RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 ARMC2Q8NEN0 867 aa11.17□□□□□ -0.62
USP28-201ENST00000003302 KHSRPQ92945 711 aaKnown RBP eCLIP11.17□□□□□ -0.62
USP28-201ENST00000003302 FAM81BQ96LP2 452 aa11.17□□□□□ -0.62
USP28-201ENST00000003302 INO80BQ9C086 356 aaPredicted RBP11.17□□□□□ -0.62
USP28-201ENST00000003302 MANSC1Q9H8J5 431 aa11.17□□□□□ -0.62
USP28-201ENST00000003302 USP29Q9HBJ7 922 aa11.17□□□□□ -0.62
USP28-201ENST00000003302 MAGED2Q9UNF1 606 aaPredicted RBP11.17□□□□□ -0.62
USP28-201ENST00000003302 SIP14410 1827 aa11.17□□□□□ -0.62
USP28-201ENST00000003302 SSC5DA1L4H1 1573 aa11.16□□□□□ -0.62
USP28-201ENST00000003302 GBE1Q04446 702 aa11.16□□□□□ -0.62
USP28-201ENST00000003302 SCUBE3Q8IX30 993 aa11.16□□□□□ -0.62
USP28-201ENST00000003302 CTAGE3PQ8IX95 158 aa11.16□□□□□ -0.62
USP28-201ENST00000003302 NIF3L1Q9GZT8 377 aa11.16□□□□□ -0.62
USP28-201ENST00000003302 RAB6BQ9NRW1 208 aa11.16□□□□□ -0.62
USP28-201ENST00000003302 CNTN3Q9P232 1028 aa11.16□□□□□ -0.62
USP28-201ENST00000003302 CACNG4Q9UBN1 327 aa11.16□□□□□ -0.62
USP28-201ENST00000003302 TEX264Q9Y6I9 313 aa11.16□□□□□ -0.62
USP28-201ENST00000003302 PFKMP08237 780 aa11.16□□□□□ -0.62
USP28-201ENST00000003302 CAV1Q03135 178 aa11.16□□□□□ -0.62
USP28-201ENST00000003302 KDSRQ06136 332 aa11.16□□□□□ -0.62
USP28-201ENST00000003302 MROH9Q5TGP6 573 aa11.16□□□□□ -0.62
USP28-201ENST00000003302 VWA5B1Q5TIE3 1220 aa11.16□□□□□ -0.62
USP28-201ENST00000003302 CIAPIN1Q6FI81 312 aa11.16□□□□□ -0.62
USP28-201ENST00000003302 ZNF534Q76KX8 674 aa11.16□□□□□ -0.62
USP28-201ENST00000003302 TDRPQ86YL5 185 aa11.16□□□□□ -0.62
USP28-201ENST00000003302 POU5F2Q8N7G0 328 aa11.16□□□□□ -0.62
USP28-201ENST00000003302 PNPLA1Q8N8W4 532 aa11.16□□□□□ -0.62
USP28-201ENST00000003302 KCTD6Q8NC69 237 aa11.16□□□□□ -0.62
USP28-201ENST00000003302 FGD4Q96M96 766 aa11.16□□□□□ -0.62
USP28-201ENST00000003302 FAM49BQ9NUQ9 324 aa11.16□□□□□ -0.62
USP28-201ENST00000003302 USP18Q9UMW8 372 aa11.16□□□□□ -0.62
USP28-201ENST00000003302 HES2Q9Y543 173 aa11.16□□□□□ -0.62
USP28-201ENST00000003302 PSAT1Q9Y617 370 aa11.16□□□□□ -0.62
USP28-201ENST00000003302 SCINQ9Y6U3 715 aa11.16□□□□□ -0.62
USP28-201ENST00000003302 RANBP2P49792 3224 aaKnown RBP11.16□□□□□ -0.62
USP28-201ENST00000003302 TRIM49D1C9J1S8 452 aa11.16□□□□□ -0.62
USP28-201ENST00000003302 GSC2O15499 205 aa11.16□□□□□ -0.62
USP28-201ENST00000003302 APRTP07741 180 aa11.16□□□□□ -0.62
USP28-201ENST00000003302 CDH6P55285 790 aa11.16□□□□□ -0.62
USP28-201ENST00000003302 SNRPFP62306 86 aaKnown RBP11.16□□□□□ -0.62
USP28-201ENST00000003302 TRAF1Q13077 416 aa11.16□□□□□ -0.62
USP28-201ENST00000003302 FAM102AQ5T9C2 384 aaPredicted RBP11.16□□□□□ -0.62
USP28-201ENST00000003302 FBXO16Q8IX29 292 aaPredicted RBP11.16□□□□□ -0.62
USP28-201ENST00000003302 PLD5Q8N7P1 536 aa11.16□□□□□ -0.62
USP28-201ENST00000003302 RBM41Q96IZ5 413 aaKnown RBP11.16□□□□□ -0.62
USP28-201ENST00000003302 ADAMTS5Q9UNA0 930 aa11.16□□□□□ -0.62
USP28-201ENST00000003302 ACTL7BQ9Y614 415 aa11.16□□□□□ -0.62
USP28-201ENST00000003302 ITM2AO43736 263 aa11.15□□□□□ -0.62
USP28-201ENST00000003302 LPXNO60711 386 aa11.15□□□□□ -0.62
USP28-201ENST00000003302 ZMPSTE24O75844 475 aa11.15□□□□□ -0.62
USP28-201ENST00000003302 MICAL2O94851 1124 aa11.15□□□□□ -0.62
USP28-201ENST00000003302 GSRP00390 522 aa11.15□□□□□ -0.62
USP28-201ENST00000003302 ATP5DP30049 168 aa11.15□□□□□ -0.62
USP28-201ENST00000003302 STAT5BP51692 787 aa11.15□□□□□ -0.62
USP28-201ENST00000003302 LACTBP83111 547 aaPredicted RBP11.15□□□□□ -0.62
USP28-201ENST00000003302 VTI1AQ96AJ9 217 aa11.15□□□□□ -0.62
USP28-201ENST00000003302 SKA1Q96BD8 255 aa11.15□□□□□ -0.62
USP28-201ENST00000003302 RSRC1Q96IZ7 334 aaKnown RBP11.15□□□□□ -0.62
USP28-201ENST00000003302 OSBPL1AQ9BXW6 950 aa11.15□□□□□ -0.62
USP28-201ENST00000003302 C17orf75Q9HAS0 396 aa11.15□□□□□ -0.62
USP28-201ENST00000003302 SHOC2Q9UQ13 582 aa11.15□□□□□ -0.62
USP28-201ENST00000003302 RFC5P40937 340 aa11.15□□□□□ -0.62
USP28-201ENST00000003302 INHBEP58166 350 aa11.15□□□□□ -0.62
USP28-201ENST00000003302 YWHAZP63104 245 aaKnown RBP11.15□□□□□ -0.62
USP28-201ENST00000003302 BST1Q10588 318 aa11.15□□□□□ -0.62
USP28-201ENST00000003302 RCN2Q14257 317 aa11.15□□□□□ -0.62
USP28-201ENST00000003302 LRRC36Q1X8D7 754 aa11.15□□□□□ -0.62
USP28-201ENST00000003302 PPP6R3Q5H9R7 873 aaPredicted RBP11.15□□□□□ -0.62
USP28-201ENST00000003302 CDCA2Q69YH5 1023 aaPredicted RBP11.15□□□□□ -0.62
USP28-201ENST00000003302 JADE1Q6IE81 842 aa11.15□□□□□ -0.62
USP28-201ENST00000003302 SCYL2Q6P3W7 929 aa11.15□□□□□ -0.62
USP28-201ENST00000003302 PALM2Q8IXS6 379 aa11.15□□□□□ -0.62
USP28-201ENST00000003302 C7orf31Q8N865 590 aa11.15□□□□□ -0.62
USP28-201ENST00000003302 TMEM35BQ8NCS4 154 aa11.15□□□□□ -0.62
USP28-201ENST00000003302 RSAD2Q8WXG1 361 aa11.15□□□□□ -0.62
USP28-201ENST00000003302 TIPINQ9BVW5 301 aa11.15□□□□□ -0.62
USP28-201ENST00000003302 TEX13BQ9BXU2 312 aa11.15□□□□□ -0.62
USP28-201ENST00000003302 KRT82Q9NSB4 513 aa11.15□□□□□ -0.62
USP28-201ENST00000003302 TTLL3Q9Y4R7 772 aa11.15□□□□□ -0.62
USP28-201ENST00000003302 C2CD2LO14523 706 aa11.15□□□□□ -0.62
USP28-201ENST00000003302 GPD2P43304 727 aa11.15□□□□□ -0.62
USP28-201ENST00000003302 CRYMQ14894 314 aa11.15□□□□□ -0.62
USP28-201ENST00000003302 PRKD1Q15139 912 aaPredicted RBP11.15□□□□□ -0.62
USP28-201ENST00000003302 PMF1Q6P1K2 205 aa11.15□□□□□ -0.62
USP28-201ENST00000003302 DRICH1Q6PGQ1 229 aaPredicted RBP11.15□□□□□ -0.62
USP28-201ENST00000003302 AEBP2Q6ZN18 517 aaPredicted RBP11.15□□□□□ -0.62
USP28-201ENST00000003302 BBS12Q6ZW61 710 aa11.15□□□□□ -0.62
USP28-201ENST00000003302 RPAINQ86UA6 219 aa11.15□□□□□ -0.62
USP28-201ENST00000003302 ARID3BQ8IVW6 561 aaPredicted RBP11.15□□□□□ -0.62
USP28-201ENST00000003302 PPIL6Q8IXY8 311 aa11.15□□□□□ -0.62
USP28-201ENST00000003302 SCYL3Q8IZE3 742 aa11.15□□□□□ -0.62
USP28-201ENST00000003302 VCPIP1Q96JH7 1222 aa11.15□□□□□ -0.62
USP28-201ENST00000003302 SRPK1Q96SB4 655 aaKnown RBP11.15□□□□□ -0.62
USP28-201ENST00000003302 CCDC77Q9BR77 488 aa11.15□□□□□ -0.62
USP28-201ENST00000003302 TSSK1BQ9BXA7 367 aa11.15□□□□□ -0.62
USP28-201ENST00000003302 TRIM6Q9C030 488 aaPredicted RBP11.15□□□□□ -0.62
USP28-201ENST00000003302 E7ESA3 106 aa11.15□□□□□ -0.63
USP28-201ENST00000003302 H3BRJ5 948 aa11.15□□□□□ -0.63
USP28-201ENST00000003302 SOCS7O14512 581 aa11.15□□□□□ -0.63
USP28-201ENST00000003302 ENO1P06733 434 aaKnown RBP11.15□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms