RNA–Protein interactions for RNA: ENST00000581021.5

SS18-218, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 588 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-218ENST00000581021 ARHGAP17Q68EM7 881 aa21.29■■□□□ 1
SS18-218ENST00000581021 GJB7Q6PEY0 223 aa21.29■■□□□ 1
SS18-218ENST00000581021 TTC30AQ86WT1 665 aa21.29■■□□□ 1
SS18-218ENST00000581021 CELF5Q8N6W0 485 aaKnown RBP21.29■■□□□ 1
SS18-218ENST00000581021 BPIFB1Q8TDL5 484 aa21.29■■□□□ 1
SS18-218ENST00000581021 TFAP2BQ92481 460 aa21.29■■□□□ 1
SS18-218ENST00000581021 FBXO32Q969P5 355 aa21.29■■□□□ 1
SS18-218ENST00000581021 TDP1Q9NUW8 608 aa21.29■■□□□ 1
SS18-218ENST00000581021 TRPM5Q9NZQ8 1165 aa21.29■■□□□ 1
SS18-218ENST00000581021 GMIPQ9P107 970 aa21.29■■□□□ 1
SS18-218ENST00000581021 ZMYM5Q9UJ78 669 aa21.29■■□□□ 1
SS18-218ENST00000581021 ZNF263O14978 683 aa21.28■■□□□ 1
SS18-218ENST00000581021 RTN3O95197 1032 aaPredicted RBP21.28■■□□□ 1
SS18-218ENST00000581021 OLFM2O95897 454 aa21.28■■□□□ 1
SS18-218ENST00000581021 OAS1P00973 400 aaKnown RBP21.28■■□□□ 1
SS18-218ENST00000581021 CKMP06732 381 aa21.28■■□□□ 1
SS18-218ENST00000581021 ZDHHC11BP0C7U3 371 aa21.28■■□□□ 1
SS18-218ENST00000581021 AOC1P19801 751 aa21.28■■□□□ 1
SS18-218ENST00000581021 CD72P21854 359 aa21.28■■□□□ 1
SS18-218ENST00000581021 ZNF132P52740 706 aa21.28■■□□□ 1
SS18-218ENST00000581021 STARD6P59095 220 aa21.28■■□□□ 1
SS18-218ENST00000581021 GCNT1Q02742 428 aa21.28■■□□□ 1
SS18-218ENST00000581021 TNK2Q07912 1038 aa21.28■■□□□ 1
SS18-218ENST00000581021 CETN1Q12798 172 aa21.28■■□□□ 1
SS18-218ENST00000581021 ZNF268Q14587 947 aaPredicted RBP21.28■■□□□ 1
SS18-218ENST00000581021 ZNF77Q15935 545 aa21.28■■□□□ 1
SS18-218ENST00000581021 TPD52L1Q16890 204 aaPredicted RBP21.28■■□□□ 1
SS18-218ENST00000581021 TPRG1Q6ZUI0 275 aa21.28■■□□□ 1
SS18-218ENST00000581021 DUSP16Q9BY84 665 aa21.28■■□□□ 1
SS18-218ENST00000581021 RNF38Q9H0F5 515 aa21.28■■□□□ 1
SS18-218ENST00000581021 TRPV5Q9NQA5 729 aa21.28■■□□□ 1
SS18-218ENST00000581021 MTF2Q9Y483 593 aaPredicted RBP21.28■■□□□ 1
SS18-218ENST00000581021 F5P12259 2224 aa21.27■■□□□ 1
SS18-218ENST00000581021 TULP2O00295 520 aa21.27■■□□□ 1
SS18-218ENST00000581021 DPYSL4O14531 572 aa21.27■■□□□ 1
SS18-218ENST00000581021 CHADO15335 359 aa21.27■■□□□ 1
SS18-218ENST00000581021 CYP26A1O43174 497 aa21.27■■□□□ 1
SS18-218ENST00000581021 SLC9A1P19634 815 aa21.27■■□□□ 1
SS18-218ENST00000581021 MTIF2P46199 727 aaKnown RBP21.27■■□□□ 1
SS18-218ENST00000581021 CLCN5P51795 746 aa21.27■■□□□ 1
SS18-218ENST00000581021 USP4Q13107 963 aa21.27■■□□□ 1
SS18-218ENST00000581021 GOLGA7BQ2TAP0 167 aa21.27■■□□□ 1
SS18-218ENST00000581021 TRIM65Q6PJ69 517 aa21.27■■□□□ 1
SS18-218ENST00000581021 TMEM270Q6UE05 265 aa21.27■■□□□ 1
SS18-218ENST00000581021 PRSS33Q8NF86 280 aa21.27■■□□□ 1
SS18-218ENST00000581021 IRF7Q92985 503 aa21.27■■□□□ 1
SS18-218ENST00000581021 SLITRK1Q96PX8 696 aa21.27■■□□□ 1
SS18-218ENST00000581021 EHD2Q9NZN4 543 aa21.27■■□□□ 1
SS18-218ENST00000581021 CHORDC1Q9UHD1 332 aaPredicted RBP21.27■■□□□ 1
SS18-218ENST00000581021 AJAP1Q9UKB5 411 aaPredicted RBP21.27■■□□□ 1
SS18-218ENST00000581021 NFE2L3Q9Y4A8 694 aa21.27■■□□□ 1
SS18-218ENST00000581021 HELZP42694 1942 aaKnown RBP21.26■□□□□ 0.99
SS18-218ENST00000581021 O00370 1275 aa21.26■□□□□ 0.99
SS18-218ENST00000581021 USP17L7P0C7H9 530 aa21.26■□□□□ 0.99
SS18-218ENST00000581021 GLULP15104 373 aa21.26■□□□□ 0.99
SS18-218ENST00000581021 HDCP19113 662 aa21.26■□□□□ 0.99
SS18-218ENST00000581021 SOX9P48436 509 aa21.26■□□□□ 0.99
SS18-218ENST00000581021 YWHAEP62258 255 aaKnown RBP21.26■□□□□ 0.99
SS18-218ENST00000581021 PRKCQQ04759 706 aa21.26■□□□□ 0.99
SS18-218ENST00000581021 MAN2A1Q16706 1144 aa21.26■□□□□ 0.99
SS18-218ENST00000581021 CT47A1Q5JQC4 288 aaPredicted RBP21.26■□□□□ 0.99
SS18-218ENST00000581021 TRIM68Q6AZZ1 485 aa21.26■□□□□ 0.99
SS18-218ENST00000581021 DPY19L2P1Q6NXN4 242 aa21.26■□□□□ 0.99
SS18-218ENST00000581021 YAF2Q8IY57 180 aa21.26■□□□□ 0.99
SS18-218ENST00000581021 ZNF687Q8N1G0 1237 aa21.26■□□□□ 0.99
SS18-218ENST00000581021 TTC8Q8TAM2 541 aa21.26■□□□□ 0.99
SS18-218ENST00000581021 ENOX1Q8TC92 643 aaKnown RBP21.26■□□□□ 0.99
SS18-218ENST00000581021 FAM83CQ9BQN1 747 aa21.26■□□□□ 0.99
SS18-218ENST00000581021 KIF9Q9HAQ2 790 aa21.26■□□□□ 0.99
SS18-218ENST00000581021 SIX2Q9NPC8 291 aa21.26■□□□□ 0.99
SS18-218ENST00000581021 HPS4Q9NQG7 708 aa21.26■□□□□ 0.99
SS18-218ENST00000581021 OSER1Q9NX31 292 aa21.26■□□□□ 0.99
SS18-218ENST00000581021 GTSE1Q9NYZ3 720 aa21.26■□□□□ 0.99
SS18-218ENST00000581021 TSPAN16Q9UKR8 245 aa21.26■□□□□ 0.99
SS18-218ENST00000581021 ARHGAP26Q9UNA1 814 aa21.26■□□□□ 0.99
SS18-218ENST00000581021 HCN4Q9Y3Q4 1203 aa21.26■□□□□ 0.99
SS18-218ENST00000581021 PCDHB4Q9Y5E5 795 aa21.26■□□□□ 0.99
SS18-218ENST00000581021 MYH10P35580 1976 aa21.25■□□□□ 0.99
SS18-218ENST00000581021 OTOL1A6NHN0 477 aaPredicted RBP21.25■□□□□ 0.99
SS18-218ENST00000581021 KCNJ18B7U540 433 aa21.25■□□□□ 0.99
SS18-218ENST00000581021 ABL1P00519 1130 aa21.25■□□□□ 0.99
SS18-218ENST00000581021 CD19P15391 556 aa21.25■□□□□ 0.99
SS18-218ENST00000581021 TRIM21P19474 475 aaKnown RBP21.25■□□□□ 0.99
SS18-218ENST00000581021 PON1P27169 355 aa21.25■□□□□ 0.99
SS18-218ENST00000581021 PPP3CCP48454 512 aa21.25■□□□□ 0.99
SS18-218ENST00000581021 KCNJ12Q14500 433 aa21.25■□□□□ 0.99
SS18-218ENST00000581021 ARHGAP29Q52LW3 1261 aa21.25■□□□□ 0.99
SS18-218ENST00000581021 CDKAL1Q5VV42 579 aa21.25■□□□□ 0.99
SS18-218ENST00000581021 SNX30Q5VWJ9 437 aa21.25■□□□□ 0.99
SS18-218ENST00000581021 CCDC105Q8IYK2 499 aa21.25■□□□□ 0.99
SS18-218ENST00000581021 ANKRD52Q8NB46 1076 aa21.25■□□□□ 0.99
SS18-218ENST00000581021 RBBP8NLQ8NC74 664 aaPredicted RBP21.25■□□□□ 0.99
SS18-218ENST00000581021 PJA1Q8NG27 643 aa21.25■□□□□ 0.99
SS18-218ENST00000581021 SH3RF2Q8TEC5 729 aa21.25■□□□□ 0.99
SS18-218ENST00000581021 OVCA2Q8WZ82 227 aa21.25■□□□□ 0.99
SS18-218ENST00000581021 CHFRQ96EP1 664 aa21.25■□□□□ 0.99
SS18-218ENST00000581021 ZFRQ96KR1 1074 aaKnown RBP21.25■□□□□ 0.99
SS18-218ENST00000581021 CCSER2Q9H7U1 834 aa21.25■□□□□ 0.99
SS18-218ENST00000581021 NMUR1Q9HB89 426 aa21.25■□□□□ 0.99
SS18-218ENST00000581021 PNPLA8Q9NP80 782 aa21.25■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms