RNA–Protein interactions for RNA: ENST00000596121.5

VRK3-210, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 983 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-210ENST00000596121 TUBGCP2Q9BSJ2 902 aa11.8□□□□□ -0.52
VRK3-210ENST00000596121 TRMT61BQ9BVS5 477 aaKnown RBP11.8□□□□□ -0.52
VRK3-210ENST00000596121 DUSP16Q9BY84 665 aa11.8□□□□□ -0.52
VRK3-210ENST00000596121 FAM124BQ9H5Z6 455 aaPredicted RBP11.8□□□□□ -0.52
VRK3-210ENST00000596121 TRPC7Q9HCX4 862 aa11.8□□□□□ -0.52
VRK3-210ENST00000596121 UBE2TQ9NPD8 197 aaPredicted RBP11.8□□□□□ -0.52
VRK3-210ENST00000596121 ANO10Q9NW15 660 aa11.8□□□□□ -0.52
VRK3-210ENST00000596121 GMIPQ9P107 970 aa11.8□□□□□ -0.52
VRK3-210ENST00000596121 FBXL21Q9UKT6 434 aa11.8□□□□□ -0.52
VRK3-210ENST00000596121 CNTN6Q9UQ52 1028 aa11.8□□□□□ -0.52
VRK3-210ENST00000596121 PCDHB4Q9Y5E5 795 aa11.8□□□□□ -0.52
VRK3-210ENST00000596121 F5P12259 2224 aa11.8□□□□□ -0.52
VRK3-210ENST00000596121 ATP8B3O60423 1300 aa11.8□□□□□ -0.52
VRK3-210ENST00000596121 SOBPA7XYQ1 873 aa11.79□□□□□ -0.52
VRK3-210ENST00000596121 BECN2A8MW95 431 aa11.79□□□□□ -0.52
VRK3-210ENST00000596121 O00370 1275 aa11.79□□□□□ -0.52
VRK3-210ENST00000596121 GABBR2O75899 941 aa11.79□□□□□ -0.52
VRK3-210ENST00000596121 RTN3O95197 1032 aaPredicted RBP11.79□□□□□ -0.52
VRK3-210ENST00000596121 DDX6P26196 483 aaKnown RBP eCLIP11.79□□□□□ -0.52
VRK3-210ENST00000596121 CETN1Q12798 172 aa11.79□□□□□ -0.52
VRK3-210ENST00000596121 GOLGA7BQ2TAP0 167 aa11.79□□□□□ -0.52
VRK3-210ENST00000596121 PKDCCQ504Y2 493 aa11.79□□□□□ -0.52
VRK3-210ENST00000596121 GBP6Q6ZN66 633 aa11.79□□□□□ -0.52
VRK3-210ENST00000596121 TMEM105Q8N8V8 129 aa11.79□□□□□ -0.52
VRK3-210ENST00000596121 ANKRD52Q8NB46 1076 aa11.79□□□□□ -0.52
VRK3-210ENST00000596121 RBBP8NLQ8NC74 664 aaPredicted RBP11.79□□□□□ -0.52
VRK3-210ENST00000596121 UBA3Q8TBC4 463 aa11.79□□□□□ -0.52
VRK3-210ENST00000596121 FBXO32Q969P5 355 aa11.79□□□□□ -0.52
VRK3-210ENST00000596121 FUCA2Q9BTY2 467 aa11.79□□□□□ -0.52
VRK3-210ENST00000596121 NDST4Q9H3R1 872 aa11.79□□□□□ -0.52
VRK3-210ENST00000596121 NMUR1Q9HB89 426 aa11.79□□□□□ -0.52
VRK3-210ENST00000596121 ACP6Q9NPH0 428 aa11.79□□□□□ -0.52
VRK3-210ENST00000596121 ARHGEF3Q9NR81 526 aa11.79□□□□□ -0.52
VRK3-210ENST00000596121 HEBP1Q9NRV9 189 aa11.79□□□□□ -0.52
VRK3-210ENST00000596121 TDP1Q9NUW8 608 aa11.79□□□□□ -0.52
VRK3-210ENST00000596121 OSER1Q9NX31 292 aa11.79□□□□□ -0.52
VRK3-210ENST00000596121 TAB2Q9NYJ8 693 aa11.79□□□□□ -0.52
VRK3-210ENST00000596121 TRPM5Q9NZQ8 1165 aa11.79□□□□□ -0.52
VRK3-210ENST00000596121 COL4A2P08572 1712 aa11.78□□□□□ -0.52
VRK3-210ENST00000596121 GTPBP10A4D1E9 387 aaKnown RBP11.78□□□□□ -0.52
VRK3-210ENST00000596121 OTOL1A6NHN0 477 aaPredicted RBP11.78□□□□□ -0.52
VRK3-210ENST00000596121 CYP26A1O43174 497 aa11.78□□□□□ -0.52
VRK3-210ENST00000596121 OLFM2O95897 454 aa11.78□□□□□ -0.52
VRK3-210ENST00000596121 OAS1P00973 400 aaKnown RBP11.78□□□□□ -0.52
VRK3-210ENST00000596121 VDRP11473 427 aa11.78□□□□□ -0.52
VRK3-210ENST00000596121 PRKCSHP14314 528 aaPredicted RBP11.78□□□□□ -0.52
VRK3-210ENST00000596121 CD19P15391 556 aa11.78□□□□□ -0.52
VRK3-210ENST00000596121 HDCP19113 662 aa11.78□□□□□ -0.52
VRK3-210ENST00000596121 CD72P21854 359 aa11.78□□□□□ -0.52
VRK3-210ENST00000596121 BRD2P25440 801 aaKnown RBP11.78□□□□□ -0.52
VRK3-210ENST00000596121 EEF1GP26641 437 aaKnown RBP11.78□□□□□ -0.52
VRK3-210ENST00000596121 AVPR1AP37288 418 aa11.78□□□□□ -0.52
VRK3-210ENST00000596121 KIF11P52732 1056 aa11.78□□□□□ -0.52
VRK3-210ENST00000596121 TNK2Q07912 1038 aa11.78□□□□□ -0.52
VRK3-210ENST00000596121 PDE4CQ08493 712 aa11.78□□□□□ -0.52
VRK3-210ENST00000596121 ZNF268Q14587 947 aaPredicted RBP11.78□□□□□ -0.52
VRK3-210ENST00000596121 KRT31Q15323 416 aa11.78□□□□□ -0.52
VRK3-210ENST00000596121 ZNF77Q15935 545 aa11.78□□□□□ -0.52
VRK3-210ENST00000596121 EXOC3L4Q17RC7 722 aa11.78□□□□□ -0.52
VRK3-210ENST00000596121 KLHL40Q2TBA0 621 aa11.78□□□□□ -0.52
VRK3-210ENST00000596121 ANO6Q4KMQ2 910 aa11.78□□□□□ -0.52
VRK3-210ENST00000596121 SGO2Q562F6 1265 aa11.78□□□□□ -0.52
VRK3-210ENST00000596121 SNX30Q5VWJ9 437 aa11.78□□□□□ -0.52
VRK3-210ENST00000596121 APTXQ7Z2E3 356 aaKnown RBP11.78□□□□□ -0.52
VRK3-210ENST00000596121 SCD5Q86SK9 330 aa11.78□□□□□ -0.52
VRK3-210ENST00000596121 PIGZQ86VD9 579 aa11.78□□□□□ -0.52
VRK3-210ENST00000596121 FAM114A1Q8IWE2 563 aa11.78□□□□□ -0.52
VRK3-210ENST00000596121 CELF5Q8N6W0 485 aaKnown RBP11.78□□□□□ -0.52
VRK3-210ENST00000596121 FLCNQ8NFG4 579 aa11.78□□□□□ -0.52
VRK3-210ENST00000596121 TTC8Q8TAM2 541 aa11.78□□□□□ -0.52
VRK3-210ENST00000596121 BPIFB1Q8TDL5 484 aa11.78□□□□□ -0.52
VRK3-210ENST00000596121 DEPDC1BQ8WUY9 529 aa11.78□□□□□ -0.52
VRK3-210ENST00000596121 NDRG1Q92597 394 aaKnown RBP11.78□□□□□ -0.52
VRK3-210ENST00000596121 WBP2Q969T9 261 aa11.78□□□□□ -0.52
VRK3-210ENST00000596121 DDX23Q9BUQ8 820 aaKnown RBP11.78□□□□□ -0.52
VRK3-210ENST00000596121 FOXQ1Q9C009 403 aa11.78□□□□□ -0.52
VRK3-210ENST00000596121 CCSER2Q9H7U1 834 aa11.78□□□□□ -0.52
VRK3-210ENST00000596121 BRD9Q9H8M2 597 aa11.78□□□□□ -0.52
VRK3-210ENST00000596121 TBC1D17Q9HA65 648 aa11.78□□□□□ -0.52
VRK3-210ENST00000596121 COMMD8Q9NX08 183 aa11.78□□□□□ -0.52
VRK3-210ENST00000596121 OBP2AQ9NY56 170 aa11.78□□□□□ -0.52
VRK3-210ENST00000596121 TSPAN16Q9UKR8 245 aa11.78□□□□□ -0.52
VRK3-210ENST00000596121 MTF2Q9Y483 593 aaPredicted RBP11.78□□□□□ -0.52
VRK3-210ENST00000596121 USP3Q9Y6I4 520 aa11.78□□□□□ -0.52
VRK3-210ENST00000596121 NUP210Q8TEM1 1887 aaPredicted RBP11.78□□□□□ -0.52
VRK3-210ENST00000596121 WDFY4Q6ZS81 3184 aa11.77□□□□□ -0.52
VRK3-210ENST00000596121 MUC6Q6W4X9 2439 aa11.77□□□□□ -0.52
VRK3-210ENST00000596121 PATJQ8NI35 1801 aa11.77□□□□□ -0.52
VRK3-210ENST00000596121 TRAV19A0A0A6YYK7 116 aa11.77□□□□□ -0.53
VRK3-210ENST00000596121 DPYSL4O14531 572 aa11.77□□□□□ -0.53
VRK3-210ENST00000596121 ZNF263O14978 683 aa11.77□□□□□ -0.53
VRK3-210ENST00000596121 CHADO15335 359 aa11.77□□□□□ -0.53
VRK3-210ENST00000596121 COCHO43405 550 aa11.77□□□□□ -0.53
VRK3-210ENST00000596121 TBX18O95935 607 aa11.77□□□□□ -0.53
VRK3-210ENST00000596121 ABL1P00519 1130 aa11.77□□□□□ -0.53
VRK3-210ENST00000596121 PAEPP09466 180 aa11.77□□□□□ -0.53
VRK3-210ENST00000596121 USP17L7P0C7H9 530 aa11.77□□□□□ -0.53
VRK3-210ENST00000596121 PNMA6AP0CW24 399 aaPredicted RBP11.77□□□□□ -0.53
VRK3-210ENST00000596121 ZNF18P17022 549 aa11.77□□□□□ -0.53
VRK3-210ENST00000596121 COL9A1P20849 921 aa11.77□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms