ -1.03
VAMP3-201ENST00000054666 PSMC3IPQ9P2W1 217 aaPredicted RBP8.62□□□□□ -1.03
VAMP3-201ENST00000054666 SLC24A2Q9UI40 661 aa8.62□□□□□ -1.03
VAMP3-201ENST00000054666 XPO7Q9UIA9 1087 aaKnown RBP8.62□□□□□ -1.03
VAMP3-201ENST00000054666 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP8.61□□□□□ -1.03
VAMP3-201ENST00000054666 ZNF487B1APH4 448 aa8.61□□□□□ -1.03
VAMP3-201ENST00000054666 KPNA6O60684 536 aa8.61□□□□□ -1.03
VAMP3-201ENST00000054666 C6orf222P0C671 652 aaPredicted RBP8.61□□□□□ -1.03
VAMP3-201ENST00000054666 LCP1P13796 627 aa8.61□□□□□ -1.03
VAMP3-201ENST00000054666 LIG3P49916 1009 aa8.61□□□□□ -1.03
VAMP3-201ENST00000054666 ZNF200P98182 395 aaPredicted RBP8.61□□□□□ -1.03
VAMP3-201ENST00000054666 LRRC14Q15048 493 aa8.61□□□□□ -1.03
VAMP3-201ENST00000054666 XKR4Q5GH76 650 aa8.61□□□□□ -1.03
VAMP3-201ENST00000054666 PPP6R3Q5H9R7 873 aaPredicted RBP8.61□□□□□ -1.03
VAMP3-201ENST00000054666 HP1BP3Q5SSJ5 553 aaPredicted RBP8.61□□□□□ -1.03
VAMP3-201ENST00000054666 C1orf228Q6PIY5 440 aa8.61□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms