RNA–Protein interactions for RNA: ENST00000640499.1

VEGFA-231, Transcript of vascular endothelial growth factor A, human

APPRIS P3 TSL 1 (best) BASIC

Gene VEGFA, Length 1,188 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VEGFA-231	ENST00000640499	LIMA1	Q9UHB6	759 aa	Known RBP	28.24	■■■□□ 2.11
VEGFA-231	ENST00000640499	CCL26	Q9Y258	94 aa		28.24	■■■□□ 2.11
VEGFA-231	ENST00000640499	SOBP	A7XYQ1	873 aa		28.23	■■■□□ 2.11
VEGFA-231	ENST00000640499	BECN2	A8MW95	431 aa		28.23	■■■□□ 2.11
VEGFA-231	ENST00000640499		O00370	1275 aa		28.23	■■■□□ 2.11
VEGFA-231	ENST00000640499	PDGFB	P01127	241 aa	Predicted RBP	28.23	■■■□□ 2.11
VEGFA-231	ENST00000640499	CFH	P08603	1231 aa		28.23	■■■□□ 2.11
VEGFA-231	ENST00000640499	TRIM21	P19474	475 aa	Known RBP	28.23	■■■□□ 2.11
VEGFA-231	ENST00000640499	DDX6	P26196	483 aa	Known RBP eCLIP	28.23	■■■□□ 2.11	5e-8	■□□□□ 10.5
VEGFA-231	ENST00000640499	GRM2	Q14416	872 aa		28.23	■■■□□ 2.11
VEGFA-231	ENST00000640499	ANKRD52	Q8NB46	1076 aa		28.23	■■■□□ 2.11
VEGFA-231	ENST00000640499	C1QTNF1	Q9BXJ1	281 aa		28.23	■■■□□ 2.11
VEGFA-231	ENST00000640499	LRRC10B	A6NIK2	292 aa		28.22	■■■□□ 2.11
VEGFA-231	ENST00000640499	TULP2	O00295	520 aa		28.22	■■■□□ 2.11
VEGFA-231	ENST00000640499	RTN3	O95197	1032 aa	Predicted RBP	28.22	■■■□□ 2.11
VEGFA-231	ENST00000640499	CD19	P15391	556 aa		28.22	■■■□□ 2.11
VEGFA-231	ENST00000640499	GOLGA7B	Q2TAP0	167 aa		28.22	■■■□□ 2.11
VEGFA-231	ENST00000640499	PKDCC	Q504Y2	493 aa		28.22	■■■□□ 2.11
VEGFA-231	ENST00000640499	SGO2	Q562F6	1265 aa		28.22	■■■□□ 2.11
VEGFA-231	ENST00000640499	USP13	Q92995	863 aa	Predicted RBP	28.22	■■■□□ 2.11
VEGFA-231	ENST00000640499	LRFN3	Q9BTN0	628 aa		28.22	■■■□□ 2.11
VEGFA-231	ENST00000640499	DNAI2	Q9GZS0	605 aa		28.22	■■■□□ 2.11
VEGFA-231	ENST00000640499	COMMD8	Q9NX08	183 aa		28.22	■■■□□ 2.11
VEGFA-231	ENST00000640499	EHD2	Q9NZN4	543 aa		28.22	■■■□□ 2.11
VEGFA-231	ENST00000640499	TRPM5	Q9NZQ8	1165 aa		28.22	■■■□□ 2.11
VEGFA-231	ENST00000640499	CHORDC1	Q9UHD1	332 aa	Predicted RBP	28.22	■■■□□ 2.11
VEGFA-231	ENST00000640499	TSPAN16	Q9UKR8	245 aa		28.22	■■■□□ 2.11
VEGFA-231	ENST00000640499	KIAA1257	Q9ULG3	409 aa		28.22	■■■□□ 2.11
VEGFA-231	ENST00000640499	COL4A3	Q01955	1670 aa		28.22	■■■□□ 2.11
VEGFA-231	ENST00000640499	LETM1	O95202	739 aa	Predicted RBP	28.21	■■■□□ 2.11
VEGFA-231	ENST00000640499	ZDHHC11B	P0C7U3	371 aa		28.21	■■■□□ 2.11
VEGFA-231	ENST00000640499	ATP1A3	P13637	1013 aa		28.21	■■■□□ 2.11
VEGFA-231	ENST00000640499	ZXDB	P98169	803 aa		28.21	■■■□□ 2.11
VEGFA-231	ENST00000640499	IQCB1	Q15051	598 aa		28.21	■■■□□ 2.11
VEGFA-231	ENST00000640499	TMEM31	Q5JXX7	168 aa		28.21	■■■□□ 2.11
VEGFA-231	ENST00000640499	HFE2	Q6ZVN8	426 aa		28.21	■■■□□ 2.11
VEGFA-231	ENST00000640499	MFSD6L	Q8IWD5	586 aa		28.21	■■■□□ 2.11
VEGFA-231	ENST00000640499	ARL14EP	Q8N8R7	260 aa	Predicted RBP	28.21	■■■□□ 2.11
VEGFA-231	ENST00000640499	RNF38	Q9H0F5	515 aa		28.21	■■■□□ 2.11
VEGFA-231	ENST00000640499	PNPLA8	Q9NP80	782 aa		28.21	■■■□□ 2.11
VEGFA-231	ENST00000640499	ACP6	Q9NPH0	428 aa		28.21	■■■□□ 2.11
VEGFA-231	ENST00000640499	KRBA1	A5PL33	1030 aa		28.2	■■■□□ 2.1
VEGFA-231	ENST00000640499	PSMC3	P17980	439 aa		28.2	■■■□□ 2.1
VEGFA-231	ENST00000640499	BRD2	P25440	801 aa	Known RBP	28.2	■■■□□ 2.1
VEGFA-231	ENST00000640499	COPB1	P53618	953 aa	Known RBP	28.2	■■■□□ 2.1
VEGFA-231	ENST00000640499	MFAP3	P55082	362 aa		28.2	■■■□□ 2.1
VEGFA-231	ENST00000640499	ARHGAP44	Q17R89	818 aa		28.2	■■■□□ 2.1
VEGFA-231	ENST00000640499	LCLAT1	Q6UWP7	414 aa		28.2	■■■□□ 2.1
VEGFA-231	ENST00000640499	ENOSF1	Q7L5Y1	443 aa		28.2	■■■□□ 2.1
VEGFA-231	ENST00000640499	UBA3	Q8TBC4	463 aa		28.2	■■■□□ 2.1
VEGFA-231	ENST00000640499	SHC3	Q92529	594 aa		28.2	■■■□□ 2.1
VEGFA-231	ENST00000640499	FBXO32	Q969P5	355 aa		28.2	■■■□□ 2.1
VEGFA-231	ENST00000640499	UBXN6	Q9BZV1	441 aa		28.2	■■■□□ 2.1
VEGFA-231	ENST00000640499	TRPC7	Q9HCX4	862 aa		28.2	■■■□□ 2.1
VEGFA-231	ENST00000640499	GMIP	Q9P107	970 aa		28.2	■■■□□ 2.1
VEGFA-231	ENST00000640499	WNT16	Q9UBV4	365 aa		28.2	■■■□□ 2.1
VEGFA-231	ENST00000640499	ZMYM5	Q9UJ78	669 aa		28.2	■■■□□ 2.1
VEGFA-231	ENST00000640499	USP3	Q9Y6I4	520 aa		28.2	■■■□□ 2.1
VEGFA-231	ENST00000640499	ARNTL	O00327	626 aa		28.19	■■■□□ 2.1
VEGFA-231	ENST00000640499	OLFM2	O95897	454 aa		28.19	■■■□□ 2.1
VEGFA-231	ENST00000640499	PPP3CC	P48454	512 aa		28.19	■■■□□ 2.1
VEGFA-231	ENST00000640499	KLK7	P49862	253 aa		28.19	■■■□□ 2.1
VEGFA-231	ENST00000640499	KIF11	P52732	1056 aa		28.19	■■■□□ 2.1
VEGFA-231	ENST00000640499	PDE4C	Q08493	712 aa		28.19	■■■□□ 2.1
VEGFA-231	ENST00000640499	FCHO2	Q0JRZ9	810 aa		28.19	■■■□□ 2.1
VEGFA-231	ENST00000640499	ZSCAN23	Q3MJ62	389 aa		28.19	■■■□□ 2.1
VEGFA-231	ENST00000640499	SNX30	Q5VWJ9	437 aa		28.19	■■■□□ 2.1
VEGFA-231	ENST00000640499	BMP8A	Q7Z5Y6	402 aa		28.19	■■■□□ 2.1
VEGFA-231	ENST00000640499	PIGZ	Q86VD9	579 aa		28.19	■■■□□ 2.1
VEGFA-231	ENST00000640499	E2F7	Q96AV8	911 aa		28.19	■■■□□ 2.1
VEGFA-231	ENST00000640499	SLITRK1	Q96PX8	696 aa		28.19	■■■□□ 2.1
VEGFA-231	ENST00000640499	NAT10	Q9H0A0	1025 aa	Known RBP	28.19	■■■□□ 2.1
VEGFA-231	ENST00000640499	OBP2A	Q9NY56	170 aa		28.19	■■■□□ 2.1
VEGFA-231	ENST00000640499	DNAJC12	Q9UKB3	198 aa		28.19	■■■□□ 2.1
VEGFA-231	ENST00000640499	WDR3	Q9UNX4	943 aa	Known RBP eCLIP	28.19	■■■□□ 2.1
VEGFA-231	ENST00000640499	COL4A2	P08572	1712 aa		28.18	■■■□□ 2.1
VEGFA-231	ENST00000640499	PRR33	A8MZF0	331 aa		28.18	■■■□□ 2.1
VEGFA-231	ENST00000640499	GABBR2	O75899	941 aa		28.18	■■■□□ 2.1
VEGFA-231	ENST00000640499	OAS1	P00973	400 aa	Known RBP	28.18	■■■□□ 2.1
VEGFA-231	ENST00000640499	KRT5	P13647	590 aa		28.18	■■■□□ 2.1
VEGFA-231	ENST00000640499	ZNF165	P49910	485 aa		28.18	■■■□□ 2.1
VEGFA-231	ENST00000640499	CNGA2	Q16280	664 aa		28.18	■■■□□ 2.1
VEGFA-231	ENST00000640499	SKOR2	Q2VWA4	1001 aa	Predicted RBP	28.18	■■■□□ 2.1
VEGFA-231	ENST00000640499	RAB41	Q5JT25	222 aa		28.18	■■■□□ 2.1
VEGFA-231	ENST00000640499	KLHDC7A	Q5VTJ3	777 aa		28.18	■■■□□ 2.1
VEGFA-231	ENST00000640499	DEPDC1B	Q8WUY9	529 aa		28.18	■■■□□ 2.1
VEGFA-231	ENST00000640499	OVCA2	Q8WZ82	227 aa		28.18	■■■□□ 2.1
VEGFA-231	ENST00000640499	TRMT61B	Q9BVS5	477 aa	Known RBP	28.18	■■■□□ 2.1
VEGFA-231	ENST00000640499	NAA15	Q9BXJ9	866 aa	Known RBP	28.18	■■■□□ 2.1
VEGFA-231	ENST00000640499	TDP1	Q9NUW8	608 aa		28.18	■■■□□ 2.1
VEGFA-231	ENST00000640499	OSER1	Q9NX31	292 aa		28.18	■■■□□ 2.1
VEGFA-231	ENST00000640499	SCML2	Q9UQR0	700 aa		28.18	■■■□□ 2.1
VEGFA-231	ENST00000640499	KIF26A	Q9ULI4	1882 aa	Predicted RBP	28.17	■■■□□ 2.1
VEGFA-231	ENST00000640499	TRAV19	A0A0A6YYK7	116 aa		28.17	■■■□□ 2.1
VEGFA-231	ENST00000640499	PES1	O00541	588 aa	Known RBP	28.17	■■■□□ 2.1
VEGFA-231	ENST00000640499	HDC	P19113	662 aa		28.17	■■■□□ 2.1
VEGFA-231	ENST00000640499	AVPR1A	P37288	418 aa		28.17	■■■□□ 2.1
VEGFA-231	ENST00000640499	ZNF268	Q14587	947 aa	Predicted RBP	28.17	■■■□□ 2.1
VEGFA-231	ENST00000640499	CELF5	Q8N6W0	485 aa	Known RBP	28.17	■■■□□ 2.1
VEGFA-231	ENST00000640499	NMUR1	Q9HB89	426 aa		28.17	■■■□□ 2.1

Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms