RNA–Protein interactions for RNA: ENST00000568219.5

PALB2-206, Transcript of partner and localizer of BRCA2, humanhuman

TSL 1 (best) BASIC

Gene PALB2, Length 3,963 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PALB2-206ENST00000568219 ITGA9Q13797 1035 aa11.33□□□□□ -0.6
PALB2-206ENST00000568219 CCDC92Q53HC0 331 aaPredicted RBP11.33□□□□□ -0.6
PALB2-206ENST00000568219 VWA5B1Q5TIE3 1220 aa11.33□□□□□ -0.6
PALB2-206ENST00000568219 CDR2LQ86X02 465 aaPredicted RBP11.33□□□□□ -0.6
PALB2-206ENST00000568219 ADPGKQ9BRR6 497 aa11.33□□□□□ -0.6
PALB2-206ENST00000568219 OCEL1Q9H607 264 aa11.33□□□□□ -0.6
PALB2-206ENST00000568219 KCNH7Q9NS40 1196 aa11.33□□□□□ -0.6
PALB2-206ENST00000568219 SHOC2Q9UQ13 582 aa11.33□□□□□ -0.6
PALB2-206ENST00000568219 XPOTO43592 962 aaKnown RBP11.33□□□□□ -0.6
PALB2-206ENST00000568219 TM7SF2O76062 418 aa11.33□□□□□ -0.6
PALB2-206ENST00000568219 PSMC3P17980 439 aa11.33□□□□□ -0.6
PALB2-206ENST00000568219 RPL22P35268 128 aaKnown RBP11.33□□□□□ -0.6
PALB2-206ENST00000568219 ABCG1P45844 678 aa11.33□□□□□ -0.6
PALB2-206ENST00000568219 NT5C2P49902 561 aa11.33□□□□□ -0.6
PALB2-206ENST00000568219 RPS6KA2Q15349 733 aa11.33□□□□□ -0.6
PALB2-206ENST00000568219 ITPRIPL1Q6GPH6 555 aa11.33□□□□□ -0.6
PALB2-206ENST00000568219 FAM196AQ6ZSG2 479 aa11.33□□□□□ -0.6
PALB2-206ENST00000568219 TMEM179Q6ZVK1 233 aa11.33□□□□□ -0.6
PALB2-206ENST00000568219 CLVS1Q8IUQ0 354 aaPredicted RBP11.33□□□□□ -0.6
PALB2-206ENST00000568219 KBTBD2Q8IY47 623 aa11.33□□□□□ -0.6
PALB2-206ENST00000568219 HACE1Q8IYU2 909 aa11.33□□□□□ -0.6
PALB2-206ENST00000568219 SHC3Q92529 594 aa11.33□□□□□ -0.6
PALB2-206ENST00000568219 TMEM143Q96AN5 459 aa11.33□□□□□ -0.6
PALB2-206ENST00000568219 HEXIM2Q96MH2 286 aaKnown RBP11.33□□□□□ -0.6
PALB2-206ENST00000568219 CYLDQ9NQC7 956 aa11.33□□□□□ -0.6
PALB2-206ENST00000568219 KRT82Q9NSB4 513 aa11.33□□□□□ -0.6
PALB2-206ENST00000568219 GPATCH2LQ9NWQ4 482 aa11.33□□□□□ -0.6
PALB2-206ENST00000568219 TBX20Q9UMR3 447 aa11.33□□□□□ -0.6
PALB2-206ENST00000568219 LMTK3Q96Q04 1460 aa11.33□□□□□ -0.6
PALB2-206ENST00000568219 SPDYE16A6NNV3 312 aaPredicted RBP11.33□□□□□ -0.6
PALB2-206ENST00000568219 P4HA2O15460 535 aa11.33□□□□□ -0.6
PALB2-206ENST00000568219 FAM58BPP0C7Q3 252 aa11.33□□□□□ -0.6
PALB2-206ENST00000568219 RARBP10826 455 aa11.33□□□□□ -0.6
PALB2-206ENST00000568219 TCF4P15884 667 aa11.33□□□□□ -0.6
PALB2-206ENST00000568219 EEF1DP29692 281 aaKnown RBP11.33□□□□□ -0.6
PALB2-206ENST00000568219 PLOD1Q02809 727 aaPredicted RBP11.33□□□□□ -0.6
PALB2-206ENST00000568219 PDK1Q15118 436 aa11.33□□□□□ -0.6
PALB2-206ENST00000568219 CDC42EP5Q6NZY7 148 aa11.33□□□□□ -0.6
PALB2-206ENST00000568219 IFNEQ86WN2 208 aa11.33□□□□□ -0.6
PALB2-206ENST00000568219 AGBL1Q96MI9 1066 aa11.33□□□□□ -0.6
PALB2-206ENST00000568219 PANX3Q96QZ0 392 aa11.33□□□□□ -0.6
PALB2-206ENST00000568219 IL1RL2Q9HB29 575 aa11.33□□□□□ -0.6
PALB2-206ENST00000568219 PCDH9Q9HC56 1237 aa11.33□□□□□ -0.6
PALB2-206ENST00000568219 TBC1D23Q9NUY8 699 aa11.33□□□□□ -0.6
PALB2-206ENST00000568219 TMCO1Q9UM00 188 aa11.33□□□□□ -0.6
PALB2-206ENST00000568219 DCAF8L1A6NGE4 600 aa11.32□□□□□ -0.6
PALB2-206ENST00000568219 AKAP10O43572 662 aa11.32□□□□□ -0.6
PALB2-206ENST00000568219 MAMLD1Q13495 774 aa11.32□□□□□ -0.6
PALB2-206ENST00000568219 CYP1B1Q16678 543 aa11.32□□□□□ -0.6
PALB2-206ENST00000568219 SLC27A3Q5K4L6 730 aa11.32□□□□□ -0.6
PALB2-206ENST00000568219 PDPK2PQ6A1A2 396 aa11.32□□□□□ -0.6
PALB2-206ENST00000568219 ARHGEF1Q92888 912 aaKnown RBP11.32□□□□□ -0.6
PALB2-206ENST00000568219 HSPBAP1Q96EW2 488 aa11.32□□□□□ -0.6
PALB2-206ENST00000568219 SERAC1Q96JX3 654 aa11.32□□□□□ -0.6
PALB2-206ENST00000568219 S100A14Q9HCY8 104 aa11.32□□□□□ -0.6
PALB2-206ENST00000568219 TLK1Q9UKI8 766 aa11.32□□□□□ -0.6
PALB2-206ENST00000568219 TCRBV9S1A1TA0A576 114 aa11.32□□□□□ -0.6
PALB2-206ENST00000568219 ARHGEF37A1IGU5 675 aa11.32□□□□□ -0.6
PALB2-206ENST00000568219 MT-CO1P00395 513 aa11.32□□□□□ -0.6
PALB2-206ENST00000568219 CRADDP78560 199 aa11.32□□□□□ -0.6
PALB2-206ENST00000568219 TBC1D25Q3MII6 688 aa11.32□□□□□ -0.6
PALB2-206ENST00000568219 C6orf52Q5T4I8 152 aa11.32□□□□□ -0.6
PALB2-206ENST00000568219 LRRC8EQ6NSJ5 796 aa11.32□□□□□ -0.6
PALB2-206ENST00000568219 CES3Q6UWW8 571 aa11.32□□□□□ -0.6
PALB2-206ENST00000568219 NPNTQ6UXI9 565 aa11.32□□□□□ -0.6
PALB2-206ENST00000568219 GTSE1Q9NYZ3 720 aa11.32□□□□□ -0.6
PALB2-206ENST00000568219 FMN2Q9NZ56 1722 aa11.32□□□□□ -0.6
PALB2-206ENST00000568219 CRYBG1Q9Y4K1 1723 aa11.32□□□□□ -0.6
PALB2-206ENST00000568219 SMAPO00193 183 aa11.32□□□□□ -0.6
PALB2-206ENST00000568219 MAGEB3O15480 346 aa11.32□□□□□ -0.6
PALB2-206ENST00000568219 FDX1P10109 184 aa11.32□□□□□ -0.6
PALB2-206ENST00000568219 NPTX2P47972 431 aa11.32□□□□□ -0.6
PALB2-206ENST00000568219 SFT2D3Q587I9 215 aa11.32□□□□□ -0.6
PALB2-206ENST00000568219 HYIQ5T013 277 aa11.32□□□□□ -0.6
PALB2-206ENST00000568219 CIAPIN1Q6FI81 312 aa11.32□□□□□ -0.6
PALB2-206ENST00000568219 FOXR2Q6PJQ5 311 aa11.32□□□□□ -0.6
PALB2-206ENST00000568219 ENOSF1Q7L5Y1 443 aa11.32□□□□□ -0.6
PALB2-206ENST00000568219 AMIGO2Q86SJ2 522 aa11.32□□□□□ -0.6
PALB2-206ENST00000568219 TREML1Q86YW5 311 aa11.32□□□□□ -0.6
PALB2-206ENST00000568219 RNF135Q8IUD6 432 aa11.32□□□□□ -0.6
PALB2-206ENST00000568219 UNC45BQ8IWX7 931 aa11.32□□□□□ -0.6
PALB2-206ENST00000568219 PAF1Q8N7H5 531 aa11.32□□□□□ -0.6
PALB2-206ENST00000568219 FAM149B1Q96BN6 582 aa11.32□□□□□ -0.6
PALB2-206ENST00000568219 CCDC97Q96F63 343 aaPredicted RBP11.32□□□□□ -0.6
PALB2-206ENST00000568219 HSD17B14Q9BPX1 270 aa11.32□□□□□ -0.6
PALB2-206ENST00000568219 EFHD1Q9BUP0 239 aa11.32□□□□□ -0.6
PALB2-206ENST00000568219 STAU2Q9NUL3 570 aaKnown RBP eCLIP11.32□□□□□ -0.6
PALB2-206ENST00000568219 DDX56Q9NY93 547 aaKnown RBP11.32□□□□□ -0.6
PALB2-206ENST00000568219 KCNK4Q9NYG8 393 aa11.32□□□□□ -0.6
PALB2-206ENST00000568219 RPL26L1Q9UNX3 145 aaKnown RBP11.32□□□□□ -0.6
PALB2-206ENST00000568219 V9GYQ6 96 aa11.32□□□□□ -0.6
PALB2-206ENST00000568219 SMIM31A0A1B0GVY4 71 aa11.31□□□□□ -0.6
PALB2-206ENST00000568219 TFE3P19532 575 aaPredicted RBP11.31□□□□□ -0.6
PALB2-206ENST00000568219 CRKP46108 304 aa11.31□□□□□ -0.6
PALB2-206ENST00000568219 N4BP2L1Q5TBK1 243 aaPredicted RBP11.31□□□□□ -0.6
PALB2-206ENST00000568219 CYP2R1Q6VVX0 501 aa11.31□□□□□ -0.6
PALB2-206ENST00000568219 LDHDQ86WU2 507 aa11.31□□□□□ -0.6
PALB2-206ENST00000568219 TRIM50Q86XT4 487 aa11.31□□□□□ -0.6
PALB2-206ENST00000568219 ZNF398Q8TD17 642 aa11.31□□□□□ -0.6
PALB2-206ENST00000568219 C7orf43Q8WVR3 580 aa11.31□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms