RNA–Protein interactions for RNA: ENST00000637871.1

CLN3-263, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,606 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-263ENST00000637871 EIF3HO15372 352 aaKnown RBP eCLIP19.27■□□□□ 0.68
CLN3-263ENST00000637871 MGEA5O60502 916 aa19.27■□□□□ 0.68
CLN3-263ENST00000637871 KCNE1P15382 129 aa19.27■□□□□ 0.68
CLN3-263ENST00000637871 IBSPP21815 317 aaPredicted RBP19.27■□□□□ 0.68
CLN3-263ENST00000637871 IVDP26440 423 aa19.27■□□□□ 0.68
CLN3-263ENST00000637871 RFC1P35251 1148 aaPredicted RBP19.27■□□□□ 0.68
CLN3-263ENST00000637871 ADCY8P40145 1251 aa19.27■□□□□ 0.68
CLN3-263ENST00000637871 SNX1Q13596 522 aa19.27■□□□□ 0.68
CLN3-263ENST00000637871 TAZQ16635 292 aa19.27■□□□□ 0.68
CLN3-263ENST00000637871 PLEKHG4Q58EX7 1191 aa19.27■□□□□ 0.68
CLN3-263ENST00000637871 RNF25Q96BH1 459 aaPredicted RBP19.27■□□□□ 0.68
CLN3-263ENST00000637871 CPXM1Q96SM3 734 aa19.27■□□□□ 0.68
CLN3-263ENST00000637871 HEMGNQ9BXL5 484 aa19.27■□□□□ 0.68
CLN3-263ENST00000637871 IL23AQ9NPF7 189 aa19.27■□□□□ 0.68
CLN3-263ENST00000637871 SNTG2Q9NY99 539 aa19.27■□□□□ 0.68
CLN3-263ENST00000637871 ANAPC5Q9UJX4 755 aa19.27■□□□□ 0.68
CLN3-263ENST00000637871 ERICH4A6NGS2 130 aa19.26■□□□□ 0.67
CLN3-263ENST00000637871 LIASO43766 372 aa19.26■□□□□ 0.67
CLN3-263ENST00000637871 ITGAVP06756 1048 aa19.26■□□□□ 0.67
CLN3-263ENST00000637871 SCNN1AP37088 669 aa19.26■□□□□ 0.67
CLN3-263ENST00000637871 CDKN2BP42772 138 aa19.26■□□□□ 0.67
CLN3-263ENST00000637871 OGDHQ02218 1023 aa19.26■□□□□ 0.67
CLN3-263ENST00000637871 CYP4A22Q5TCH4 519 aa19.26■□□□□ 0.67
CLN3-263ENST00000637871 ARHGAP17Q68EM7 881 aa19.26■□□□□ 0.67
CLN3-263ENST00000637871 MFSD7Q6UXD7 560 aa19.26■□□□□ 0.67
CLN3-263ENST00000637871 LINC01599Q8WXQ3 324 aa19.26■□□□□ 0.67
CLN3-263ENST00000637871 TWNKQ96RR1 684 aa19.26■□□□□ 0.67
CLN3-263ENST00000637871 CNPY3Q9BT09 278 aa19.26■□□□□ 0.67
CLN3-263ENST00000637871 HESX1Q9UBX0 185 aa19.26■□□□□ 0.67
CLN3-263ENST00000637871 PIN4Q9Y237 131 aaKnown RBP19.26■□□□□ 0.67
CLN3-263ENST00000637871 RALGAPA2Q2PPJ7 1873 aa19.26■□□□□ 0.67
CLN3-263ENST00000637871 GOLGA8SH3BPF8 625 aa19.25■□□□□ 0.67
CLN3-263ENST00000637871 SMAPO00193 183 aa19.25■□□□□ 0.67
CLN3-263ENST00000637871 RFC2P35250 354 aa19.25■□□□□ 0.67
CLN3-263ENST00000637871 ZNF143P52747 638 aaPredicted RBP19.25■□□□□ 0.67
CLN3-263ENST00000637871 GNGT1P63211 74 aa19.25■□□□□ 0.67
CLN3-263ENST00000637871 PPIGQ13427 754 aaKnown RBP eCLIP19.25■□□□□ 0.676e-7■■□□□ 11.8
CLN3-263ENST00000637871 LRRC31Q6UY01 552 aa19.25■□□□□ 0.67
CLN3-263ENST00000637871 DPH6Q7L8W6 267 aa19.25■□□□□ 0.67
CLN3-263ENST00000637871 OTOP2Q7RTS6 562 aa19.25■□□□□ 0.67
CLN3-263ENST00000637871 VSIG1Q86XK7 387 aa19.25■□□□□ 0.67
CLN3-263ENST00000637871 GDAP2Q9NXN4 497 aa19.25■□□□□ 0.67
CLN3-263ENST00000637871 PRDM4Q9UKN5 801 aa19.25■□□□□ 0.67
CLN3-263ENST00000637871 MICAL3Q7RTP6 2002 aa19.25■□□□□ 0.67
CLN3-263ENST00000637871 CITO14578 2027 aa19.25■□□□□ 0.67
CLN3-263ENST00000637871 LRRD1A4D1F6 860 aa19.25■□□□□ 0.67
CLN3-263ENST00000637871 RIPK2O43353 540 aa19.25■□□□□ 0.67
CLN3-263ENST00000637871 AGTP01019 485 aa19.25■□□□□ 0.67
CLN3-263ENST00000637871 ERBB2P04626 1255 aa19.25■□□□□ 0.67
CLN3-263ENST00000637871 ATP5DP30049 168 aa19.25■□□□□ 0.67
CLN3-263ENST00000637871 MDH1P40925 334 aaKnown RBP19.25■□□□□ 0.67
CLN3-263ENST00000637871 SLC25A11Q02978 314 aaKnown RBP19.25■□□□□ 0.67
CLN3-263ENST00000637871 KCTD16Q68DU8 428 aa19.25■□□□□ 0.67
CLN3-263ENST00000637871 ARCQ7LC44 396 aa19.25■□□□□ 0.67
CLN3-263ENST00000637871 GSTA5Q7RTV2 222 aa19.25■□□□□ 0.67
CLN3-263ENST00000637871 PCGF5Q86SE9 256 aa19.25■□□□□ 0.67
CLN3-263ENST00000637871 CMASQ8NFW8 434 aaPredicted RBP19.25■□□□□ 0.67
CLN3-263ENST00000637871 SEPT8Q92599 483 aa19.25■□□□□ 0.67
CLN3-263ENST00000637871 TLCD1Q96CP7 247 aa19.25■□□□□ 0.67
CLN3-263ENST00000637871 ZMYND15Q9H091 742 aa19.25■□□□□ 0.67
CLN3-263ENST00000637871 EPB41L4BQ9H329 900 aa19.25■□□□□ 0.67
CLN3-263ENST00000637871 METTL5Q9NRN9 209 aaKnown RBP19.25■□□□□ 0.67
CLN3-263ENST00000637871 CYTH4Q9UIA0 394 aa19.25■□□□□ 0.67
CLN3-263ENST00000637871 TSPAN16Q9UKR8 245 aa19.25■□□□□ 0.67
CLN3-263ENST00000637871 R3HDM2Q9Y2K5 976 aaKnown RBP19.25■□□□□ 0.67
CLN3-263ENST00000637871 PIRO00625 290 aa19.24■□□□□ 0.67
CLN3-263ENST00000637871 DPYSL4O14531 572 aa19.24■□□□□ 0.67
CLN3-263ENST00000637871 GPR182O15218 404 aa19.24■□□□□ 0.67
CLN3-263ENST00000637871 LRCH4O75427 683 aa19.24■□□□□ 0.67
CLN3-263ENST00000637871 GJB6O95452 261 aa19.24■□□□□ 0.67
CLN3-263ENST00000637871 GPD1P21695 349 aa19.24■□□□□ 0.67
CLN3-263ENST00000637871 KLRC2P26717 231 aa19.24■□□□□ 0.67
CLN3-263ENST00000637871 GJC1P36383 396 aa19.24■□□□□ 0.67
CLN3-263ENST00000637871 VCPP55072 806 aaKnown RBP19.24■□□□□ 0.67
CLN3-263ENST00000637871 PPP2R2AP63151 447 aa19.24■□□□□ 0.67
CLN3-263ENST00000637871 C9orf57Q5W0N0 161 aa19.24■□□□□ 0.67
CLN3-263ENST00000637871 BBS12Q6ZW61 710 aa19.24■□□□□ 0.67
CLN3-263ENST00000637871 HACE1Q8IYU2 909 aa19.24■□□□□ 0.67
CLN3-263ENST00000637871 CRYBG2Q8N1P7 616 aa19.24■□□□□ 0.67
CLN3-263ENST00000637871 ATG4AQ8WYN0 398 aa19.24■□□□□ 0.67
CLN3-263ENST00000637871 HERPUD2Q9BSE4 406 aa19.24■□□□□ 0.67
CLN3-263ENST00000637871 SLC4A5Q9BY07 1137 aa19.24■□□□□ 0.67
CLN3-263ENST00000637871 PHACTR1Q9C0D0 580 aa19.24■□□□□ 0.67
CLN3-263ENST00000637871 RSAD1Q9HA92 442 aa19.24■□□□□ 0.67
CLN3-263ENST00000637871 ZNF148Q9UQR1 794 aa19.24■□□□□ 0.67
CLN3-263ENST00000637871 SNX9Q9Y5X1 595 aa19.24■□□□□ 0.67
CLN3-263ENST00000637871 SQORQ9Y6N5 450 aa19.24■□□□□ 0.67
CLN3-263ENST00000637871 RECQL4O94761 1208 aa19.23■□□□□ 0.67
CLN3-263ENST00000637871 PARNO95453 639 aaKnown RBP19.23■□□□□ 0.67
CLN3-263ENST00000637871 KDELR1P24390 212 aa19.23■□□□□ 0.67
CLN3-263ENST00000637871 ITGA8P53708 1063 aa19.23■□□□□ 0.67
CLN3-263ENST00000637871 HNRNPH2P55795 449 aaKnown RBP19.23■□□□□ 0.67
CLN3-263ENST00000637871 SLC29A2Q14542 456 aa19.23■□□□□ 0.67
CLN3-263ENST00000637871 SV2CQ496J9 727 aa19.23■□□□□ 0.67
CLN3-263ENST00000637871 PKDCCQ504Y2 493 aa19.23■□□□□ 0.67
CLN3-263ENST00000637871 TMEM240Q5SV17 173 aa19.23■□□□□ 0.67
CLN3-263ENST00000637871 C9orf50Q5SZB4 431 aa19.23■□□□□ 0.67
CLN3-263ENST00000637871 CNKSR3Q6P9H4 555 aa19.23■□□□□ 0.67
CLN3-263ENST00000637871 TMEM110Q86TL2 294 aa19.23■□□□□ 0.67
CLN3-263ENST00000637871 RTN4RL1Q86UN2 441 aaPredicted RBP19.23■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms