RNA–Protein interactions for RNA: YKL054C

DEF1, Transcript of RNAPII degradation factor, yeastyeast

Gene DEF1, Length 2,217 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
DEF1YKL054C YNL122CP53921 115 aaPredicted RBP3.33□□□□□ -1.88
DEF1YKL054C YRF1-1P0CX20 1796 aa3.33□□□□□ -1.88
DEF1YKL054C YRF1-5P0CX21 1796 aa3.33□□□□□ -1.88
DEF1YKL054C YRF1-8P0CX22 1796 aa3.33□□□□□ -1.88
DEF1YKL054C SWM2P40342 146 aa3.32□□□□□ -1.88
DEF1YKL054C TY1B-DR5P0C2I2 1755 aa3.32□□□□□ -1.88
DEF1YKL054C TY1B-DR6P0C2I3 1755 aa3.32□□□□□ -1.88
DEF1YKL054C TY1B-LR2P0C2I5 1755 aa3.32□□□□□ -1.88
DEF1YKL054C TY1B-LR3P0C2I6 1755 aaKnown RBP3.32□□□□□ -1.88
DEF1YKL054C TY1B-PR1P0C2I9 1755 aaKnown RBP3.32□□□□□ -1.88
DEF1YKL054C TY1B-PR3P0C2J1 1755 aaKnown RBP3.32□□□□□ -1.88
DEF1YKL054C TY1B-JR1P47098 1755 aa3.32□□□□□ -1.88
DEF1YKL054C TY1B-ML2Q03434 1755 aaKnown RBP3.32□□□□□ -1.88
DEF1YKL054C TY1B-ER1Q03612 1755 aa3.32□□□□□ -1.88
DEF1YKL054C TY1B-ML1Q04711 1755 aaKnown RBP3.32□□□□□ -1.88
DEF1YKL054C TY1B-GR2Q12269 1755 aa3.32□□□□□ -1.88
DEF1YKL054C TY1B-OLQ12273 1755 aa3.32□□□□□ -1.88
DEF1YKL054C TY1B-GR3Q12316 1755 aa3.32□□□□□ -1.88
DEF1YKL054C TY1B-PLQ12414 1755 aaKnown RBP3.32□□□□□ -1.88
DEF1YKL054C TY1B-ORQ92393 1755 aa3.32□□□□□ -1.88
DEF1YKL054C COX12Q01519 83 aa3.31□□□□□ -1.88
DEF1YKL054C YIL156W-BQ2V2P4 73 aa3.31□□□□□ -1.88
DEF1YKL054C YOR314WQ12506 109 aa3.31□□□□□ -1.88
DEF1YKL054C DOP1Q03921 1698 aa3.31□□□□□ -1.88
DEF1YKL054C XRN1P22147 1528 aaKnown RBP3.3□□□□□ -1.88
DEF1YKL054C RPS11AP0CX47 156 aaKnown RBP3.3□□□□□ -1.88
DEF1YKL054C RPS11BP0CX48 156 aaKnown RBP3.3□□□□□ -1.88
DEF1YKL054C MRPL31P14063 131 aaPredicted RBP3.3□□□□□ -1.88
DEF1YKL054C YHR173CP38864 112 aa3.29□□□□□ -1.88
DEF1YKL054C YOL013W-AP0C272 63 aaPredicted RBP3.29□□□□□ -1.88
DEF1YKL054C FPR2P32472 135 aa3.29□□□□□ -1.88
DEF1YKL054C AIM19P40502 157 aa3.29□□□□□ -1.88
DEF1YKL054C YJL009WP47078 108 aa3.29□□□□□ -1.88
DEF1YKL054C ECM29P38737 1868 aa3.29□□□□□ -1.88
DEF1YKL054C NOP10Q6Q547 58 aaPredicted RBP3.27□□□□□ -1.89
DEF1YKL054C UFD4P33202 1483 aa3.26□□□□□ -1.89
DEF1YKL054C YFL041W-AQ3E817 63 aa3.26□□□□□ -1.89
DEF1YKL054C SEC16P48415 2195 aaKnown RBP3.26□□□□□ -1.89
DEF1YKL054C YCR001WP25347 104 aa3.25□□□□□ -1.89
DEF1YKL054C MVB12P42939 101 aa3.25□□□□□ -1.89
DEF1YKL054C YGR121W-AQ3E816 71 aa3.25□□□□□ -1.89
DEF1YKL054C STT4P37297 1900 aa3.25□□□□□ -1.89
DEF1YKL054C URB1P34241 1764 aaKnown RBP3.25□□□□□ -1.89
DEF1YKL054C HUG1Q6Q5K6 68 aa3.24□□□□□ -1.89
DEF1YKL054C POL2P21951 2222 aaKnown RBP3.24□□□□□ -1.89
DEF1YKL054C YAL065CO13511 128 aa3.23□□□□□ -1.89
DEF1YKL054C YNL198CP40166 100 aa3.23□□□□□ -1.89
DEF1YKL054C YKL065W-AQ2V2P2 73 aa3.23□□□□□ -1.89
DEF1YKL054C COX19Q3E731 98 aa3.23□□□□□ -1.89
DEF1YKL054C BEM2P39960 2167 aaKnown RBP3.21□□□□□ -1.9
DEF1YKL054C QCR9P22289 66 aa3.2□□□□□ -1.9
DEF1YKL054C SHU1P38751 150 aa3.2□□□□□ -1.9
DEF1YKL054C YAR064WP39563 99 aa3.2□□□□□ -1.9
DEF1YKL054C MGR2Q02889 113 aa3.2□□□□□ -1.9
DEF1YKL054C NTE1Q04958 1679 aa3.19□□□□□ -1.9
DEF1YKL054C YIL086CP40503 102 aa3.19□□□□□ -1.9
DEF1YKL054C YIL134C-AQ45U18 67 aa3.19□□□□□ -1.9
DEF1YKL054C DNF1P32660 1571 aa3.18□□□□□ -1.9
DEF1YKL054C TY1B-DR4Q07793 1604 aa3.17□□□□□ -1.9
DEF1YKL054C YOR072WQ08486 104 aa3.16□□□□□ -1.9
DEF1YKL054C URA2P07259 2214 aaKnown RBP3.15□□□□□ -1.91
DEF1YKL054C YDL022C-AP0C5L6 82 aa3.15□□□□□ -1.91
DEF1YKL054C YGR035W-AQ45U48 73 aa3.15□□□□□ -1.91
DEF1YKL054C BLM10P43583 2143 aa3.14□□□□□ -1.91
DEF1YKL054C YMR007WQ03675 126 aa3.13□□□□□ -1.91
DEF1YKL054C YBR201C-AQ2V2Q3 67 aa3.13□□□□□ -1.91
DEF1YKL054C YMR122W-AQ3E842 84 aa3.13□□□□□ -1.91
DEF1YKL054C TY1B-JR2P47100 1755 aaKnown RBP3.13□□□□□ -1.91
DEF1YKL054C TY1B-ER2Q03619 1755 aa3.13□□□□□ -1.91
DEF1YKL054C TY1B-MR1Q04214 1755 aa3.13□□□□□ -1.91
DEF1YKL054C TY1B-MR2Q04670 1755 aaKnown RBP3.13□□□□□ -1.91
DEF1YKL054C TY1B-LR1Q12088 1755 aaKnown RBP3.13□□□□□ -1.91
DEF1YKL054C TY1B-NL1Q12112 1755 aa3.13□□□□□ -1.91
DEF1YKL054C TY1B-GR1Q12141 1755 aa3.13□□□□□ -1.91
DEF1YKL054C TY1B-BLQ12490 1755 aa3.13□□□□□ -1.91
DEF1YKL054C SMC4Q12267 1418 aa3.13□□□□□ -1.91
DEF1YKL054C UTP10P42945 1769 aaKnown RBP3.12□□□□□ -1.91
DEF1YKL054C ERI1P62651 68 aaKnown RBP3.12□□□□□ -1.91
DEF1YKL054C VMA9Q3E7B6 73 aa3.12□□□□□ -1.91
DEF1YKL054C MOT1P32333 1867 aa3.12□□□□□ -1.91
DEF1YKL054C MYO4P32492 1471 aa3.12□□□□□ -1.91
DEF1YKL054C YJR128WP47162 119 aa3.12□□□□□ -1.91
DEF1YKL054C YNL042W-BQ3E7Z2 85 aa3.12□□□□□ -1.91
DEF1YKL054C RRP5Q05022 1729 aaKnown RBP3.11□□□□□ -1.91
DEF1YKL054C YKL018C-AQ3E7A7 99 aa3.11□□□□□ -1.91
DEF1YKL054C Q0032Q9ZZX7 96 aa3.11□□□□□ -1.91
DEF1YKL054C HHY1P39982 102 aa3.1□□□□□ -1.91
DEF1YKL054C VPS15P22219 1454 aa3.1□□□□□ -1.91
DEF1YKL054C YOR032W-AQ8TGS1 66 aa3.09□□□□□ -1.91
DEF1YKL054C PMD1P32634 1753 aa3.09□□□□□ -1.92
DEF1YKL054C IQG1Q12280 1495 aa3.08□□□□□ -1.92
DEF1YKL054C TY2B-CP25384 1770 aa3.07□□□□□ -1.92
DEF1YKL054C TY2B-DR1Q12472 1770 aa3.07□□□□□ -1.92
DEF1YKL054C TY4B-HP0C2J7 1802 aa3.06□□□□□ -1.92
DEF1YKL054C YIL102C-AQ2V2P5 75 aa3.05□□□□□ -1.92
DEF1YKL054C SGF11Q03067 99 aa3.05□□□□□ -1.92
DEF1YKL054C YIL102CP40488 101 aa3.04□□□□□ -1.92
DEF1YKL054C YOR034C-AQ3E735 80 aa3.03□□□□□ -1.92
DEF1YKL054C PAU7P39545 55 aa3.03□□□□□ -1.93
DEF1YKL054C YSY6P38374 65 aa3.02□□□□□ -1.93
Retrieved 100 of 5,963 RNA–protein pairs in 29.2 ms