RNA–Protein interactions for RNA: ENST00000636853.1

CLN3-251, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,289 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-251ENST00000636853 PTGESO14684 152 aa16.39■□□□□ 0.21
CLN3-251ENST00000636853 IFNB1P01574 187 aa16.39■□□□□ 0.21
CLN3-251ENST00000636853 PCK1P35558 622 aa16.39■□□□□ 0.21
CLN3-251ENST00000636853 FCGRTP55899 365 aa16.39■□□□□ 0.21
CLN3-251ENST00000636853 PPP2R2AP63151 447 aa16.39■□□□□ 0.21
CLN3-251ENST00000636853 SLC6A3Q01959 620 aa16.39■□□□□ 0.21
CLN3-251ENST00000636853 GPS1Q13098 491 aa16.39■□□□□ 0.21
CLN3-251ENST00000636853 KYNUQ16719 465 aa16.39■□□□□ 0.21
CLN3-251ENST00000636853 TTC31Q49AM3 519 aaPredicted RBP16.39■□□□□ 0.21
CLN3-251ENST00000636853 MFSD14CQ5VZR4 134 aa16.39■□□□□ 0.21
CLN3-251ENST00000636853 ARHGAP17Q68EM7 881 aa16.39■□□□□ 0.21
CLN3-251ENST00000636853 HIBCHQ6NVY1 386 aaPredicted RBP16.39■□□□□ 0.21
CLN3-251ENST00000636853 BBS12Q6ZW61 710 aa16.39■□□□□ 0.21
CLN3-251ENST00000636853 BBOF1Q8ND07 529 aa16.39■□□□□ 0.21
CLN3-251ENST00000636853 CLEC4CQ8WTT0 213 aa16.39■□□□□ 0.21
CLN3-251ENST00000636853 KHSRPQ92945 711 aaKnown RBP eCLIP16.39■□□□□ 0.21
CLN3-251ENST00000636853 TLCD1Q96CP7 247 aa16.39■□□□□ 0.21
CLN3-251ENST00000636853 STAU2Q9NUL3 570 aaKnown RBP eCLIP16.39■□□□□ 0.21
CLN3-251ENST00000636853 ST3GAL5Q9UNP4 418 aa16.39■□□□□ 0.21
CLN3-251ENST00000636853 EFR3BQ9Y2G0 817 aa16.39■□□□□ 0.21
CLN3-251ENST00000636853 BRCA2P51587 3418 aa16.39■□□□□ 0.21
CLN3-251ENST00000636853 CEP350Q5VT06 3117 aa16.39■□□□□ 0.21
CLN3-251ENST00000636853 KPNA6O60684 536 aa16.39■□□□□ 0.21
CLN3-251ENST00000636853 ITGAVP06756 1048 aa16.39■□□□□ 0.21
CLN3-251ENST00000636853 SETSIPP0DME0 302 aa16.39■□□□□ 0.21
CLN3-251ENST00000636853 LSP1P33241 339 aa16.39■□□□□ 0.21
CLN3-251ENST00000636853 PNPLA4P41247 253 aa16.39■□□□□ 0.21
CLN3-251ENST00000636853 TM4SF4P48230 202 aa16.39■□□□□ 0.21
CLN3-251ENST00000636853 LILRA4P59901 499 aa16.39■□□□□ 0.21
CLN3-251ENST00000636853 SCYL2Q6P3W7 929 aa16.39■□□□□ 0.21
CLN3-251ENST00000636853 PAXIP1Q6ZW49 1069 aaPredicted RBP16.39■□□□□ 0.21
CLN3-251ENST00000636853 ARFGAP2Q8N6H7 521 aa16.39■□□□□ 0.21
CLN3-251ENST00000636853 BCAS4Q8TDM0 211 aa16.39■□□□□ 0.21
CLN3-251ENST00000636853 NGRNQ9NPE2 291 aaKnown RBP16.39■□□□□ 0.21
CLN3-251ENST00000636853 TRPV2Q9Y5S1 764 aa16.39■□□□□ 0.21
CLN3-251ENST00000636853 RGS16O15492 202 aaPredicted RBP16.38■□□□□ 0.21
CLN3-251ENST00000636853 CDH6P55285 790 aa16.38■□□□□ 0.21
CLN3-251ENST00000636853 IFI35P80217 286 aaPredicted RBP16.38■□□□□ 0.21
CLN3-251ENST00000636853 CCDC142Q17RM4 750 aa16.38■□□□□ 0.21
CLN3-251ENST00000636853 SV2CQ496J9 727 aa16.38■□□□□ 0.21
CLN3-251ENST00000636853 ADGRF2Q8IZF7 708 aa16.38■□□□□ 0.21
CLN3-251ENST00000636853 CRYBG2Q8N1P7 616 aa16.38■□□□□ 0.21
CLN3-251ENST00000636853 SLC12A6Q9UHW9 1150 aa16.38■□□□□ 0.21
CLN3-251ENST00000636853 DNALI1O14645 258 aaPredicted RBP16.38■□□□□ 0.21
CLN3-251ENST00000636853 RASGRF2O14827 1237 aa16.38■□□□□ 0.21
CLN3-251ENST00000636853 PRPSAP2O60256 369 aa16.38■□□□□ 0.21
CLN3-251ENST00000636853 HUS1O60921 280 aa16.38■□□□□ 0.21
CLN3-251ENST00000636853 TTC4O95801 387 aa16.38■□□□□ 0.21
CLN3-251ENST00000636853 CHRNA1P02708 482 aa16.38■□□□□ 0.21
CLN3-251ENST00000636853 RARBP10826 455 aa16.38■□□□□ 0.21
CLN3-251ENST00000636853 PECAM1P16284 738 aaPredicted RBP16.38■□□□□ 0.21
CLN3-251ENST00000636853 AFF1P51825 1210 aaKnown RBP16.38■□□□□ 0.21
CLN3-251ENST00000636853 GDF10P55107 478 aa16.38■□□□□ 0.21
CLN3-251ENST00000636853 PRKCZQ05513 592 aa16.38■□□□□ 0.21
CLN3-251ENST00000636853 LONRF1Q17RB8 773 aa16.38■□□□□ 0.21
CLN3-251ENST00000636853 OSTM1Q86WC4 334 aa16.38■□□□□ 0.21
CLN3-251ENST00000636853 ANKRD52Q8NB46 1076 aa16.38■□□□□ 0.21
CLN3-251ENST00000636853 CCHCR1Q8TD31 782 aa16.38■□□□□ 0.21
CLN3-251ENST00000636853 SLC2A14Q8TDB8 520 aa16.38■□□□□ 0.21
CLN3-251ENST00000636853 FAM172AQ8WUF8 416 aa16.38■□□□□ 0.21
CLN3-251ENST00000636853 PGM2Q96G03 612 aa16.38■□□□□ 0.21
CLN3-251ENST00000636853 OSBPL7Q9BZF2 842 aa16.38■□□□□ 0.21
CLN3-251ENST00000636853 GPATCH2LQ9NWQ4 482 aa16.38■□□□□ 0.21
CLN3-251ENST00000636853 NINJ2Q9NZG7 142 aa16.38■□□□□ 0.21
CLN3-251ENST00000636853 A6NNZ2 444 aa16.37■□□□□ 0.21
CLN3-251ENST00000636853 ATP2C2O75185 946 aa16.37■□□□□ 0.21
CLN3-251ENST00000636853 LCP1P13796 627 aa16.37■□□□□ 0.21
CLN3-251ENST00000636853 TFE3P19532 575 aaPredicted RBP16.37■□□□□ 0.21
CLN3-251ENST00000636853 CAP1Q01518 475 aa16.37■□□□□ 0.21
CLN3-251ENST00000636853 BST2Q10589 180 aaKnown RBP16.37■□□□□ 0.21
CLN3-251ENST00000636853 TUBB8Q3ZCM7 444 aa16.37■□□□□ 0.21
CLN3-251ENST00000636853 C6orf118Q5T5N4 469 aa16.37■□□□□ 0.21
CLN3-251ENST00000636853 B4GALNT4Q76KP1 1039 aa16.37■□□□□ 0.21
CLN3-251ENST00000636853 LPPQ93052 612 aa16.37■□□□□ 0.21
CLN3-251ENST00000636853 C9orf72Q96LT7 481 aa16.37■□□□□ 0.21
CLN3-251ENST00000636853 PPP1R10Q96QC0 940 aaKnown RBP16.37■□□□□ 0.21
CLN3-251ENST00000636853 TSPAN18Q96SJ8 248 aa16.37■□□□□ 0.21
CLN3-251ENST00000636853 TMEM109Q9BVC6 243 aa16.37■□□□□ 0.21
CLN3-251ENST00000636853 SPC25Q9HBM1 224 aa16.37■□□□□ 0.21
CLN3-251ENST00000636853 ACAT1P24752 427 aaKnown RBP16.36■□□□□ 0.21
CLN3-251ENST00000636853 TKTP29401 623 aaKnown RBP16.36■□□□□ 0.21
CLN3-251ENST00000636853 SDC4P31431 198 aa16.36■□□□□ 0.21
CLN3-251ENST00000636853 MLH1P40692 756 aa16.36■□□□□ 0.21
CLN3-251ENST00000636853 BCAT1P54687 386 aa16.36■□□□□ 0.21
CLN3-251ENST00000636853 ZC3H12AQ5D1E8 599 aaKnown RBP16.36■□□□□ 0.21
CLN3-251ENST00000636853 NPNTQ6UXI9 565 aa16.36■□□□□ 0.21
CLN3-251ENST00000636853 ZCCHC9Q8N567 271 aaKnown RBP16.36■□□□□ 0.21
CLN3-251ENST00000636853 TTC13Q8NBP0 860 aa16.36■□□□□ 0.21
CLN3-251ENST00000636853 STK32AQ8WU08 396 aa16.36■□□□□ 0.21
CLN3-251ENST00000636853 RBM15Q96T37 977 aaKnown RBP eCLIP16.36■□□□□ 0.21
CLN3-251ENST00000636853 FAM105AQ9NUU6 356 aa16.36■□□□□ 0.21
CLN3-251ENST00000636853 TPX2Q9ULW0 747 aaKnown RBP16.36■□□□□ 0.21
CLN3-251ENST00000636853 DPYSL4O14531 572 aa16.36■□□□□ 0.21
CLN3-251ENST00000636853 CACNB2Q08289 660 aaPredicted RBP16.36■□□□□ 0.21
CLN3-251ENST00000636853 AUHQ13825 339 aaKnown RBP16.36■□□□□ 0.21
CLN3-251ENST00000636853 DPYSL3Q14195 570 aa16.36■□□□□ 0.21
CLN3-251ENST00000636853 LIMS2Q7Z4I7 341 aa16.36■□□□□ 0.21
CLN3-251ENST00000636853 RSPH3Q86UC2 560 aa16.36■□□□□ 0.21
CLN3-251ENST00000636853 MDM1Q8TC05 714 aa16.36■□□□□ 0.21
CLN3-251ENST00000636853 GAD1Q99259 594 aa16.36■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms