RNA–Protein interactions for RNA: ENST00000563798.1

VPS9D1-203, Transcript of VPS9 domain containing 1, humanhuman

TSL 3

Gene VPS9D1, Length 459 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-203ENST00000563798 SNX30Q5VWJ9 437 aa18.31■□□□□ 0.52
VPS9D1-203ENST00000563798 PRR23BQ6ZRT6 265 aa18.31■□□□□ 0.52
VPS9D1-203ENST00000563798 PAQR9Q6ZVX9 377 aa18.31■□□□□ 0.52
VPS9D1-203ENST00000563798 NUP93Q8N1F7 819 aa18.31■□□□□ 0.52
VPS9D1-203ENST00000563798 PDZD8Q8NEN9 1154 aa18.31■□□□□ 0.52
VPS9D1-203ENST00000563798 EZH1Q92800 747 aaPredicted RBP18.31■□□□□ 0.52
VPS9D1-203ENST00000563798 TNIP3Q96KP6 325 aa18.31■□□□□ 0.52
VPS9D1-203ENST00000563798 SLITRK1Q96PX8 696 aa18.31■□□□□ 0.52
VPS9D1-203ENST00000563798 RNF38Q9H0F5 515 aa18.31■□□□□ 0.52
VPS9D1-203ENST00000563798 LINC00597Q9H2U6 94 aa18.31■□□□□ 0.52
VPS9D1-203ENST00000563798 SMYD3Q9H7B4 428 aa18.31■□□□□ 0.52
VPS9D1-203ENST00000563798 COMMD8Q9NX08 183 aa18.31■□□□□ 0.52
VPS9D1-203ENST00000563798 DNAH14Q0VDD8 3507 aa18.31■□□□□ 0.52
VPS9D1-203ENST00000563798 ATP8B3O60423 1300 aa18.3■□□□□ 0.52
VPS9D1-203ENST00000563798 HELZP42694 1942 aaKnown RBP18.3■□□□□ 0.52
VPS9D1-203ENST00000563798 A0A1W2PQ27 194 aa18.3■□□□□ 0.52
VPS9D1-203ENST00000563798 A0A1W2PQ64 194 aa18.3■□□□□ 0.52
VPS9D1-203ENST00000563798 A0A1W2PQD8 194 aa18.3■□□□□ 0.52
VPS9D1-203ENST00000563798 FAM92AA1XBS5 289 aa18.3■□□□□ 0.52
VPS9D1-203ENST00000563798 LEFTY2O00292 366 aa18.3■□□□□ 0.52
VPS9D1-203ENST00000563798 TNFRSF10BO14763 440 aa18.3■□□□□ 0.52
VPS9D1-203ENST00000563798 RNF40O75150 1001 aa18.3■□□□□ 0.52
VPS9D1-203ENST00000563798 AKAP3O75969 853 aa18.3■□□□□ 0.52
VPS9D1-203ENST00000563798 RTN3O95197 1032 aaPredicted RBP18.3■□□□□ 0.52
VPS9D1-203ENST00000563798 KIF20AO95235 890 aa18.3■□□□□ 0.52
VPS9D1-203ENST00000563798 NFATC1O95644 943 aa18.3■□□□□ 0.52
VPS9D1-203ENST00000563798 HOXC13P31276 330 aa18.3■□□□□ 0.52
VPS9D1-203ENST00000563798 SYKP43405 635 aa18.3■□□□□ 0.52
VPS9D1-203ENST00000563798 CDH8P55286 799 aa18.3■□□□□ 0.52
VPS9D1-203ENST00000563798 DLG4P78352 724 aa18.3■□□□□ 0.52
VPS9D1-203ENST00000563798 SRSF5Q13243 272 aaKnown RBP18.3■□□□□ 0.52
VPS9D1-203ENST00000563798 NAIF1Q69YI7 327 aaPredicted RBP18.3■□□□□ 0.52
VPS9D1-203ENST00000563798 HEATR6Q6AI08 1181 aaKnown RBP18.3■□□□□ 0.52
VPS9D1-203ENST00000563798 SYT13Q7L8C5 426 aa18.3■□□□□ 0.52
VPS9D1-203ENST00000563798 CRYBG2Q8N1P7 616 aa18.3■□□□□ 0.52
VPS9D1-203ENST00000563798 CCDC26Q8TAB7 109 aa18.3■□□□□ 0.52
VPS9D1-203ENST00000563798 DUSP9Q99956 384 aaKnown RBP18.3■□□□□ 0.52
VPS9D1-203ENST00000563798 SDCBP2Q9H190 292 aa18.3■□□□□ 0.52
VPS9D1-203ENST00000563798 SLC8A2Q9UPR5 921 aa18.3■□□□□ 0.52
VPS9D1-203ENST00000563798 CLDN5O00501 218 aa18.29■□□□□ 0.52
VPS9D1-203ENST00000563798 FOXD2O60548 495 aaPredicted RBP18.29■□□□□ 0.52
VPS9D1-203ENST00000563798 ASS1P00966 412 aaKnown RBP18.29■□□□□ 0.52
VPS9D1-203ENST00000563798 P4HA1P13674 534 aa18.29■□□□□ 0.52
VPS9D1-203ENST00000563798 YWHAQP27348 245 aa18.29■□□□□ 0.52
VPS9D1-203ENST00000563798 NDUFA8P51970 172 aa18.29■□□□□ 0.52
VPS9D1-203ENST00000563798 SPEM2Q0P670 501 aa18.29■□□□□ 0.52
VPS9D1-203ENST00000563798 CSRP2Q16527 193 aa18.29■□□□□ 0.52
VPS9D1-203ENST00000563798 LPAL2Q16609 132 aa18.29■□□□□ 0.52
VPS9D1-203ENST00000563798 GAB4Q2WGN9 574 aa18.29■□□□□ 0.52
VPS9D1-203ENST00000563798 C1orf220Q5T0J3 134 aa18.29■□□□□ 0.52
VPS9D1-203ENST00000563798 SV2AQ7L0J3 742 aa18.29■□□□□ 0.52
VPS9D1-203ENST00000563798 FAM35AQ86V20 835 aa18.29■□□□□ 0.52
VPS9D1-203ENST00000563798 UNC93AQ86WB7 457 aa18.29■□□□□ 0.52
VPS9D1-203ENST00000563798 ADGRG2Q8IZP9 1017 aa18.29■□□□□ 0.52
VPS9D1-203ENST00000563798 GAB3Q8WWW8 586 aa18.29■□□□□ 0.52
VPS9D1-203ENST00000563798 LOXL4Q96JB6 756 aa18.29■□□□□ 0.52
VPS9D1-203ENST00000563798 KCNK16Q96T55 309 aa18.29■□□□□ 0.52
VPS9D1-203ENST00000563798 SCAND2PQ9GZW5 306 aaPredicted RBP18.29■□□□□ 0.52
VPS9D1-203ENST00000563798 USP18Q9UMW8 372 aa18.29■□□□□ 0.52
VPS9D1-203ENST00000563798 SLC9A3R1O14745 358 aaPredicted RBP18.28■□□□□ 0.52
VPS9D1-203ENST00000563798 CALUO43852 315 aaPredicted RBP18.28■□□□□ 0.52
VPS9D1-203ENST00000563798 ZDHHC11BP0C7U3 371 aa18.28■□□□□ 0.52
VPS9D1-203ENST00000563798 OPRD1P41143 372 aa18.28■□□□□ 0.52
VPS9D1-203ENST00000563798 TUBP50607 506 aa18.28■□□□□ 0.52
VPS9D1-203ENST00000563798 ATXN1P54253 815 aaKnown RBP18.28■□□□□ 0.52
VPS9D1-203ENST00000563798 DPYDQ12882 1025 aa18.28■□□□□ 0.52
VPS9D1-203ENST00000563798 ARHGAP30Q7Z6I6 1101 aaPredicted RBP18.28■□□□□ 0.52
VPS9D1-203ENST00000563798 DDX42Q86XP3 938 aaKnown RBP eCLIP18.28■□□□□ 0.52
VPS9D1-203ENST00000563798 FUKQ8N0W3 1084 aa18.28■□□□□ 0.52
VPS9D1-203ENST00000563798 FAM160A2Q8N612 972 aaPredicted RBP18.28■□□□□ 0.52
VPS9D1-203ENST00000563798 SMARCD1Q96GM5 515 aa18.28■□□□□ 0.52
VPS9D1-203ENST00000563798 RTKNQ9BST9 563 aa18.28■□□□□ 0.52
VPS9D1-203ENST00000563798 CSNK1G1Q9HCP0 422 aa18.28■□□□□ 0.52
VPS9D1-203ENST00000563798 DMAP1Q9NPF5 467 aaPredicted RBP18.28■□□□□ 0.52
VPS9D1-203ENST00000563798 SEMA4GQ9NTN9 838 aa18.28■□□□□ 0.52
VPS9D1-203ENST00000563798 EBF1Q9UH73 591 aa18.28■□□□□ 0.52
VPS9D1-203ENST00000563798 FRMD4BQ9Y2L6 1034 aa18.28■□□□□ 0.52
VPS9D1-203ENST00000563798 ATP6V1DQ9Y5K8 247 aa18.28■□□□□ 0.52
VPS9D1-203ENST00000563798 CPQQ9Y646 472 aa18.28■□□□□ 0.52
VPS9D1-203ENST00000563798 ASPAP45381 313 aa18.27■□□□□ 0.52
VPS9D1-203ENST00000563798 RAP1GAPP47736 663 aa18.27■□□□□ 0.52
VPS9D1-203ENST00000563798 KRBA2Q6ZNG9 492 aa18.27■□□□□ 0.52
VPS9D1-203ENST00000563798 CEP68Q76N32 757 aa18.27■□□□□ 0.52
VPS9D1-203ENST00000563798 GUF1Q8N442 669 aaKnown RBP18.27■□□□□ 0.52
VPS9D1-203ENST00000563798 CCDC47Q96A33 483 aaKnown RBP18.27■□□□□ 0.52
VPS9D1-203ENST00000563798 ACDQ96AP0 544 aa18.27■□□□□ 0.52
VPS9D1-203ENST00000563798 CHAMP1Q96JM3 812 aa18.27■□□□□ 0.52
VPS9D1-203ENST00000563798 ZC3H10Q96K80 434 aaKnown RBP18.27■□□□□ 0.52
VPS9D1-203ENST00000563798 A0A0A0MRY4 1105 aa18.26■□□□□ 0.51
VPS9D1-203ENST00000563798 E2F8A0AVK6 867 aa18.26■□□□□ 0.51
VPS9D1-203ENST00000563798 MED19A0JLT2 244 aaPredicted RBP18.26■□□□□ 0.51
VPS9D1-203ENST00000563798 RPP40O75818 363 aaKnown RBP18.26■□□□□ 0.51
VPS9D1-203ENST00000563798 CYP17A1P05093 508 aa18.26■□□□□ 0.51
VPS9D1-203ENST00000563798 PRR29P0C7W0 189 aa18.26■□□□□ 0.51
VPS9D1-203ENST00000563798 EIF2DP41214 584 aaKnown RBP18.26■□□□□ 0.51
VPS9D1-203ENST00000563798 VAMP7P51809 220 aa18.26■□□□□ 0.51
VPS9D1-203ENST00000563798 SLC5A3P53794 718 aa18.26■□□□□ 0.51
VPS9D1-203ENST00000563798 CEP135Q66GS9 1140 aa18.26■□□□□ 0.51
VPS9D1-203ENST00000563798 INTS8Q75QN2 995 aaKnown RBP18.26■□□□□ 0.51
VPS9D1-203ENST00000563798 CACNA2D4Q7Z3S7 1137 aa18.26■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 64.7 ms