RNA–Protein interactions for RNA: ENST00000556767.1

CCDC88C-212, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 676 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-212ENST00000556767 DDX6P26196 483 aaKnown RBP eCLIP12.09□□□□□ -0.47
CCDC88C-212ENST00000556767 AVPR1AP37288 418 aa12.09□□□□□ -0.47
CCDC88C-212ENST00000556767 VIPR2P41587 438 aa12.09□□□□□ -0.47
CCDC88C-212ENST00000556767 FANCCQ00597 558 aa12.09□□□□□ -0.47
CCDC88C-212ENST00000556767 BST2Q10589 180 aaKnown RBP12.09□□□□□ -0.47
CCDC88C-212ENST00000556767 TDGQ13569 410 aa12.09□□□□□ -0.47
CCDC88C-212ENST00000556767 HTR4Q13639 388 aa12.09□□□□□ -0.47
CCDC88C-212ENST00000556767 CNGA2Q16280 664 aa12.09□□□□□ -0.47
CCDC88C-212ENST00000556767 PTPN21Q16825 1174 aa12.09□□□□□ -0.47
CCDC88C-212ENST00000556767 TANGO2Q6ICL3 276 aa12.09□□□□□ -0.47
CCDC88C-212ENST00000556767 DPY19L2P1Q6NXN4 242 aa12.09□□□□□ -0.47
CCDC88C-212ENST00000556767 POTEHQ6S545 545 aa12.09□□□□□ -0.47
CCDC88C-212ENST00000556767 LCLAT1Q6UWP7 414 aa12.09□□□□□ -0.47
CCDC88C-212ENST00000556767 GPRIN1Q7Z2K8 1008 aa12.09□□□□□ -0.47
CCDC88C-212ENST00000556767 MON1AQ86VX9 555 aa12.09□□□□□ -0.47
CCDC88C-212ENST00000556767 ARID3BQ8IVW6 561 aaPredicted RBP12.09□□□□□ -0.47
CCDC88C-212ENST00000556767 PDZD8Q8NEN9 1154 aa12.09□□□□□ -0.47
CCDC88C-212ENST00000556767 FGF14Q92915 247 aa12.09□□□□□ -0.47
CCDC88C-212ENST00000556767 SECISBP2LQ93073 1101 aaKnown RBP12.09□□□□□ -0.47
CCDC88C-212ENST00000556767 NAP1L5Q96NT1 182 aaPredicted RBP12.09□□□□□ -0.47
CCDC88C-212ENST00000556767 SPAG5Q96R06 1193 aa12.09□□□□□ -0.47
CCDC88C-212ENST00000556767 ERGIC2Q96RQ1 377 aa12.09□□□□□ -0.47
CCDC88C-212ENST00000556767 ZSWIM1Q9BR11 485 aa12.09□□□□□ -0.47
CCDC88C-212ENST00000556767 RPP25Q9BUL9 199 aaKnown RBP12.09□□□□□ -0.47
CCDC88C-212ENST00000556767 TTLL2Q9BWV7 592 aa12.09□□□□□ -0.47
CCDC88C-212ENST00000556767 SLC46A2Q9BY10 475 aa12.09□□□□□ -0.47
CCDC88C-212ENST00000556767 STK33Q9BYT3 514 aa12.09□□□□□ -0.47
CCDC88C-212ENST00000556767 SMG9Q9H0W8 520 aaKnown RBP12.09□□□□□ -0.47
CCDC88C-212ENST00000556767 PDCL3Q9H2J4 239 aa12.09□□□□□ -0.47
CCDC88C-212ENST00000556767 LRRC4Q9HBW1 653 aa12.09□□□□□ -0.47
CCDC88C-212ENST00000556767 RTN4Q9NQC3 1192 aaKnown RBP12.09□□□□□ -0.47
CCDC88C-212ENST00000556767 COMMD8Q9NX08 183 aa12.09□□□□□ -0.47
CCDC88C-212ENST00000556767 GMIPQ9P107 970 aa12.09□□□□□ -0.47
CCDC88C-212ENST00000556767 WDR3Q9UNX4 943 aaKnown RBP eCLIP12.09□□□□□ -0.47
CCDC88C-212ENST00000556767 SORCS3Q9UPU3 1222 aa12.09□□□□□ -0.47
CCDC88C-212ENST00000556767 SIK3Q9Y2K2 1263 aa12.09□□□□□ -0.47
CCDC88C-212ENST00000556767 REV3LO60673 3130 aa12.09□□□□□ -0.47
CCDC88C-212ENST00000556767 GREB1Q4ZG55 1949 aa12.09□□□□□ -0.47
CCDC88C-212ENST00000556767 TRAV19A0A0A6YYK7 116 aa12.08□□□□□ -0.48
CCDC88C-212ENST00000556767 ZNF840PA6NDX5 716 aa12.08□□□□□ -0.48
CCDC88C-212ENST00000556767 HHLA1C9JL84 531 aa12.08□□□□□ -0.48
CCDC88C-212ENST00000556767 ANHXE9PGG2 379 aa12.08□□□□□ -0.48
CCDC88C-212ENST00000556767 TULP2O00295 520 aa12.08□□□□□ -0.48
CCDC88C-212ENST00000556767 TNFRSF10BO14763 440 aa12.08□□□□□ -0.48
CCDC88C-212ENST00000556767 XPO1O14980 1071 aaKnown RBP12.08□□□□□ -0.48
CCDC88C-212ENST00000556767 DCXO43602 365 aa12.08□□□□□ -0.48
CCDC88C-212ENST00000556767 TADA3O75528 432 aa12.08□□□□□ -0.48
CCDC88C-212ENST00000556767 CKMP06732 381 aa12.08□□□□□ -0.48
CCDC88C-212ENST00000556767 SETSIPP0DME0 302 aa12.08□□□□□ -0.48
CCDC88C-212ENST00000556767 ALADP13716 330 aa12.08□□□□□ -0.48
CCDC88C-212ENST00000556767 PPP3CCP48454 512 aa12.08□□□□□ -0.48
CCDC88C-212ENST00000556767 RGS7P49802 495 aa12.08□□□□□ -0.48
CCDC88C-212ENST00000556767 UBASH3AP57075 661 aa12.08□□□□□ -0.48
CCDC88C-212ENST00000556767 BPIFB4P59827 614 aa12.08□□□□□ -0.48
CCDC88C-212ENST00000556767 CACNA2D4Q7Z3S7 1137 aa12.08□□□□□ -0.48
CCDC88C-212ENST00000556767 YAF2Q8IY57 180 aa12.08□□□□□ -0.48
CCDC88C-212ENST00000556767 CMTM8Q8IZV2 173 aa12.08□□□□□ -0.48
CCDC88C-212ENST00000556767 SLC44A3Q8N4M1 653 aa12.08□□□□□ -0.48
CCDC88C-212ENST00000556767 ARL14EPQ8N8R7 260 aaPredicted RBP12.08□□□□□ -0.48
CCDC88C-212ENST00000556767 ZNF606Q8WXB4 792 aa12.08□□□□□ -0.48
CCDC88C-212ENST00000556767 KHSRPQ92945 711 aaKnown RBP eCLIP12.08□□□□□ -0.48
CCDC88C-212ENST00000556767 NXPE3Q969Y0 559 aa12.08□□□□□ -0.48
CCDC88C-212ENST00000556767 ASB16Q96NS5 453 aa12.08□□□□□ -0.48
CCDC88C-212ENST00000556767 NACA2Q9H009 215 aa12.08□□□□□ -0.48
CCDC88C-212ENST00000556767 GANQ9H2C0 597 aa12.08□□□□□ -0.48
CCDC88C-212ENST00000556767 SMOC2Q9H3U7 446 aa12.08□□□□□ -0.48
CCDC88C-212ENST00000556767 PNPLA8Q9NP80 782 aa12.08□□□□□ -0.48
CCDC88C-212ENST00000556767 ZMYM5Q9UJ78 669 aa12.08□□□□□ -0.48
CCDC88C-212ENST00000556767 MYO10Q9HD67 2058 aa12.07□□□□□ -0.48
CCDC88C-212ENST00000556767 A0A1B0GTH6 734 aa12.07□□□□□ -0.48
CCDC88C-212ENST00000556767 C2orf78A6NCI8 922 aa12.07□□□□□ -0.48
CCDC88C-212ENST00000556767 HEPACAM2A8MVW5 462 aa12.07□□□□□ -0.48
CCDC88C-212ENST00000556767 F8VZ95 297 aa12.07□□□□□ -0.48
CCDC88C-212ENST00000556767 PIK3R2O00459 728 aa12.07□□□□□ -0.48
CCDC88C-212ENST00000556767 EPHB6O15197 1021 aa12.07□□□□□ -0.48
CCDC88C-212ENST00000556767 ECI2O75521 394 aa12.07□□□□□ -0.48
CCDC88C-212ENST00000556767 GFPT2O94808 682 aa12.07□□□□□ -0.48
CCDC88C-212ENST00000556767 USP17L7P0C7H9 530 aa12.07□□□□□ -0.48
CCDC88C-212ENST00000556767 LCP1P13796 627 aa12.07□□□□□ -0.48
CCDC88C-212ENST00000556767 HDCP19113 662 aa12.07□□□□□ -0.48
CCDC88C-212ENST00000556767 KRT9P35527 623 aa12.07□□□□□ -0.48
CCDC88C-212ENST00000556767 STAT1P42224 750 aa12.07□□□□□ -0.48
CCDC88C-212ENST00000556767 PDE6CP51160 858 aa12.07□□□□□ -0.48
CCDC88C-212ENST00000556767 TKTL1P51854 596 aa12.07□□□□□ -0.48
CCDC88C-212ENST00000556767 KIF11P52732 1056 aa12.07□□□□□ -0.48
CCDC88C-212ENST00000556767 ZNF445P59923 1031 aa12.07□□□□□ -0.48
CCDC88C-212ENST00000556767 GRM2Q14416 872 aa12.07□□□□□ -0.48
CCDC88C-212ENST00000556767 DENND1BQ6P3S1 775 aa12.07□□□□□ -0.48
CCDC88C-212ENST00000556767 SLC47A2Q86VL8 602 aa12.07□□□□□ -0.48
CCDC88C-212ENST00000556767 FAM71AQ8IYT1 594 aa12.07□□□□□ -0.48
CCDC88C-212ENST00000556767 SIX6OS1Q8N1H7 587 aa12.07□□□□□ -0.48
CCDC88C-212ENST00000556767 OVCA2Q8WZ82 227 aa12.07□□□□□ -0.48
CCDC88C-212ENST00000556767 E2F7Q96AV8 911 aa12.07□□□□□ -0.48
CCDC88C-212ENST00000556767 ELSPBP1Q96BH3 223 aa12.07□□□□□ -0.48
CCDC88C-212ENST00000556767 CYP2S1Q96SQ9 504 aa12.07□□□□□ -0.48
CCDC88C-212ENST00000556767 NAA15Q9BXJ9 866 aaKnown RBP12.07□□□□□ -0.48
CCDC88C-212ENST00000556767 PLA2G2FQ9BZM2 168 aa12.07□□□□□ -0.48
CCDC88C-212ENST00000556767 UBXN6Q9BZV1 441 aa12.07□□□□□ -0.48
CCDC88C-212ENST00000556767 TLR8Q9NR97 1041 aaKnown RBP12.07□□□□□ -0.48
CCDC88C-212ENST00000556767 ST7Q9NRC1 585 aa12.07□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms