RNA–Protein interactions for RNA: ENST00000557455.1

CCDC88C-213, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 811 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-213ENST00000557455 SLITRK1Q96PX8 696 aa11.79□□□□□ -0.52
CCDC88C-213ENST00000557455 ZNF518BQ9C0D4 1074 aa11.79□□□□□ -0.52
CCDC88C-213ENST00000557455 RNF38Q9H0F5 515 aa11.79□□□□□ -0.52
CCDC88C-213ENST00000557455 GZF1Q9H116 711 aaPredicted RBP11.79□□□□□ -0.52
CCDC88C-213ENST00000557455 XYLT2Q9H1B5 865 aa11.79□□□□□ -0.52
CCDC88C-213ENST00000557455 SPTBN2O15020 2390 aa11.79□□□□□ -0.52
CCDC88C-213ENST00000557455 CLDN5O00501 218 aa11.78□□□□□ -0.52
CCDC88C-213ENST00000557455 EPN2O95208 641 aa11.78□□□□□ -0.52
CCDC88C-213ENST00000557455 APBB3O95704 486 aa11.78□□□□□ -0.52
CCDC88C-213ENST00000557455 ZNF806P0C7X5 589 aa11.78□□□□□ -0.52
CCDC88C-213ENST00000557455 RAP1GAPP47736 663 aa11.78□□□□□ -0.52
CCDC88C-213ENST00000557455 CASP4P49662 377 aa11.78□□□□□ -0.52
CCDC88C-213ENST00000557455 AP3M2P53677 418 aa11.78□□□□□ -0.52
CCDC88C-213ENST00000557455 CACNA2D1P54289 1103 aa11.78□□□□□ -0.52
CCDC88C-213ENST00000557455 SLC7A9P82251 487 aa11.78□□□□□ -0.52
CCDC88C-213ENST00000557455 DMC1Q14565 340 aa11.78□□□□□ -0.52
CCDC88C-213ENST00000557455 CCDC6Q16204 474 aa11.78□□□□□ -0.52
CCDC88C-213ENST00000557455 ZNF699Q32M78 642 aa11.78□□□□□ -0.52
CCDC88C-213ENST00000557455 FILIP1Q7Z7B0 1213 aa11.78□□□□□ -0.52
CCDC88C-213ENST00000557455 GRAMD1CQ8IYS0 662 aa11.78□□□□□ -0.52
CCDC88C-213ENST00000557455 NUP93Q8N1F7 819 aa11.78□□□□□ -0.52
CCDC88C-213ENST00000557455 B3GNT5Q9BYG0 378 aa11.78□□□□□ -0.52
CCDC88C-213ENST00000557455 TMEM30AQ9NV96 361 aa11.78□□□□□ -0.52
CCDC88C-213ENST00000557455 SMPD4Q9NXE4 827 aa11.78□□□□□ -0.52
CCDC88C-213ENST00000557455 SERTAD1Q9UHV2 236 aa11.78□□□□□ -0.52
CCDC88C-213ENST00000557455 CPQQ9Y646 472 aa11.78□□□□□ -0.52
CCDC88C-213ENST00000557455 ATP8B3O60423 1300 aa11.78□□□□□ -0.52
CCDC88C-213ENST00000557455 THADAQ6YHU6 1953 aa11.78□□□□□ -0.52
CCDC88C-213ENST00000557455 NUP205Q92621 2012 aa11.77□□□□□ -0.52
CCDC88C-213ENST00000557455 LRRIQ3A6PVS8 624 aaPredicted RBP11.77□□□□□ -0.53
CCDC88C-213ENST00000557455 SLC9A3R1O14745 358 aaPredicted RBP11.77□□□□□ -0.53
CCDC88C-213ENST00000557455 KLRC4O43908 158 aa11.77□□□□□ -0.53
CCDC88C-213ENST00000557455 RTN3O95197 1032 aaPredicted RBP11.77□□□□□ -0.53
CCDC88C-213ENST00000557455 OLFM2O95897 454 aa11.77□□□□□ -0.53
CCDC88C-213ENST00000557455 OAS1P00973 400 aaKnown RBP11.77□□□□□ -0.53
CCDC88C-213ENST00000557455 CYP17A1P05093 508 aa11.77□□□□□ -0.53
CCDC88C-213ENST00000557455 SLFN14P0C7P3 912 aa11.77□□□□□ -0.53
CCDC88C-213ENST00000557455 MBL2P11226 248 aaPredicted RBP11.77□□□□□ -0.53
CCDC88C-213ENST00000557455 YWHAQP27348 245 aa11.77□□□□□ -0.53
CCDC88C-213ENST00000557455 OPRD1P41143 372 aa11.77□□□□□ -0.53
CCDC88C-213ENST00000557455 DGKEP52429 567 aa11.77□□□□□ -0.53
CCDC88C-213ENST00000557455 CDH8P55286 799 aa11.77□□□□□ -0.53
CCDC88C-213ENST00000557455 SEC13P55735 322 aa11.77□□□□□ -0.53
CCDC88C-213ENST00000557455 DNM1Q05193 864 aaKnown RBP11.77□□□□□ -0.53
CCDC88C-213ENST00000557455 STK4Q13043 487 aa11.77□□□□□ -0.53
CCDC88C-213ENST00000557455 NCOA4Q13772 614 aa11.77□□□□□ -0.53
CCDC88C-213ENST00000557455 SF3A2Q15428 464 aaKnown RBP11.77□□□□□ -0.53
CCDC88C-213ENST00000557455 PLK5Q496M5 336 aa11.77□□□□□ -0.53
CCDC88C-213ENST00000557455 C2orf27AQ580R0 203 aa11.77□□□□□ -0.53
CCDC88C-213ENST00000557455 ZNF667Q5HYK9 610 aa11.77□□□□□ -0.53
CCDC88C-213ENST00000557455 PPM1JQ5JR12 505 aa11.77□□□□□ -0.53
CCDC88C-213ENST00000557455 IL31Q6EBC2 164 aa11.77□□□□□ -0.53
CCDC88C-213ENST00000557455 SCARA5Q6ZMJ2 495 aa11.77□□□□□ -0.53
CCDC88C-213ENST00000557455 ADGRG2Q8IZP9 1017 aa11.77□□□□□ -0.53
CCDC88C-213ENST00000557455 KIAA1958Q8N8K9 716 aa11.77□□□□□ -0.53
CCDC88C-213ENST00000557455 SPRYD3Q8NCJ5 442 aa11.77□□□□□ -0.53
CCDC88C-213ENST00000557455 PDZD8Q8NEN9 1154 aa11.77□□□□□ -0.53
CCDC88C-213ENST00000557455 PLEKHO2Q8TD55 490 aa11.77□□□□□ -0.53
CCDC88C-213ENST00000557455 PARD3BQ8TEW8 1205 aa11.77□□□□□ -0.53
CCDC88C-213ENST00000557455 ZC3H10Q96K80 434 aaKnown RBP11.77□□□□□ -0.53
CCDC88C-213ENST00000557455 TNIP3Q96KP6 325 aa11.77□□□□□ -0.53
CCDC88C-213ENST00000557455 MED10Q9BTT4 135 aa11.77□□□□□ -0.53
CCDC88C-213ENST00000557455 SMYD3Q9H7B4 428 aa11.77□□□□□ -0.53
CCDC88C-213ENST00000557455 VRTNQ9H8Y1 702 aa11.77□□□□□ -0.53
CCDC88C-213ENST00000557455 EXOC1Q9NV70 894 aa11.77□□□□□ -0.53
CCDC88C-213ENST00000557455 EBF1Q9UH73 591 aa11.77□□□□□ -0.53
CCDC88C-213ENST00000557455 RCOR1Q9UKL0 485 aa11.77□□□□□ -0.53
CCDC88C-213ENST00000557455 PCDHGA5Q9Y5G8 931 aa11.77□□□□□ -0.53
CCDC88C-213ENST00000557455 K7EQS6 105 aa11.76□□□□□ -0.53
CCDC88C-213ENST00000557455 SCAMP3O14828 347 aaKnown RBP11.76□□□□□ -0.53
CCDC88C-213ENST00000557455 RHOBTB1O94844 696 aa11.76□□□□□ -0.53
CCDC88C-213ENST00000557455 C4BPAP04003 597 aaKnown RBP11.76□□□□□ -0.53
CCDC88C-213ENST00000557455 CLDN10P78369 228 aa11.76□□□□□ -0.53
CCDC88C-213ENST00000557455 PKP1Q13835 747 aa11.76□□□□□ -0.53
CCDC88C-213ENST00000557455 DHCR24Q15392 516 aa11.76□□□□□ -0.53
CCDC88C-213ENST00000557455 ELF2Q15723 593 aa11.76□□□□□ -0.53
CCDC88C-213ENST00000557455 KMT5BQ4FZB7 885 aa11.76□□□□□ -0.53
CCDC88C-213ENST00000557455 DDX42Q86XP3 938 aaKnown RBP eCLIP11.76□□□□□ -0.53
CCDC88C-213ENST00000557455 SLC9A9Q8IVB4 645 aa11.76□□□□□ -0.53
CCDC88C-213ENST00000557455 KIAA0895Q8NCT3 520 aa11.76□□□□□ -0.53
CCDC88C-213ENST00000557455 TSTD1Q8NFU3 115 aa11.76□□□□□ -0.53
CCDC88C-213ENST00000557455 USP33Q8TEY7 942 aa11.76□□□□□ -0.53
CCDC88C-213ENST00000557455 OVCA2Q8WZ82 227 aa11.76□□□□□ -0.53
CCDC88C-213ENST00000557455 DDX1Q92499 740 aaKnown RBP11.76□□□□□ -0.53
CCDC88C-213ENST00000557455 FBXO32Q969P5 355 aa11.76□□□□□ -0.53
CCDC88C-213ENST00000557455 PAGE5Q96GU1 130 aa11.76□□□□□ -0.53
CCDC88C-213ENST00000557455 KCNK16Q96T55 309 aa11.76□□□□□ -0.53
CCDC88C-213ENST00000557455 DUSP15Q9H1R2 295 aaPredicted RBP11.76□□□□□ -0.53
CCDC88C-213ENST00000557455 DMAC2Q9NW81 257 aa11.76□□□□□ -0.53
CCDC88C-213ENST00000557455 CFAP97Q9P2B7 532 aa11.76□□□□□ -0.53
CCDC88C-213ENST00000557455 CHORDC1Q9UHD1 332 aaPredicted RBP11.76□□□□□ -0.53
CCDC88C-213ENST00000557455 PDXKO00764 312 aa11.75□□□□□ -0.53
CCDC88C-213ENST00000557455 DCLK1O15075 740 aa11.75□□□□□ -0.53
CCDC88C-213ENST00000557455 ACTN4O43707 911 aaKnown RBP11.75□□□□□ -0.53
CCDC88C-213ENST00000557455 VNN1O95497 513 aa11.75□□□□□ -0.53
CCDC88C-213ENST00000557455 ADH1CP00326 375 aa11.75□□□□□ -0.53
CCDC88C-213ENST00000557455 ADRB1P08588 477 aa11.75□□□□□ -0.53
CCDC88C-213ENST00000557455 P4HA1P13674 534 aa11.75□□□□□ -0.53
CCDC88C-213ENST00000557455 KCNA4P22459 653 aa11.75□□□□□ -0.53
CCDC88C-213ENST00000557455 GBP1P32455 592 aa11.75□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 66.7 ms