RNA–Protein interactions for RNA: ENST00000560858.1

SPG11-223, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 5

Gene SPG11, Length 447 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-223ENST00000560858 A0A1W2PR48 441 aa2.78□□□□□ -1.96
SPG11-223ENST00000560858 ZBTB7CA1YPR0 619 aa2.78□□□□□ -1.96
SPG11-223ENST00000560858 VWA3AA6NCI4 1184 aa2.78□□□□□ -1.96
SPG11-223ENST00000560858 GOLGA6L9A6NEM1 432 aa2.78□□□□□ -1.96
SPG11-223ENST00000560858 ERVV-2B6SEH9 535 aa2.78□□□□□ -1.96
SPG11-223ENST00000560858 SH2B2O14492 632 aaPredicted RBP2.78□□□□□ -1.96
SPG11-223ENST00000560858 KCNQ2O43526 872 aa2.78□□□□□ -1.96
SPG11-223ENST00000560858 RANBP6O60518 1105 aaKnown RBP2.78□□□□□ -1.96
SPG11-223ENST00000560858 ZRANB2O95218 330 aaKnown RBP eCLIP2.78□□□□□ -1.96
SPG11-223ENST00000560858 GASTP01350 101 aa2.78□□□□□ -1.96
SPG11-223ENST00000560858 PCCAP05165 728 aaPredicted RBP2.78□□□□□ -1.96
SPG11-223ENST00000560858 CSF1RP07333 972 aa2.78□□□□□ -1.96
SPG11-223ENST00000560858 SLC3A2P08195 630 aaKnown RBP2.78□□□□□ -1.96
SPG11-223ENST00000560858 ELANEP08246 267 aa2.78□□□□□ -1.96
SPG11-223ENST00000560858 IFIT1P09914 478 aaKnown RBP2.78□□□□□ -1.96
SPG11-223ENST00000560858 PRR35P0CG20 571 aa2.78□□□□□ -1.96
SPG11-223ENST00000560858 SNHG28P0DPA3 235 aa2.78□□□□□ -1.96
SPG11-223ENST00000560858 ZNF18P17022 549 aa2.78□□□□□ -1.96
SPG11-223ENST00000560858 SLC9A1P19634 815 aa2.78□□□□□ -1.96
SPG11-223ENST00000560858 SFPQP23246 707 aaKnown RBP eCLIP2.78□□□□□ -1.96
SPG11-223ENST00000560858 KELP23276 732 aa2.78□□□□□ -1.96
SPG11-223ENST00000560858 ADORA1P30542 326 aa2.78□□□□□ -1.96
SPG11-223ENST00000560858 ADD2P35612 726 aa2.78□□□□□ -1.96
SPG11-223ENST00000560858 GPR15P49685 360 aa2.78□□□□□ -1.96
SPG11-223ENST00000560858 RCAN1P53805 252 aa2.78□□□□□ -1.96
SPG11-223ENST00000560858 POLGP54098 1239 aaPredicted RBP2.78□□□□□ -1.96
SPG11-223ENST00000560858 TPM4P67936 248 aa2.78□□□□□ -1.96
SPG11-223ENST00000560858 CXADRP78310 365 aa2.78□□□□□ -1.96
SPG11-223ENST00000560858 CCT2P78371 535 aaKnown RBP2.78□□□□□ -1.96
SPG11-223ENST00000560858 MYL5Q02045 173 aa2.78□□□□□ -1.96
SPG11-223ENST00000560858 TBX2Q13207 712 aaPredicted RBP2.78□□□□□ -1.96
SPG11-223ENST00000560858 GRM1Q13255 1194 aa2.78□□□□□ -1.96
SPG11-223ENST00000560858 SLC39A14Q15043 492 aa2.78□□□□□ -1.96
SPG11-223ENST00000560858 STK38Q15208 465 aa2.78□□□□□ -1.96
SPG11-223ENST00000560858 LLGL1Q15334 1064 aa2.78□□□□□ -1.96
SPG11-223ENST00000560858 TERF2Q15554 542 aa2.78□□□□□ -1.96
SPG11-223ENST00000560858 ALX1Q15699 326 aa2.78□□□□□ -1.96
SPG11-223ENST00000560858 LRRC24Q50LG9 513 aa2.78□□□□□ -1.96
SPG11-223ENST00000560858 CCDC178Q5BJE1 867 aa2.78□□□□□ -1.96
SPG11-223ENST00000560858 CCDC158Q5M9N0 1113 aa2.78□□□□□ -1.96
SPG11-223ENST00000560858 RESP18Q5W5W9 173 aa2.78□□□□□ -1.96
SPG11-223ENST00000560858 ANO1Q5XXA6 986 aa2.78□□□□□ -1.96
SPG11-223ENST00000560858 B3GNTL1Q67FW5 361 aaPredicted RBP2.78□□□□□ -1.96
SPG11-223ENST00000560858 ZNF626Q68DY1 528 aa2.78□□□□□ -1.96
SPG11-223ENST00000560858 TTLL5Q6EMB2 1281 aa2.78□□□□□ -1.96
SPG11-223ENST00000560858 TRIM65Q6PJ69 517 aa2.78□□□□□ -1.96
SPG11-223ENST00000560858 FOXR2Q6PJQ5 311 aa2.78□□□□□ -1.96
SPG11-223ENST00000560858 SHC4Q6S5L8 630 aa2.78□□□□□ -1.96
SPG11-223ENST00000560858 TBC1D10CQ8IV04 446 aa2.78□□□□□ -1.96
SPG11-223ENST00000560858 VSTM4Q8IW00 320 aa2.78□□□□□ -1.96
SPG11-223ENST00000560858 COLGALT2Q8IYK4 626 aa2.78□□□□□ -1.96
SPG11-223ENST00000560858 LNX2Q8N448 690 aa2.78□□□□□ -1.96
SPG11-223ENST00000560858 JMYQ8N9B5 988 aa2.78□□□□□ -1.96
SPG11-223ENST00000560858 NCOA7Q8NI08 942 aa2.78□□□□□ -1.96
SPG11-223ENST00000560858 ZNF48Q96MX3 618 aaPredicted RBP2.78□□□□□ -1.96
SPG11-223ENST00000560858 NEU1Q99519 415 aa2.78□□□□□ -1.96
SPG11-223ENST00000560858 MPHOSPH8Q99549 860 aa2.78□□□□□ -1.96
SPG11-223ENST00000560858 MAP3K14Q99558 947 aa2.78□□□□□ -1.96
SPG11-223ENST00000560858 ELF4Q99607 663 aaPredicted RBP2.78□□□□□ -1.96
SPG11-223ENST00000560858 UBXN6Q9BZV1 441 aa2.78□□□□□ -1.96
SPG11-223ENST00000560858 VPS33BQ9H267 617 aa2.78□□□□□ -1.96
SPG11-223ENST00000560858 BHMT2Q9H2M3 363 aa2.78□□□□□ -1.96
SPG11-223ENST00000560858 RNPEPQ9H4A4 650 aa2.78□□□□□ -1.96
SPG11-223ENST00000560858 INTS13Q9NVM9 706 aa2.78□□□□□ -1.96
SPG11-223ENST00000560858 SLTMQ9NWH9 1034 aaKnown RBP eCLIP2.78□□□□□ -1.96
SPG11-223ENST00000560858 ZNF446Q9NWS9 450 aa2.78□□□□□ -1.96
SPG11-223ENST00000560858 KCTD5Q9NXV2 234 aa2.78□□□□□ -1.96
SPG11-223ENST00000560858 IFNKQ9P0W0 207 aa2.78□□□□□ -1.96
SPG11-223ENST00000560858 SAMD15Q9P1V8 674 aa2.78□□□□□ -1.96
SPG11-223ENST00000560858 ORC3Q9UBD5 711 aaPredicted RBP2.78□□□□□ -1.96
SPG11-223ENST00000560858 MSRB2Q9Y3D2 182 aa2.78□□□□□ -1.96
SPG11-223ENST00000560858 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP2.78□□□□□ -1.964e-12■□□□□ 9.7
SPG11-223ENST00000560858 CLIC4Q9Y696 253 aa2.78□□□□□ -1.96
SPG11-223ENST00000560858 LRRC37AA6NMS7 1700 aa2.78□□□□□ -1.96
SPG11-223ENST00000560858 AHDC1Q5TGY3 1603 aaPredicted RBP2.78□□□□□ -1.96
SPG11-223ENST00000560858 COL1A1P02452 1464 aaPredicted RBP2.77□□□□□ -1.97
SPG11-223ENST00000560858 BCL9O00512 1426 aa2.77□□□□□ -1.97
SPG11-223ENST00000560858 RTL9Q8NET4 1388 aa2.77□□□□□ -1.97
SPG11-223ENST00000560858 QSER1Q2KHR3 1735 aa2.77□□□□□ -1.97
SPG11-223ENST00000560858 PNPLA7Q6ZV29 1317 aa2.77□□□□□ -1.97
SPG11-223ENST00000560858 A0A1B0GTW7 788 aa2.77□□□□□ -1.97
SPG11-223ENST00000560858 CCDC85CA6NKD9 419 aa2.77□□□□□ -1.97
SPG11-223ENST00000560858 EFCAB8A8MWE9 144 aa2.77□□□□□ -1.97
SPG11-223ENST00000560858 INSIG1O15503 277 aa2.77□□□□□ -1.97
SPG11-223ENST00000560858 GPAA1O43292 621 aa2.77□□□□□ -1.97
SPG11-223ENST00000560858 ATP8B1O43520 1251 aa2.77□□□□□ -1.97
SPG11-223ENST00000560858 MOSPD3O75425 235 aa2.77□□□□□ -1.97
SPG11-223ENST00000560858 WDHD1O75717 1129 aaPredicted RBP2.77□□□□□ -1.97
SPG11-223ENST00000560858 SEC24DO94855 1032 aaPredicted RBP2.77□□□□□ -1.97
SPG11-223ENST00000560858 SMC2O95347 1197 aa2.77□□□□□ -1.97
SPG11-223ENST00000560858 NTN1O95631 604 aa2.77□□□□□ -1.97
SPG11-223ENST00000560858 FGAP02671 866 aa2.77□□□□□ -1.97
SPG11-223ENST00000560858 PNMA6AP0CW24 399 aaPredicted RBP2.77□□□□□ -1.97
SPG11-223ENST00000560858 ATP1A3P13637 1013 aa2.77□□□□□ -1.97
SPG11-223ENST00000560858 IFNAR1P17181 557 aa2.77□□□□□ -1.97
SPG11-223ENST00000560858 ITPKBP27987 946 aa2.77□□□□□ -1.97
SPG11-223ENST00000560858 CYP2C19P33261 490 aa2.77□□□□□ -1.97
SPG11-223ENST00000560858 PBX1P40424 430 aa2.77□□□□□ -1.97
SPG11-223ENST00000560858 FOLR3P41439 243 aa2.77□□□□□ -1.97
SPG11-223ENST00000560858 LIFRP42702 1097 aa2.77□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms