RNA–Protein interactions for RNA: ENST00000637578.1

CLN3-260, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,577 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-260ENST00000637578 DMAP1Q9NPF5 467 aaPredicted RBP20.42■□□□□ 0.86
CLN3-260ENST00000637578 HPS4Q9NQG7 708 aa20.42■□□□□ 0.86
CLN3-260ENST00000637578 UTP3Q9NQZ2 479 aaKnown RBP eCLIP20.42■□□□□ 0.866e-9■■■■■ 134.6
CLN3-260ENST00000637578 NDRG2Q9UN36 371 aaKnown RBP20.42■□□□□ 0.86
CLN3-260ENST00000637578 ARHGAP26Q9UNA1 814 aa20.42■□□□□ 0.86
CLN3-260ENST00000637578 FAM92AA1XBS5 289 aa20.41■□□□□ 0.86
CLN3-260ENST00000637578 RTN3O95197 1032 aaPredicted RBP20.41■□□□□ 0.86
CLN3-260ENST00000637578 OLFM2O95897 454 aa20.41■□□□□ 0.86
CLN3-260ENST00000637578 CHRNB1P11230 501 aa20.41■□□□□ 0.86
CLN3-260ENST00000637578 TAF10Q12962 218 aa20.41■□□□□ 0.86
CLN3-260ENST00000637578 USP4Q13107 963 aa20.41■□□□□ 0.86
CLN3-260ENST00000637578 ORC1Q13415 861 aa20.41■□□□□ 0.86
CLN3-260ENST00000637578 CBWD6Q4V339 395 aa20.41■□□□□ 0.86
CLN3-260ENST00000637578 CBWD3Q5JTY5 395 aa20.41■□□□□ 0.86
CLN3-260ENST00000637578 CBWD5Q5RIA9 395 aa20.41■□□□□ 0.86
CLN3-260ENST00000637578 TTI2Q6NXR4 508 aa20.41■□□□□ 0.86
CLN3-260ENST00000637578 TXNDC11Q6PKC3 985 aa20.41■□□□□ 0.86
CLN3-260ENST00000637578 FILIP1Q7Z7B0 1213 aa20.41■□□□□ 0.86
CLN3-260ENST00000637578 C12orf29Q8N999 325 aa20.41■□□□□ 0.86
CLN3-260ENST00000637578 CCDC150Q8NCX0 1101 aa20.41■□□□□ 0.86
CLN3-260ENST00000637578 SLC2A14Q8TDB8 520 aa20.41■□□□□ 0.86
CLN3-260ENST00000637578 OVCA2Q8WZ82 227 aa20.41■□□□□ 0.86
CLN3-260ENST00000637578 SLC35C1Q96A29 364 aa20.41■□□□□ 0.86
CLN3-260ENST00000637578 CEP63Q96MT8 703 aa20.41■□□□□ 0.86
CLN3-260ENST00000637578 HNRNPABQ99729 332 aaKnown RBP20.41■□□□□ 0.86
CLN3-260ENST00000637578 SMOQ99835 787 aa20.41■□□□□ 0.86
CLN3-260ENST00000637578 MED10Q9BTT4 135 aa20.41■□□□□ 0.86
CLN3-260ENST00000637578 NT5C1AQ9BXI3 368 aa20.41■□□□□ 0.86
CLN3-260ENST00000637578 CHRDQ9H2X0 955 aa20.41■□□□□ 0.86
CLN3-260ENST00000637578 FAM124BQ9H5Z6 455 aaPredicted RBP20.41■□□□□ 0.86
CLN3-260ENST00000637578 COMMD8Q9NX08 183 aa20.41■□□□□ 0.86
CLN3-260ENST00000637578 FBXO4Q9UKT5 387 aa20.41■□□□□ 0.86
CLN3-260ENST00000637578 AP1G2O75843 785 aa20.4■□□□□ 0.86
CLN3-260ENST00000637578 BEST1O76090 585 aa20.4■□□□□ 0.86
CLN3-260ENST00000637578 OAS1P00973 400 aaKnown RBP20.4■□□□□ 0.86
CLN3-260ENST00000637578 CKMP06732 381 aa20.4■□□□□ 0.86
CLN3-260ENST00000637578 SP9P0CG40 484 aa20.4■□□□□ 0.86
CLN3-260ENST00000637578 CCDC130P13994 396 aa20.4■□□□□ 0.86
CLN3-260ENST00000637578 YWHAQP27348 245 aa20.4■□□□□ 0.86
CLN3-260ENST00000637578 RUNX3Q13761 415 aa20.4■□□□□ 0.86
CLN3-260ENST00000637578 SKOR2Q2VWA4 1001 aaPredicted RBP20.4■□□□□ 0.86
CLN3-260ENST00000637578 ZNF528Q3MIS6 628 aa20.4■□□□□ 0.86
CLN3-260ENST00000637578 DPCR1Q3MIW9 517 aa20.4■□□□□ 0.86
CLN3-260ENST00000637578 WDR44Q5JSH3 913 aa20.4■□□□□ 0.86
CLN3-260ENST00000637578 SNX30Q5VWJ9 437 aa20.4■□□□□ 0.86
CLN3-260ENST00000637578 FRMD5Q7Z6J6 570 aa20.4■□□□□ 0.86
CLN3-260ENST00000637578 SLITRK1Q96PX8 696 aa20.4■□□□□ 0.86
CLN3-260ENST00000637578 IER2Q9BTL4 223 aa20.4■□□□□ 0.86
CLN3-260ENST00000637578 LMAN1LQ9HAT1 526 aa20.4■□□□□ 0.86
CLN3-260ENST00000637578 KRT82Q9NSB4 513 aa20.4■□□□□ 0.86
CLN3-260ENST00000637578 SPATA6Q9NWH7 488 aaPredicted RBP20.4■□□□□ 0.86
CLN3-260ENST00000637578 ARMCX3Q9UH62 379 aaPredicted RBP20.4■□□□□ 0.86
CLN3-260ENST00000637578 OTOL1A6NHN0 477 aaPredicted RBP20.39■□□□□ 0.85
CLN3-260ENST00000637578 SLC7A9P82251 487 aa20.39■□□□□ 0.85
CLN3-260ENST00000637578 ZXDBP98169 803 aa20.39■□□□□ 0.85
CLN3-260ENST00000637578 PDGFRLQ15198 375 aa20.39■□□□□ 0.85
CLN3-260ENST00000637578 KIAA1958Q8N8K9 716 aa20.39■□□□□ 0.85
CLN3-260ENST00000637578 SCAMP5Q8TAC9 235 aa20.39■□□□□ 0.85
CLN3-260ENST00000637578 TTC8Q8TAM2 541 aa20.39■□□□□ 0.85
CLN3-260ENST00000637578 CHFRQ96EP1 664 aa20.39■□□□□ 0.85
CLN3-260ENST00000637578 RNF38Q9H0F5 515 aa20.39■□□□□ 0.85
CLN3-260ENST00000637578 METTL14Q9HCE5 456 aaKnown RBP20.39■□□□□ 0.85
CLN3-260ENST00000637578 FAM49BQ9NUQ9 324 aa20.39■□□□□ 0.85
CLN3-260ENST00000637578 CTNND2Q9UQB3 1225 aa20.39■□□□□ 0.85
CLN3-260ENST00000637578 MYO15AQ9UKN7 3530 aa20.39■□□□□ 0.85
CLN3-260ENST00000637578 PMM2O15305 246 aa20.38■□□□□ 0.85
CLN3-260ENST00000637578 SLC5A3P53794 718 aa20.38■□□□□ 0.85
CLN3-260ENST00000637578 MTAPQ13126 283 aa20.38■□□□□ 0.85
CLN3-260ENST00000637578 MTF1Q14872 753 aa20.38■□□□□ 0.85
CLN3-260ENST00000637578 DCAF17Q5H9S7 520 aaPredicted RBP20.38■□□□□ 0.85
CLN3-260ENST00000637578 TCERG1LQ5VWI1 586 aa20.38■□□□□ 0.85
CLN3-260ENST00000637578 TRIM68Q6AZZ1 485 aa20.38■□□□□ 0.85
CLN3-260ENST00000637578 CC2D1AQ6P1N0 951 aaPredicted RBP20.38■□□□□ 0.85
CLN3-260ENST00000637578 TTC39CQ8N584 583 aa20.38■□□□□ 0.85
CLN3-260ENST00000637578 MLKLQ8NB16 471 aa20.38■□□□□ 0.85
CLN3-260ENST00000637578 PDZD8Q8NEN9 1154 aa20.38■□□□□ 0.85
CLN3-260ENST00000637578 SH3RF2Q8TEC5 729 aa20.38■□□□□ 0.85
CLN3-260ENST00000637578 OSCP1Q8WVF1 389 aa20.38■□□□□ 0.85
CLN3-260ENST00000637578 NELFBQ8WX92 580 aa20.38■□□□□ 0.85
CLN3-260ENST00000637578 TATDN2Q93075 761 aa20.38■□□□□ 0.85
CLN3-260ENST00000637578 EBF3Q9H4W6 596 aa20.38■□□□□ 0.85
CLN3-260ENST00000637578 VPS13AQ96RL7 3174 aa20.38■□□□□ 0.85
CLN3-260ENST00000637578 ZNF638Q14966 1978 aaKnown RBP20.38■□□□□ 0.85
CLN3-260ENST00000637578 USP34Q70CQ2 3546 aa20.38■□□□□ 0.85
CLN3-260ENST00000637578 LAMTOR5O43504 91 aa20.38■□□□□ 0.85
CLN3-260ENST00000637578 ZDHHC11BP0C7U3 371 aa20.38■□□□□ 0.85
CLN3-260ENST00000637578 TRIM21P19474 475 aaKnown RBP20.38■□□□□ 0.85
CLN3-260ENST00000637578 PAK1Q13153 545 aa20.38■□□□□ 0.85
CLN3-260ENST00000637578 NELL1Q92832 810 aa20.38■□□□□ 0.85
CLN3-260ENST00000637578 CYFIP2Q96F07 1278 aa20.38■□□□□ 0.85
CLN3-260ENST00000637578 PRMT8Q9NR22 394 aaPredicted RBP20.38■□□□□ 0.85
CLN3-260ENST00000637578 HHLA1C9JL84 531 aa20.37■□□□□ 0.85
CLN3-260ENST00000637578 ARSAP15289 507 aa20.37■□□□□ 0.85
CLN3-260ENST00000637578 CD58P19256 250 aa20.37■□□□□ 0.85
CLN3-260ENST00000637578 CCINQ13939 588 aa20.37■□□□□ 0.85
CLN3-260ENST00000637578 SASS6Q6UVJ0 657 aa20.37■□□□□ 0.85
CLN3-260ENST00000637578 CLEC20AQ6ZU45 233 aa20.37■□□□□ 0.85
CLN3-260ENST00000637578 FBXO32Q969P5 355 aa20.37■□□□□ 0.85
CLN3-260ENST00000637578 ARID3AQ99856 593 aa20.37■□□□□ 0.85
CLN3-260ENST00000637578 CISHQ9NSE2 258 aa20.37■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 58.9 ms